Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976502.1 PREDICTED: Strongylocentrotus purpuratus neurabin-1 (LOC577610), transcript variant X3, mRNA CTTCTTGTTTTTTTTATCATTTCAACAGGTTCATGAAACATACGCCCAAGATGTCTATGATAGGCGCAAT GATGACATTGATCCCGTTGCAGCGTCAGCCGAATACGAACTTGAGAAAAGAGTGGAGAAAATGGATGTTT TCCCCGTCGACCTTGAGAAAGGATCTGATGGTCTAGGTCTGAGCATCATAGGTATGGGAGTAGGAGCAGA TGCAGGGCTAGAGAAGCTTGGTATCTTCATCAAGACGATCACCCCTAATGGAGCTGCACAGAGAGATGGA AGGATCAAAGTGAATGATCAGATCATTGAAGTGGATGGAAAGAGTCTTGTAGGTGTGAGTCAATCGTATG CAGCCATGGTTCTTAAGAACACCAAGGGACAAGTCAGGTTTCTGATTGGCCGTGAGAAGGATAGTGAAAA CAGTGAGGTAGCAGCTCTTATCAATCAATCTCTCAATCGGGATCGTATCAGTGCTCCTCCATCTCATCCC GCTCCTCCTCCACCAGCTAATAGACATCCAGTGCCTTCCCCTGATGAGGATACCCCATCAGTAGAGATGC CCGGGGAATCCCCTGATGATAATCAGCTGATCCAGGGTACCTATGATCTAGATGATACCCTAAGCAGCGG TGGTGGAAGCTCAGTGGTCTCACCATCAGAGGCGACAGCTGAAGACTATGCTAACCTTAGGATCAAACTC AAGGAGACACAGTACAAGCTTGCCATGGCTGAGGCAGAGATACCCAACCTTAAGATTCAGGCTCTGCAAG CCCAAGGCTGGGAGACAGAGGAGAAGCGTCTGAAGAACCATATAGAAGCCCAGGATCGTCGGATGGCTAT CCTAGAGAAGGGTTTGGAGAAGATACAAACCCAAATAGACAGCATGAAAAATGCCCTCAACGATTCCAAG GAACAGCACGCCGGTCTCGAGAAGAAATACCATAAAGCCAAGAAACTCATCAAGGATCTACAAGCAAGGG AGGAGGAATTAGAGGAGAAAGAACGTCTTCAGAAACAGATCGAAGATGACAAGGATGAAAGGCACGCTAA GGAGGTGGAGCATCTTCAAGCAAGGATACAAGAGTTAGAATCATCGATGAGCAATCAGACTAAACTAACC AATGGCTGGACAGCATCAGCACCTCATAGGGAGATAGTAGGGGATTCCCCTTCTAGTTCACCTGACAATG GTGCTCCCCTCCAGTCAGCTCCACCCTCGTCTCGTGTTCAGGAACACGACGATGACGATGATCAATCAGA TAATGAATCAGACAGTGATCTCTCAGGGACGGAGGGAACGTATCATATCTCAGGGTTACCAGATGACGAT GAAGAAGAGGAAGAAGAAAAGGAGGAGGAGGAGACGGAAGGACTAGGTAGTGAAATGGCCTATGAGGTGT TTAATGCCTTGATGCCCGACTCATCGCGTCTCGATACGAGCGTAGAGAGGTCAAAGATCTCCTTGGTAAC CAGCGCTGATAGCCAATTGGCCAGGAGAAGTAGACCTTCACTCTCACATCTACGAGACAGGGCTCAATCC AGTTCAGAGCTAATGGATGAACTCGTACCTACAAAAGAAAGCCCACCAATCATAGCAAAGAAACCTCAGC CAATGGAACGTACGCAGATGGTACGTGTCCTTCCCACAATGCCCCCTGGTACTACCAAACCCAGCGAGGT ATTACGTAATCAACCGGCCTCTCCTAAGCTCGGCAGGTTCAGAGACGAAGGTCAGAGTTCACCTCCGAGG TCACCGAAGATGGGACGCCCTCAAGTGTCAGAAAAAGAACCAGATAACAGTACAGACCACATAGCCTCAG GTTACCAGAGTCCACCATCTCCTGTCCCTGTACCCGTCACTACAGCAACATCATCATCATCAGGCCTTCC ACCAGCTATGCCTATCTTGAGGTTACAGCAACCAAACACAAGTGCCCATATAGAATCGTCCCCTTCATCG TCTTCACCAGAAGGAGTAGGGGTAAGCCTGGTCTCATCTCGCCCCCACCACCGGCATAAACATGAAGAGA GGGCTGTAGATGTACCCTTTGATCAGCAGCTGAGTCCTGAGTTATCTAGTCAGGGTAGTCGTAGCTCTGA GGATCCTCCTATGTACGCTCCTCAAGATGAGAAGAGACAGATGTTCTCAGCATATTCCCAAGATAACCTT GGTGGTATGCCTGGTGAGTTTGGAGGAAAGAAGAAGAAGAAAGGCAAATACAGCATCTCAGCACCACCAC AGGATGAACCTACCCAGAAGCCTCATCATATAGACGAGCGTCCGGTGTGGGACTGGAATACAACCCATGT ATCACAGTGGCTGATGGCTAACAATCTAGCTCAGTACATCAATGATTTCTCAGCTAACTCTATCAATGGA CAAATGCTGCTACAGCTAGACGGGGCAAGGTTAAAGACGATCGGTGTGACGAACACAAACGATAAGAACA CATTCAAGAAGAAAGTCAAGGAGCTGAAGGCTTGCGTGGAGAAGGAGAAGAAGGCACAGCAAAAGGAACA AAAAGCAAGAGAAAAACTACAAAAGAAAGCAGCCAAGAAAATGTTTGCAACAAGCCCATAGATGACAGTG TATATCAAATTTATTCTTATAGTGCACATCCCAAAGTATTTATTGCAGATTATAGTCAACATTTCTATCT CTTATACTAGGATGCATAAGAAAAGCTCTTTGGCTTCTCCCATTTTTATAGAACATCATGAACTTAATGT TATAGGACTTTAAGGTTTACAAAAAATCACCTACCTGTAGTAATTACTCCTGAACATTGCTTCTTAGACA TTGTATTCAGATTTATATATGTACGAGTGTGTGTCCACCCAACATATCTTTTGGTAACTTTAAATGTTAT GTCTCATGTTAGGCCTCATGTAGATCATGGGATCTTATATGATAGCTTTGCAGGGAGGATGAAGAGGTTG GATGGGAACCACAAACATGCCGCCAAGAACTCATTTTTTGTCATAAATCTGTTCAGAAACTATGTTCCTG AACAGTTCCTTAGATAGAATGTTATTCCACAGGTGCCAAACAATTTGAGTTTTAGCAATACATGCATGCA GCAGGCACCCAAAGTCTTTGCTATGATTATTTCTTCACATAGTACTCCATGCTTTAGAATTCTCATAAAT CTTTATCGGTTCAAGAGACTGTTTTGCTCTGAAGTAGAATGTGATCTAATGATCTCCATCTTCTAGAACA AAAAGGTAAGTAGCATAAGGGTGTATGTCACCTGTCAAAGTATCATGAATTTCCATTTGGAAATATTTTA TGACAAAAACAAATAAATGAGCTGAAATATTGATATTTATAGGAGTTTGAAATGATGCTCTTATAAAAAT AGTCCCCTTAATTTCCAAAATCAGAATGTTTTTGTAATGAAGAAATTAATATATCCTTATGCTTCTTATC TTTGTGTGATGTCTGCCAACCTGTTTCTATGGTGATGGAATGAGGGGTCTCCTACGAAAATAAAATGTCA CTTTTCTTCCAGATTTTGTATAGCATTTAAAAAGAGAATTTATAAATGTGTATTTAAGCAGATTGGTACT CTGGCCCATGTTTTTATATGCCGAAATGTATTTAGAAGAAGAAAAAAAAATCATAAAGGAAAATATACCT CGAATAATCTTGTAAATTAAATTGGTCATTGTATTGCTCATGAGAAAAAATAGATGAAAACTATATTTTG TATAAAGCAACCATTGTCTATGCTGTCACCAGCAAATGTGATATTAATGATATTAAAAGTCACAATGATA CAATATTACTCTGTAGACTTGACTTTCATAGACTTTATTATCAAGCTGTAAACGTAATTCAAATAATGCA CCTTTATCAAGCAATCATCTTAAATGGGTATAATAGTGGTGTACTTTTAGAGCTATTCTGCATCTGTTTT TCCTCCATTTCCCTCCTAACCTGAAGGGATATGTTCTATTTCCTGTAGCCTATTTAGACCTAGTGCCAAT GATGGGAAAGATTATTTCAGTACTTAAAAACTTTATTTACAGGTAATAAATAATCATGCATTTACTCAAA ATCATTTTGTAATTTTTTTAATTCTCAAGAAATGTAACAAAAACCATATGCTTTGTAAGATGAGTTTGTA ACTTTTTATCCATTATCTGACTGCTTATGTGAGAAAGAATATAACTTAATGTTTATGAATATGGCTGTAT GAATTTTATCTTTGTATTTTCATTTTGCTCATTTTACTTGAATGTGTTATTAATTTTATTTACTTTTAAT TGTTATGAGATTCAATGTATGTATATTTCTGTTGATCAAATATTAAACAAGAATAACAGATGGGAAACAA ATGTATTTAAAATTTGGAATCAGATATTATTGACATTCCCATAATAAATTCATATTCCTAGTATTATGTA TGCAGATGAAACCATCATTCAAGTAATTCCAAGAATACTTGTAAGTAAGTGATTTTCTTTATCAATTAAA TGTAGCATTGAATGTTAGGGGCATGAGATGCCAATGGAATTAAATGTGTCTGTGTTTATACTTATGTCAT CTATTCATGTCTTTCACATGTTCGGATAGAGATCTTGCATTTTGAAGAGAATACTTCTAGAAGCTTATGC AACCTTGTTATATCACATTATGTCATCACAATAATGGTTTCATGTCTAAATACAATTCATCTTTTTTCTA TTATGTATAATTCATAGGACTAATTTTATATCATCATGAGTAGATGAAAATTTATTAAGAATTGTTATTC TCCATCTTCTACTTTTTCTTTCATCTTTCATTCTTTGAAACCTTCATCTTCCTTTCCCACTCTTTTCGAC CAATCATATAATTTACCAAGTGTCATTTAGGAGACTAATATCAAGAACAGTCTATGCATACAACCCAAAC ATTAATCAGTTTGAAACTGGTAAACATATGACAATCAATGTTTTTTATAAACTTGATAGCGGAATTGTTG ATGCATTTTTTTTAAATGTGTTATTTGCTTGTCAGGCATTCCTAGTTATGTTTCTGTCTACTTTCATACA ATTTGCCAAATATTCAATGTGATACAAAAGACAGTAATAAACGTAAGTGGGCAAGTGAGAGATAGAGAGA GAGTGTGAAAGAGATAGATATTTTTAATTCACTATTTCACATTAAATTCAATCCTTGATACACTCTTGAT GTTATGGGGAAGATTGTCATGTCAATGTCACACTTAGTCTGACCTTAACTCAATGTTCATCTATTGATAT ATAAAACTGTGGGTTTAGTCTAGATAATTGTACATTTGTATGAAATGGTAACAATCAACAAAAGAGGCCT TGGTTTTTTACACACATTTATAAGGCTTTTACTTGCGCATGCGAATGTTTTCTAGTAAGAATTAATCAAA TTAAATTTGAATCCACTGCTTATTGCTTCGTGATTAATTTTATACTCATTGGGGCATTTCTGATCAAAAT CAGTGTCAATGTCACAAACATTTGCTAAGTGTTAGTTACGCACATGACCTACTTAAGTTGCCTGCATCAT TACAACTTGAATGGGCGATGAGAATCAAACCTAGAGCTTTATGTGTAGTAAAGGCTGACAGGCATAGCCT ACTCCTTACACAGTTCAGAACAGCACAAAGTTACATACATTCATTTGTATGCGTAGTCTTTGCTTCTAGC AGTGACACTCTGAATCATGAACACAACAGATAACCATTGCTTTGGGGTTTTTTTTAGTTCCCAGAGATAA AAAAGTACGAGGATACCCTTTATAGCTTGTAGCCCTGTCCGTTTTTATCTGTATTGGTGACTGTTAAATG TTTACCGCACTTTTCTTATGCTATTGCTGTTTTCTTTAGTTTGTTTTTCTCACATTGTATTAGTCTGTGT GTGTGTAATCTGCTGCATAGTGCAAAACAAAAAAAATATATATGTTCTTCTAATTTGATGTAATCTTGTT TTTATTTGTTAAATTGTAGATATGGAATGTTGGTGTTATTAACAATAATGCCTTTTGTATTATCAAAGAA GAATCAAGAGATATATCATGCATTTGTGTATATATAATGGTTAGTAGATGATAATGTAATATATAAAGAA ACAAAAACACTTTGAAATAAATGGTGTCAGAATGGGAATACAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds
