Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030986311.1 PREDICTED: Strongylocentrotus purpuratus UPF0687 protein C20orf27 homolog (LOC752636), mRNA TCTTCTTTTAAAATTTTCAGAACAGACAACAAGCCAGGTGAAGATGAGACCAAGATCTCGCTCAAAGGTC CACTTTCCAGAGGATGTCACAGATCATTCTGAGATCCTTATCTCAAGAGAGATTGATAGCTCCATCGATG TCAATGTAGGATTCCTTCAGACGGATCATAGATATCAAATCAGATTTACTGTCGAAGATTCATTAAAGGG AGATGTCATTGCCAAAGAGAATTCTAGTACCATCATCCAATCAGTGGAAGCCCATGCAAGACCAGACGAT AATGGACATGATATTCAACTAGAACTCCTCTCACACAAGGAGGGTATAATGGCCGAACCTTTCACAATCC ACTGCATGGACGATAAAGAAGATAAAGACAAATCGGTTATGGTTGTAGTACGTGCAAGATTACTAGGCAA AGATCAAGGAAGACCGATGTTAAAAGAAAGCATCATAAACATGGGTCTTGAACCCGACGATAGTTCAGAA GAGGAGAGCGATCGAGACACCCACGATTGATTTCATCTTAGCGTTCCTTCCTTTCTATCCTTCATTTTAA CCTTGTAGCCTGGAAGATGTAGAGATCTTATCCCTCGGTGTCAGAAGAATGCTTTATAAAAATGATCAAG TCTTTTGAAGAGGGGTCTGGTAGTGAAGTTGTTTGCCTGTTTGGATAGTGTATAAAGTTGAAAGTTTTTA TTGAAAGAGATGTTTTACGTGATGCATGTCAATGTAATGTATGAATTGAATAAAAAAGTTGAGAATGCAA AGAAATGAAGTTTTTATCAGATTTGGTTATATTTTATGAAATAATGTACCTGCTAGTTAGGATTATTTGT TATATAATAGAACAATTGAGCTTTATCTTCTATATCCAGAACCAATCATGAATTTAATAGATCAATTTGT TTTATAAGGTAGAGCGGTCACATGTTAGCATTATACCAGATGTAACACCTGAGAGGCAAGCTCGTATGGA TGACTTTTTGTCACCATATTTCTGTATTCTGCTTAAAGTGCAATTCACTATTAAAGCTAAGATATTGCGA TCATGAACAAAATTGTTACAAAGGTACAAGACAGTGAATATAATTATAGGAATTTGTTTTCTCTCTGCCC ATTGTTATATTTCCCCAGGCTCATTTCAAATTACAATAAATATTGTATATGAATGAAACTTGAAAGTTAG ATAGGGTTTATTCAAGTTAAGGTTTGGGACAATAGCTGTAGGAATGAAGAGCAAAATGTGTTCATTCGTC AGAGTATTCAAAGTTGAATCTTACATTGAGTTCAAATCTGTATTTTGTACAAATACAGTACCGACATGCA CCAAAAAAAGATTTAGAAAGAGCTATTTATTTTTGCACAAACATTACATATTGTATTGATAGTTTTTTTC TTCTTCATGTTGATAATATTTAATTGAGAGTGTAGGTATTTAGCATTTTGTTACTTGTCTTCTATACTTG CTGGTAAGTATTTGTAGTGCTATTGAAAATGGATATCTTATCAAACGTAACATTCTATCTTGCACACTGT CTGATTTTAAAACTTGTTATATATATTGTTTAACTTGAACTTGATGATGAAGATATTGTGAAGGTTCTGT GGTGTCTTAATTCATGTGTATAAATTTGCTTCTTTTTGTCTGATATCCATTATAGGTTATTATTTAAAAG TAGCACTCTATAAAAGTCTTTAATTTCAAATTTCTGCTATTTAAAGGCAGAGTATTTTACTGACACTACT TCATATTTACATCTACTGCCATCTGCTGCTCATAATGTCCTAATGTGTTGACAGCCATGTCCCACAATTC ATCACCAACTGCACGACGACGTGTGCAAGATTATGCTTGGGTAAAGGAACCACAAATCCTTCTATGTACG TCTTCATCAATAGATGGCGCAATTACAAATTTATTACAGCAGGGGTATAGCGATGTTGATAAAATACCCT GCCTCAAAGGGTTCTGTGTATTATCATTTGATTAAAAAGGTGGTAACCATGATCATGTTCCAGTTTAGGC AGGATATAAAGTAGATATCAAAAATTGTCTAAAATTTAATTTCATATTCTAGAGCTGGGAACCAAACTGC TGGTTCAGTTTGCTTAGAATTATTTAAATTAATTGGAATACAGAGTTATGTAGTGGTATGTTACCAAGGT GAGCAAAGAAGGATAAATAGACAATCTCATTACAACATCCTTATCTTCATTAATCTCTTATTTAAGTATT TTATAAGATTTGAGAGAAGAAAAAAAACTATAGTGCTGGAGACAAAATGAATGAAAGTGTGCAGTATTCA TTGCAAAGGCATAAAATTGATTAATAAAATCTATATTAATAAGGAAAATATACACTGTGCAAGAAAACAG TTAAGTGTAAGTAAAAAAGTTTTAAATGTTTGACATCGGAACACTTAATATTGTGAAATGAATTTTTTTA TTATTTGATGAAATCAAAATCAAAATCAAAATATTGGGTCTATAAGACCTATAGTAAAGCTTATTTGGGT TTATATCCTGGATTATTTTCTGAAACAAAGTTTATATCTACTTGTACCTTGCCATATTCCCTCATCCATT ATACTCGGGCATCAGGCAAACTCAATGAAGGATACAAATGTTTAATGATCATGTTATTATGTAACCCAGT AATGCTTATTATCTTCAATATTCAATCTCTTAACCTTTAAGTGACGTGTGTAATGGCAGTGACAAGTCAC CCAATTGCAAGAAAAAAATGTTTCCATAGCAACATTAGCGCCTGTTGAGTTCCAGCATACCTAATTCATG TTTCATGGTTTCTCAAGCATATAATGATGTTTCGTCATGGTAATTTTTGTATTGAAAAAAATAGTATGTT GTCAACTGTTCATAGTGTGATAGCAAAGACAGAGATGGATAGATGTGAGAGCAGTAGACTTTATGCAGGA ATTCCAATCATGTACGTCATCAATAGACCGGTTTATTAACATATTCAAATTGTATGAATACTTTTTGAGC AAAGGTTGTTTTTTGAAGACCTGAAAATTGCCCGACATAGCAACATGTACTATATGCAGACTGGATTTCA AGTATTTTAGTTCATTCATTAGTAACAAGTTAATTGAATAACTCGTCACTAGGTCCCCTGAAAAGAAACA TCCATAAATTTGAATATTGTAGTAAACCGATCTATTTGGTAGTGTTTGTTTCATCTTACAAGACCTTGAT ACGGCAGTAACGTAATCATCTTCCAGTAACATACATTCCATGAGAGGAAACAAGTTCTTGGGCACACATC CATTTTTAATGTTGTGCATTTATACCAACAATAATTTACCGTCACTTTAGGAGAGGAATAGTTACATGTA GCTTGCATCAATTATTGTTATGAAAAGCATCTTTGATCGACTGCTAAAATATCCCTTTGTTTTATGATAT AGCTGGACCAAAGTGTCAAAAGTTGTGTATTCATGTTGATCAGTTGATGTGATCTCTTTTAAAGAAAGGA CATTCTATAGTGAGAGCCATTAGGCCATAAAGTCATAAGTTTTATGAAGTGGTACCGTAATGCCCTTTTG CCACTGAACAGATAATCTTCTGTGTAGATCATTGTGAATTGCATTAATCATCTTGTTTGACATATTGACT TTATTTCTTGAGACTGTAATGTGACAATGATTGTTATGTTGTGTTCATCGATAATGCAGTATGGTTTATG AATCCTACAACTGTGTAGGATTAAAGATGGTAATATGAAAAATGTACTAGGGGGTCCCATCTATTCAATA CCTTACCAAACTTAGCTTTCTATATATCCAGATATTATCTGAAATATAAAACTCACAACTCTTACTTGTC CTATATGAGAATATATAATCAAATATGGTATCCTTACAAAAGAAAAATGAAAAATCACTATTACTGAGTT TATGAAGATCAATTACTACCTCCAGTAATTAGTTATCTCATTATTTATTTCTAGTTTGTCAACAATTTTA TTCATTCTGAAATACGCTCGAAATAGCTTTGCCAGGCTTCTTTGTATACTATAATTAACAAATTATATTG GAATAGAATAGAATAAAATTCTTATTTGTTTTAATATCTAGAAGGAATGCTCTGTTTTGGATACTGAAAC GATTGGTTCTTTGGGCTTATTATAATGTTCAATACCCTTGGAGCTTTTGAAGTAGTTATAATAAATCAAG TATCGTGGTAAAATTAAATATCTTGCATCAAAGGGAAAGAAATGTATTTCTTGAAACACAGAAATAGGTA GGCTGAGTTGCAGTCTATTTTCTACTTCCTTTTATCATTATCATCACTCTTATTTTCAAATTCAAATTAA ATTTGATTTATTTATATTTGCCAGCTCTTCTTTCATAACTGCATATCATTTATATGATTCACGTCTTATC TAAATGTATACACAATACATTGTTTACACAATACATTGTTTATCACTTGAAATGTATAATGTGTTGCCTT TGAGTATATCTGTCAGCTGAGAGCCAGAAAGATGTTAAATAGAAGGATATGAGTTAACACCCTTCTGGCT CTCAGCACATGGTGTTTTAGTGTATAATGTACATATTTAATTTTGTGTGGAAACTAGAATTCCAGGTTGT TAGGTTGTTGATAGCTCATTGATGAAATTCATATCCAGAAATTGTATGAAAGTATTTTTATGTTTATAGG AAGACAAAATTGAACATTGAAGTGAAAGAATGTATATACCAGTGTTAAAGATACAGATCAAAGGTAATAT TAGATCTATTCATCACTAATCATGATCTTGAATACAGCTATACTAGAAATTCCAAAAGATAATCATCGGT ATGAAATCATATAGTAATTTAAGCTTTTGAATAGGAGGATAGGAGATTTTTTCCCTTTTTTCCCCCAATT TTTATTTTGACCAAACCTTCGTAATTCTGGTTTAATCTCTTTGAGTCTGCCATATCTTTTTTTGAAAAAA TTATATTCTCCATTGCATCATAAAAAGTCATGAGAAGGTATAACATGGCTTTTAAAAGTATATAGTTGCA CTATTGGTATTTATTTCAACTTCAAGTTATATTTCATATTCATATTTATAACCCAGACCAAAAAGTCATA TCTTATATGTAATAAGATAAAGCAATCTATATTTATTTAAAATTAAAAGTATATTTCATATTCATATTTA TAACCCAGACCAAAAAGTCATAATATTTTATTTGTAATAAGATACAGCAAACTATATTTATTTCAAATTA AAGTTATATTTCATATTCATAACCCTGACCAAAACTTTGTGATAGCTGACAGGTAACAAGATAAAGCAAA CTACGTTTATTTCAACTTGTTTCAACAACTTATATTGCATACCTATTCATAACCCTGACCAAAAACCATG TTTAATAATGACCATGGAAAATCCCGAAGTAGGAATAAGCAGCATGAGAATTAATATGATTTACTAGTTT TTTGAAAATATACATCTCTGTATGCTTATCTGTATGATATTTAAGTGGACGCAAGTCGTTGCTTGAGCTA GAGGATCGTTAACGGAGATATATCAATACCAGGTTAATGCCCTTTGAGGATTCTGAAGCACATTTCTATC TCTCTTCTTATCACAACTCATCACATATACATGTACAAGTATTTATTATTCATCAAGTGACTTGCTACAG AAAGTGTAATGCTGCTGCTGTAAATACTTTATTGTTTTCAGGTTAAAAAACAACATCAAGCAAGACTTTC AGCTCCATTATCCTCACGTTGTTCTCAATCTGTCGTCGGTAAAACGGTTTTATGACTTTGTTTTTATTGT GGTGGTAACAATGCCGCGGATGTTTATGCAAATTGTGTAAAGAGACAATTAAAAACCATTGCCAGATGTG TATTTCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds