Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030995926.1 PREDICTED: Strongylocentrotus purpuratus ubiquitin carboxyl-terminal hydrolase 16 (LOC585494), mRNA TCGTTTGCATCTAGATTTTTCGCAGCCGAGCTTCTCATTTGAGCGTAACAAGTCAGATTTCTGTGACCGA ATAATGGTACTTTAGAAGTCTAAAAGCTTTATTCCATGTCCTGAGTTTTTGATATCATATGTACTAAGTC TTTTTAGTTGGGTGATGTGACATTGGAGTTTGGCTCAATGCGAGTGAAGGAAGGAGCAACAGGTCCTGCC GAAATGGGTAAGAAGCGCAACAGAACGAAGCAGACGGACTACCACAATACATCTGATGAAGAAACTGTTA AAGGTAAAGAATGCACTCATCTGGATAAGTCTGTCAGCTTGAACAATGTGAAGAAGGGTCTCAAGAATTA TGGCTTTGGACAGTGTTCATTGTGTGCTGGTGATAAGGGCAGTGGAGGCAGTGTGAAGAAAGATAGTTCT ATTGATGACGTAGATGGTGAGGTGTTTGAGCCTGTCATCTGGCTTTGTTTAGCCTGTGGAAGTCAGGGAT GTTGTCGTAGTAGTCCTGCTCAGCACGCCTTGAAGCATTTTGAAACGGCCAGGTCCAACTCACATCCCCT AGCTGTCTGCCTGGCAAACTGGAATGTGTGGTGTTACAAGTGTGATGATGCAATCAGTCCTTCAGAGAGT AAGAAACTAGGAGAGTGCATGGATTGGATCAAGAAACAGGCTTTCCAGCAGAAACCTGCAGAAAAATCAG CCAGTAAAAAGAAGAGCAGAGAAGCAGACGTTGATGAGAGTCATGTCAGAACATCTTCATCTCCGATACG ATCGCCTCTCCTTACCAGGGAGGGATCACTACCTAAAGTTAGGGGGCTTAGCAACCTTGGCAATACATGC TTCTTCAATGCTGTTATGCAGAATCTGATTCAAACCCATGTCTTGAGGGACCTCCTGCATGAGAAGTGGT CAACAGGGAAACAGCTGGACGTCCCCCTGGATACGCATCTCTCCGTCTCCACCAACCAAAATGGTATCGG TAAAGATGCAGAGAAAGAGCCCCTGGTACCCATCACCATAACCATAGCATCGATGCAGCCGTTGACCTCA TCGTTGATTGAGTTCCTAGATGAGATGCATAAACCAACCAAGTCAACTACCATCAATCCAAGGGCTCTCT TCAATCAAGTTTGCAATAAAGCATCAAGGTTCAAAGGTTACCAGCAGCAGGATAGCCATGAGCTATTGAG ATATCTACTGGATGGAATGAAAGCTGAAGAGATCAAGCGTATGCAACAAGGATTGATATCAACATTTGAT GTAAAGAAAGTCAAGGCAAAGAACTTTGATGAGGCAACCAAGAAAAAAATTAAAGAGTATGGGAGCCACA GTAAACATACCTTTGTTGATACAGTGTTTGGAGGACATCTCATCAGCTCGGTCAAGTGCAACGAATGTTT AAATATCTCTGAAATCCTAGAACCTTTCCTAGATCTGTCTTTGCCCATCACAGAAGCCAAGGGAAGCAAA AGAAACCTGTCAAGCAGTAAGAGCCTTGACAGACCATCAACAAATGACCAGCAATCATCCAATGATGGCG ACAAACAGACTCTAGCTGCGACAGCTGCAGCAGCCTCAGCAACTGAGGAGACGAAACCTCTTAGCAAACA TCAGATCACCAAACAAAAGGAGAAAGCCAGGAAGGAAACAAGGAGGAAAACCAGGAGAAGTAGAACCAAC TCCCAGTCAGAGGACCCTGTAGAAGAAAAGAAGGATTCCCCCATTCAATCAGATAACGAGGAGGAAGAGA GGAGAGAGGAGGGTGTCGGCTACCGAGATCCTAACGATGCTGACAGTGAAGCGTCTGTCCTTGATCGTCT CAGCAACGCAGGGAGTAGCAGAAGGTGCAGTGAACAGACCGCTGCGGGTGACGTTGGTATCGGAGGACTC CCTAACACCCTTCCTGAAGTACCCTCCGAGAAGGAGAACGAGGAAGCTCATGAGATGCAAAATGGAGCGG ACAAGATCGGGAGCACGGATCGCCTGTCCCTCAGCAGTAGAGCTAGCACAAGTAGCAGTAGTTCAAGTAG ACTGAGCCCAGTGCCGCAAGGGAATTCTTTTAAGGCATTGACTGATGAAGTGTCTGGAACGACTGATGAT GATAAGAGAACTGGTAGTGAAGAAGGGAAGGTTGTAAAAGAGATTATGAATACCAAAACCATTCGCAACA AGTTGTCTTTGTTGAATTTGAAGGATGAGGACAAGAGGACAGTTAAAGAAGAAGAGAAGGCTGATGTTAA AATTGAGTGCAAAAAGAAGGCCGAATCCAATTTGAATGGGAATGGGAAAGAAGCACCTAAAGTGAACGGC ACAATGGATGATTCTGATGATAAGGCTGTAGAGCATCGCAAGGGTAGTTCAGAAAGCGCAAAGAGTAAGG AGGAGGAGCGTCCGTTGCAAAATGGTGTGGACTCTGAAGATTCTAAGAATGAAAAACTTCATGGAGGCAA TGAGAGAACTTTAAACGGGCCAACAGGGATAGCTCCCCTTGCAAAGATTCATGAATTAGGTGAAAGCCCT GTGGAATGCAGTCCTGTGGATGCAAAGAAAAGTAAAAACACCTCCAGCGCAGCTACGAAAGAAGAGAGCT CGGTACCTGCAACAAACAAAAACAGCTGCTCCAAACCTGGTAATCAGGGGAAGACGAAACCCCAGCCTAT CTCAACTCAAGCTGCTGCTAAGCTGAATGCCATGAGTCCTCCAACCTCACCTGTTTCACCGACGAGTCGA GCCCGTGTTGCTTCTACCCTTGCCCCACGGTACCAGTCTAAGAACCAAGAATGCTCTGTCTTGTCATGCC TCAACCAATTCACAGCACCTGAACTCCTGACAGGGACTAACAAATTTGGATGCGAAACCTGCACAAAAGC ACACAAAGTGGAAGGTAAAGAGAGAGTGAAGTATACAGATGCCAGCAAGCAGCTTCTTATCCATCAGCCT CCACCAATTCTTACTCTGCATCTCAAAAGATTTCAACAAGTTGGTTACAATCTAAGAAAGATCACCAGAC ACATAGAGTTTCCTTTAATTCTGGACGTGGCACCATTCTGCAGCACAGCATGCAAGAGATACGCAAATAG TGAGAACAGGGTACTGTACGGCCTGTATGGTGTAGTGGAGCATAGCGGTAGATTACAGTTTGGTCATTAC ACAGCCTTTGTGAAGGTGAGGCAACCCAATGAGACACTAACACTCTACACTCTGGGAATTCCTAGAACGT TAAACCTTCTCAATGAGACGTGTGAGCGACAAAAGACGGAGAAGAACAACGAGGAACGGCTCACAAAGGA AAAGTTGCGATCGTCTGGGAGGAAGAACGAAGAAGGCGGTGACGGTCCAGCGGGCGAGAACACGGAGAAG AAGTCAGAATCGCAGAATAAAACAAGCAACTCTGTCAATCATTTGGTTTCTGAACGCAACCATATACAGA GTGCGGTTCTGCCGTTTCATGCTGGGCGCAACGTGAGCATCCCCTCTGGCAAGTGGTACCATATCAGCGA TTCACATGTCACGGAAGTGAGCGAGAATAAGGTTTTGGGTGCCCAAGCTTACATTCTGTTTTATGAACGG CTTGTTTCATAGGAGAGCTTCTTCCATTTATTTAATGCAATGCATATGTTTTCAAAGATGTCCTTCTTCT GATATATGTACCTGTACTCTGTTTTTATGGTTTTATGTACTTCAAAAAATTGAATGTGTTGTTTTATTTA GAATGGGAATGCATGCATCTTTGCATATGAAAGTACAAACTTCCATACACATAGTGTGGGTAATGCCAAT GGCAGCAGATTTATGTTCCAAGTTAAATAAAACAATTTTTTTTAATATGATGTGAAAATAGTTTAATTAC TGTAAAGCTAGGAACTTTGATGAATTCTTAACATTTTCTATTTTCACTGCAAGAAACTTCAGCAGACTGT TAACATTTGTTTTGCCTCCACTAACGAGGGAATAGGGTTCTGCCTACTATTTGTTTCAATATTTGATCGG ATAATGTGGAATAATTGAAACCAAAGTATAAAGAAGCTGTCCAGTTTTCAGTACACTATATCTGGGCAGT CGATAGAAGACAAAATACTGTCAAATGCTTTGAATGATGTGCAAGTGATAAGAATTTGTATTTAACACAC ATTTTATCATGTGCCAACTTGACATCAACACTTGAGTACTTTATTGCCAACAAAAATGCATTTTTTATTT TATAAAAACCCTCATTTTTGCTTCCTCCGTTTGATTATAAAAACAATAAAGTGTCTTTTGAGTATGTTGA TGCGCTGCTTCTCAGATGAATCAGTGAAAAGTAGCCTTTTATAAATTGTTCTTATATTATTCTTGTATTT GGTATAAGAAAGGGTATTTGTGAAGTTGGATATGTTGATGTAAATACATGTACTGCAGCTGAATTGTCAA TATATGAGTTCAAAATCTTTTATCTGTGACTTTCTTACCTCAGAATGATAATGTAGCCCTTTCACGTATC TCTAGAACTAGAACTAGAATGGCTCATTTATCTTTACTGCAACTGACACCCCTCATCCACTATATTTCTA CTCCGCAAATCACTGTTTTGTGAATTCTTTGGCCTGTTTGTGATGAGAGGTGTTAAAGTATAGAAGGGAA GTAGAACAGAAAATTTTAACATTTTCAGCCCTTCTGGTCATTCATTATGTAGACAAATGAGCTATAGTAT A
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds