Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041612836.1 PREDICTED: Lytechinus variegatus serologically defined colon cancer antigen 8 homolog (LOC121418753), mRNA ATCGGCAACTTCATCTAAGGTCAATGTTGGAGGAGAGGCATTTTTAAAATTTTGCACTTTGCACTTTGAT ATTTCGATCTTAGTTTTACTTCCATCATGGATGATGATTTAGGATTCACCCTTGCCTTATCAGGAAGAGG ATTAAGGGGGAGGGCATCAGACTCAATTAATGAGCTGAGGGCAACACTGAACAGTAGTCCAAGGAGGCGT ACTTTAGGTAGTCACCTACCCACACCTAGACAATCATCCTCCAGCCTTTCCAAGAGCACCTCCAGAAGAT CGCAACACAGGAGTTTGTCTTCACCAAGGGATCTTGAGCCAGGAAGTCTTCAAAACACAAGGTTATCTGA CAGTAGAGCATTAGACAACTACAACAATGCTGTAGACAGGCTCAGAACTCTACTCTTAAGCAATAGTAAT CAAGCAAGTACATTGCCTGGCAGAGGTCGAAGGTCATCGGAAGTTTTCTCTCAGAATGGCCAGCATGAGG CTCCCTTTGCAATGGAGGGTACCTACACCTACAAACAGTCCCCTAGACTTCCATTAACAACCAGCATCTC TAAAGTGCACACTGAACCCAACTCGCAACAGCTGCTACAGATTATCAACAGCCAAAGTGCATACATTCAA CAGTTAGAGGGAGAGAATAAGTACTGCAGGGAGGAGCTCCATGGTCTCAAAGGAAGGACAGAGGCGATTG TAGCAGAGAATGTCAAACTGAATGACGAGATGAAAGATATGCTCATTAAAACAGCTCTGGAAGATAGTCC ATTTAGACAGGATGAACAGCCATCTTCAATGCAAGGTAACCAAGAAAGACAACATCGACAACATCCTCAA GCTTCAGATAGACTCATGTTTGCCCAATGGAGTGAAGATCTTGAAAAATTGAAGAAAATGCATGGGATGC GAGTAAAGAGATTGGAAGACCAATTAGCTTCAACAAAATCTGAGTTGGTAAACCATGAGAAGCAGTGCAA TGAGTTGAAAGTGAAGCTAAGGATGGCTGAATCAGTAAACCTTCTCTCAAGGAAAGACAATCATATCAAA GATGGTCTCTGTGTACGCTGTGCTCAAGAAGAGGCTGTTATGACCATCCCCAGTCAGCCTGCGAATAGTA CTACCATTCACAGGATAACAGAAGAGAGGGATGATTTGGTGAGTCGTCTCACTGCTAGCCAGGCAGCAAA AGAAGAAGCCGAAGTGAGAGAAGCTGAAGCTTATAATCAGGTGCAGCAAAGCATTCAACTTGTAGAACAA GCTCAGTTAGAGAGAACAGAGGCCTTAGTACAGACAGAGCAAGCTAAGGAAGACATTGTCAGACTTCAAA GCAGAATGGCTGACATGGTAACGGAACAACAAGAGAAACTACATCTTGAAAGAGAGGCAACTAGGAGAGA GAGTCAGGAAGAAATTGCACAGCTCAATCATAAGGTTGGTAAGCTATCTGAAGAATTATCAGCAATGACC AATCAGCTAGAGAGGGTGACTAGAGAGAAGGTAGATATTACATCAGAGCTGGATCAAGCTAAGATGCAAA TCATGCAACATGAGGTTCAAATCACAAAGGTATCTGAGGATACAAGAGTGTCAGCTACTACAGCTAAGGT ACAGAGGGATGAGGCTATGAGACAATTAGAGAGGCTCAGAGCATCCATGGAATCAGAACTAAGAAGTGAA AAACAGGAGAAATCTCGGGTAAAGAATGACTTATCAGATGTAAGAAGAAGACTCCAGCAGGCTGAGAAGG ATGCCTCCTCATCACGGGAGGAGTGCATCCGTTTGGTAGAGAAACTCAATGCTGCTGAAAGAGAGGCAAG TATTTTACGTTTGTCTCATGAGAGTGTTGAGAAGGGTAACAAAGATGCTCTGAGGATGGTAAGACACCGA GCAGAGAAGAAAGAGCAAGACCTCAAACAAACTATACATGACATGGAAGCCAAGCATAGTTTAGCTGTGA ATGAACTAGAGAACATGTTATCAGATCAGCAAGCCTTGATCACAAAGCTTAGAGAAGAGGGTAGAATCCT TACTGAGAAGTTAGAGAGTGGAACTAACAAGTACAGGTCAGAGCTTCGTCAACTGAGGCAGGTGAATGGT GAGCTGGTGGCCCGATCAGAGCGCCTCTCCCAGCAGCATAATGATATGGAGATACAGTGTGTAGAGCATG GTAAACTGCATCATAGAATGAAAACCCGTCTCCAACAGATGGAAGAACAGAATAACAAGAATGCTAAACA GATCTTTGAGCTCCTTCAGAAGCAGACCAGCTTGATGCAGGAACGACAGGTCCTTAGTAAGGAGGTAGAA TTCCTGAGAAGCCATGGCATCACCAATGCACCATCAGACCTGAACAGGAGTGAGACCAACTGGTTGAATA GTGATGTAGATAAACTCAAGAGATCGGCTGGATCATATGGCAAGGAGGCTATGGTACCAAGTCATGATCA GGAGAGGTAGCATGCCATTTTTCTTTTAAGTACTGATGAAAGGAAAGTTCCTAAAAATATTCATATTCAC ATGCAAACTGAAATCAAGAAAATACAGATGCGTATTTTTTCACTGTGAAATAGTATAACTTAGACACTGT TCTCACTAACATTCTAAAACTAGTTACTGGAAACTACTTTAACATGAAATGAGAATGGTCGAAGAAGCGA TCTTCCAAACCGGTTCAGAAAACCACCTCTCGATGTAGTTTTGAACATCGCTTTGCCTTGTTAAACTGGT TTTAGCGTAAGTGAGGACACAACCATTCTTCCAGAAGCGATCTTCGCACACTTTCAGTGCGCTACTCCAC ACACTGTATGTGGAATGATTACACTGCAGTTTCACATTTTGCGTGATACATTTCACCCCACTGAGAGTGT TCCCATAGCAGCAAGACTGCTTTACGTGAAGTGGTTTTGAAAACCACTTTCGGGTGATCAAATGGGAACG CTAGCAAAGTGATCTTCAAAACTGGTTTCCAGTATACCAGTTTTAAAAAGTATAATGAGAACGATGTCAA ATTCACATAAATAAATTATCCCCCCCCCACAAAAAAAAAGGAATGAGGAAACATAGGGATATACTAAATT AGTGTTTAACAAGAACCATTATCCTGTATTGTAAAAGCTTCATTGGCAATATATTTACTTGGGTTGATAT TTTACAATGAAAACTTATGCACGATGTAGTCTGAGTTTAATGTTTTTCATGTAGTAAGATAATTATTTTG TACTGATTATTTGCATTTGTCACTTAATCTATTTTATATTCTAATATATATTTCATTCAGAGATCAAGTT AATATATTAAGAGTGTAGACCATTATTTAGAAAAGAAAATTATTAAACCCTGGTTCTAAATTAATTGATT TTGTAAGTAAATTATTGAACACAAACCTGATGTTTACTAATGAAGACATGAAGACTTCCTAGTTCCTATT TATGAGTTTGAATGGTTTTTAATCAAATAAAATTACAATCATTGGCAAATAATTGAATTAAAAAAAAAAA TCTTATGGTAGAACCATCATGCATTTGTATTTTAGTTTAATCTTAGACCTACATGTAGCATGTGCATCAT GATGGTATGATATTTATTTTAATACACAAAGTATCATATTGTTTTTAAATTTACTCTCCCACTGCATTCT GAAATAGTAGTTACTATAATTTTGCCTTGATATAAACAGTAATTGCATAAACAAATAACCACTTAATTGT ATGCCTTAAAATGAGAGAAAATAATTTTTCACACATTACTTTATATCAAAATCTTACAAGCTCATGCAAT TAGAAAAGGGACTTTATATTAAATATGCATGGCAAATTGTTGCATAAGTTACAGCAATATGTAATTTAAC CGTCCATTTTTATCAAATTTTTCTATTGATGCTCTATTGGTGCTATTGTTTTAAGAAGGTAGCAAACAGT CATATAACTTGTGTGTGAAGTATGGAAATTCATTTCTTTAACCCATTCTCATCAATTAACATTCCTTTCA TTTGCCCTTTCTTGGTGTTTGTCATTTATACACATTTTTTTAAATATTTTACCTGAAATATCAGTTTCCA CTCTGTCAAAAAAAATTGCAAATCAGTTGATTGTTAATAATTTGTGAGTTGTTGAAGTTATTAAAATGTC ATGTGGACATGCAAATATCATGCGAGAGGTAAAAGAAAATATATAGCCTAATAGGCAATTTCATGAGAAA AAAATGAAAGTTCAGAATATTTTCCATTCCATGGATTAATCAACATTTATGAAAATAGATATTACGTGAT AATCATTATTGGCATGTTCAGTTTCATTTTTAAAAATTCTGAGAAAATGGTTCAGTAAGTACATTAAAAT GGGTTAATTTCATTGATATTGAATGTAAATTGCTCATTTTTATATGTAGATCAACATGGTTAAATTTCAT TATTGAAATTGCTGAAATAAAAGATTTTGAGGGAAATAACAGACATATTTTCATTGAATTGACTGGTATA GTGGTAAAAGTGACACAAAACACAGAACATAAACACAAACTCAAAGAGCATCTGAATTAAATTTCCCATG TGGAATTTCCTTGATGGTATGACATTTCTTTACACAGTACTCTAGTTGATTTTTCTTGTACCTCAGTCAG TATAAAACACATTTCAGTATTTTAGATTGTACAGATTATTCTGTGTATGTTCTAATCAATGTATCTGTGT GTATTGTGTATCTTTGAGAAAGTAATCTTCTTATTTTCGTATTTTTTGTTTGTTGTACTTCATTATATGT TATTGTACTAACTAATTGAATGTATTTACAGTAACTCTCTAAGCCAGTTGTAAAAATTGTGTATTGTGAA AAATTAATATACAGTGCATCCCACAAAAAAGGAAGCCTGTTTTCAGAGATAGATTTCACAACTATTAAAT ATGTTTTTACAATAAATTTGATACCCATGGCAAGAGTGGAATCTCATCTATAATTTGAAACTAACAGCTA AGCAAAAAAAAATAAAATACATGGGAATCTCAGTTTCCTTTTTTCTTAGAGGCACTGTATATTTGTAAAG GTCTGATGTGTTTGGTTCTGTATGCAAATTTCATTCAAAGTTTCAGTTCTACCTTACATCACATTTTAGG CCCGGAAATCGCTGTGTATGTGAATCCCATGAAAGTGTTTAATTCAGTTTGGCGCTACATTGCAGCATTG GTTTTCTGGGGATGACGGACAGTGCTGTTTAGTTTCATTACTTTGTGTGAATTCAGAACTAAATCATGTT TTGTTGAATAATAAGTCACCAGTCATTTATGGCTTTTCAAATTGCAAATACTATGAACCCTGCAACAAGA ACAAAATACAATAAAAAGAACAGTATTGGGGGTAATTGTTGGATTGGCATCGTAACATAGTTTATGGATC TCGTTCATGAAACATACACAAGGGTAATCAGGTTATGAATGATTGTTTTGTGTAAGTCGAGGTGACTCGA TCAAGGTCAAATATTCATTTTGGGTCATGTAAGTATTTTATTATCATTTGAATTTTTTGTGTGTGAGTAA TTATTCAATAGTTGATTTAAAAGTGAGCAATGCTGCTATAGTGAATTGCATAATACAGGCGAGACTGCCA GAGGCATTCCACCTGTTTTTATTAAAATTTGGAGAGGGAGGGGGATTTGCCATGCCAGGCATATCTTTTT AAAAATCACATTTCACACAGCAATAATGAAAACATTTGTGGTAAAGTGTATTCAGTGATATATAGTAATA ATTTGTACAGAAATTTTATACTTTTGTTCCCCTATATTACTGTACTTTTTATCAAATGCATTTAACATTA TTTGTAGCAGTGATTTTTTTTTAATGTATGTTTAAATTAAAAAACAAATTGGATACTAATATTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds