Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997344.1 PREDICTED: Strongylocentrotus purpuratus GTPase-activating protein and VPS9 domain-containing protein 1 (LOC576831), transcript variant X1, mRNA TGGAGTGGGAGGGGATGATGATTTGGGTAGATGACGATTTAATGGGTTGCGCAGCAAACCAACACAAATG AGATGCAAACGGGACTACAAGCCGTGCCGTATGTTGACATCGCATAGGCACATATGTGGGGACGTTGTCT ACTTTGATTGAGGCAATGATGTTGTAGTTAATAAGTTGCATCGAAAAAAGGATTGCAAGATCATGATCAA CTGAGAAGCGAACTTATTCCAAGTGTTCTACTGCATGATTCTTCAAAAGGATAGTCTTCTGGTCTGGGTT CTGCAAGAGATACCACCACCTGACATATAGACTGGTCACATGACTACCACATGTGGCGTATCTGTCAAAA CTCTCTGATACATGACACATACATTTAGAAGAACATTCGGATACCATGAGACCGTGTTTGTAAGCAAGGC TCAGGTTTTACTTTTCCCAAGTATAAACTGTAAAGATTGTTGTATGATGTAAACACATGGCATTGAATAA AAGGTGTTTGTAGTATGAATACTTGTGACTCAGCGATAGAGCAGTGTTTTGTGATTTGATAAGATGGCAG TTACGATGAACAGCGCCGCTGAGCTGCTGTCGCTGGCCCAGCGGCTGAAGGAAGAGAGGCTTTACATCCA GTCTGAGAAGAATCTCCTTCAGGGGCTTCACGAGGAGGTAACCCAGACCTCGGACAAACTCCATCGTGTT GCCTGGATCACCCAACAGCAGCGTCAGACCCTCAACAGTCTGGTAAGGGCAAGCTCCAATTCCCCTCCTG CTGCCTGCTGCTACCGGGCCAACGCCCTGGAGCGGGTCGGGTTCGTCGATGGGTACAAGCAGCTGGGGTT CCAGGACTCGCTGTACGGAGACGTGTTGAACTTTCTTCGAGAGAACCCCTCGATTACGGCTCAGATCTTA GCCCAAGGGGAGAGAGCGAACCTTGAGAGGGCACCAGGATTAGTGCACTCTGTTATCTCTGGTATTTATG GAAACTGTGTCGTGGATGATGATGAGCAGCACTTCTTAATTTTCATTCAATCTCTGATGAGACACCAGCT CTCGGAGAGTGATGATCCTCGTCGGTTACTGAGGAGAGGGCGCTGTGCGTTTGCTATAGCTTTTAAAGTT TTCACAGAAGCCCTGTTCAGTGGGAAACTGTACTTGACAGCAGCGTTGCATGAACCCGTCATGGCTGTGC TAATGAATGACGAAGTCTGCTTAGAAACGGACGTCCAAAAGGCAATGGACCACTTTTCCCCAGAGGAACG GAAGCAGCGATTTGGAACCCCAGGAACTCCGGAGTATGAACAAAGCGTCCAGAAACACATGAACAGCATC ATGGACCAACTTGTGGGACTATGTAACAAATTCATTATTGGACTACACAGTAACATCTACTGCTTCCCTC CTAGCCTGGACTGGATCATCAGTCAGCTTCATAAGATCTTGGTGGATGCAGGTCAAGTGGGGTCAGCGGA CATCCGTATCATGTGTGCTGATCTCCTGCTGACCTGCTTCGTCGGTCCCGCGATCGTTGATCCTGAGCCC TATGGCATCACGTCGGACATCCTGGTGAGCGAGACGGCTCGGTTCAACCTGATGCAGGTTGCTCAGATCC TACAAGGTCTGGCTCTCCAGACGTCGACGACCAGCAAGGAATCCTCAGGCAGGGTACCGGACATCTACGC AAGATTTCCAAAGGGTTGTATGTCCAGCTACTTGGATGCATTGATTGATAACCTGAGCTCATCCGACATG CCACCAACCACCAGCCAGCTCAAAGGAATGACGAGGGGCTCCACCTTCATCACGGAGACAGAGTTACATA GCTTGATTTCATATGTCAGAGATGTGCTAGCCACCAACCCGGACCAGGCCCTCTTCAAGGACCTAGAAGG TCACCTTGCCAGCCTCCCAGCCTCCACCCCTCACACTCCAGCAGGGGGGCAGAAGCCCGCCCCTACCACC AACGCAATTCCCTGTCCTCAGGGTAGCCAGATCACCTCCCCCAAGTCAGGCATCGCTCCTGGAGCATCCT CCCCCAACCTCAGCTTCAAGGGAAACCTCGCTTCTATAGTGTCGAGCAGTGTACTAGCGAGGAGGATGGG TAAGACGAGTACGGTCAGTCCATCTGGTCAAGATGATGACAGTCTTGAGATCACTGGTCAAACCGAATGT GTAATGGTCACTCAGCCCGAGGACGTTTTGGTCATTGGTTTGGGGAATCAAATCAACGAGTGTCCAGGAA TGATGTCAGAAGCTAAGGTCCTCAGTTCGCTACCCCAGAAGGCCAAGAAGAGGAATTCCATAGATGCCTC TCAGATCCGAACCGGTGGTAACCTGGCGTCTATCAGTGAGATGCCCGAGAAGCATCTAAGGTTCTCCGCC GATGCATCAGGAAACAGTGACAACATGATGGAGGCCATGTCTATAGGTGCATCTAACTCTGTATACTCCA TGGATCTGGAGGGTGAGAATGTCAGTAATCTGAGTGGACGCAACACGCCAAGGTCCGCCATCAGTATGGC TAGCAGCACCACTGAACATAACAGACCGGAAATCATTGACTCTACTCAGCTCCCGAACAATACGAACATC ACAGACCAGTTTGGAAAGTTTGACATCGGCACGAACCTCCAAGATGGGAAGAACATGGTGCCAGAAACCT TCAGTGAGACGTGGAGCACAGACGTGATCGGGAGCGACACCTCGGAGCCCATCCCCAACGACCACCTCCA GGAGATAGCCGAGGAGGAGGCCAACCTGCAGGGAGCCACGGCATCCTTCCTAGGGGTCCATCCTCCGCTC AACGATCCCCAGGAGACTGGTAGCGAGACGTGGAGCGTCGATGTGCTTCAGAGTGATTCGGAACAGACCG AGGATAGGCTTCATGAGGTTGATGACAGTCAGTTGGACCTAGCGGGTGTGATGACGGAGCAGGAGTCAGA GCAGCTCCTGGCCAAGGTTGGCACGGAGGCTGGCTCCAGGAGGAGTTCCTCTGGAGAAAGCCATAGCGTT GATAGGAGCTCCAGTAACGACAGCCCTAGTGTGGAGGAGTGTGCTAAGAAAGGGGCAAACCTAACACTTG AGTCTACTGGTTCTAAGCTGGCCAGTCTGTTTCCATCTGATGACCTCTCCTCGAGCCATTCTCTGTCCAG CACCCAGCGACCTAGAGATCCTGCCATGTTTGACCGGTCCGACAAACCTCCTACCGTCCCTGCCCGGCCA TCTAGAGCACCCCCAACATCCAACATCGGAGGGTCTTATGATGTTATCCACACGGCAGGTGACACTGTCC AAAGGAATGGAGTTGGCCCAGATCTGGCCAAGAGCACCAAGTCCTTGACCTCCCTGGACGTGGACAGTGT CCTGCAGGACTTTGATCCTCTCAGCACCCCTTCCCCATCCTCTAACCCATTCACTTTGTCCATGAATGGG AACGTCCCAACGGTCAAGAGGACCAACCTGCCGCAAGGTGCCAAGCCGAAGGTTAGATCATCGCCTCAAT CTGCCCAAGGGATGCCTGTTGGTGGTGGTGGGGTGAGGTATAGTGACAATCTAGGCACCTTTAATCCAAT CTATGAGATGCACAATAAAGCATTCCAACCAGCTGCTGCCAATCAGGACAGTCTCTTTGATGTCAACCCC AACACTCAGTTTGCCATCATCAATCATGGCTTCTCCGAACAGGGGATGCCTCAGAATACCCAGAGGGACT CCAACTACTTGTCCGGTTATGCCAACCCCTTAGCCAGCTTTGACACCCTCCCACCCCCAGGGGCACACCC CTCACACTTCGGACCTCCTTCCTCCCAATCGCAAACCACAACCTTCCCTGTCAGGAACTCTGTCGGAGGG TCGGACAGCGGAGTGAACTCTGGAGAATCAGCGTCCAACAGCGATCACTTCTCTAACCGAGCGGACAGCT CCATCAGTACAGGCAGCAGCGGTAGCATGTCGCTTCTGATGGTGTCATCGGAAAGCTTCAAACCGGTCGA AGCTAATCAGATGTCCAGCGGCGAATGGCCAATCATGGACAATCAGGGTAATGCCAACTTCCTCTCGTCA CCGAGCTCGAGTACGGGTGCTGTGGTAGGAAGCTCAGAAGATAGCGATTCGAAGCTTGGAAGCACGCCCT CGTTTGACAGGTCTATCAGCAGTGACAGCTATGAAATGGAGGGATGTCCTGACAGTCCTGATAAAGGCAG GTCTTGGTTCAAAAAGAAAATCAAGCAGATTAACAGGTCAATCGGATCAGCACGTGCTAAGTCACAGAAG GACAAGTCTGGCGGTGGAAGAGAGGAGCAGGGCTGGTCATCACAGACCAATGCACAGCTTTCTGCTAAGG ATGCTAGAGGCTCGACAGACAACATACAGATCATTCCAAACCCTGCCCTAGTACCAGACTTATTTGAAAC AGAACAAGGCGTGAAGGATGCATCAGTGCCGGAGACGAGCAGTGAGGATATACTCAATAAGTATCGTGAC CTGGGGAAAGGTCGTTCCAACGACCACTTAGAAGCCACGGAGGACAGTGCAACTGATGGGACGAATGCAG ACTCATCCAATGAAGATGATTCCGGTAGCCATGGCGACAAACCGGACTCTAACAGCACCGAACCCAGCAG CTCTGCCGACTCTGAGAACCTGGAATCCACCTACGCTTTCAACGACGCCAAGCGCAAGCTCCGCATCGTC CTCCGCTCGGCCGACCTCCACACGTTCTCCTCCCTGTCGAACCATTCCACGCACTGCCGAGCTAGGGGTG GGGGCGGGGTCATGGGTGACATGGGGGACGGGAAGGAGATGTCACGTTACCCGGAGAATGAGCTGGTGGC CTTCATGAAGGTCCAGCTTGCCGAGGCGATGAATCTTCAAGATAAAGCGTTGATAGCACAGCTGAGAGAG ACCCTCAGATGTGTGGGCAACTTTGATAATGAAGGATGTCGTAAGTTACTAGCAGTACTGCGGGAGGAAT ACGAGGCCAGGTCACCATACATAGCATACCTAGTGAGGACTAGGAAAGGCTTGGCTCTGTCTAAGGCTCA TCTAGAGAGACAACTAGAGAGAATTCAAAGAGACAAGGAGGTGGTGAATAAATTCTTCACCATGGTGTGT GTGAGGTTCTTCTTAGAGAGACAGGAACAGACCATTATCAAGTTCATTTCAGACTTCAAAGCTCTTACCG CTGCGGATGAAAAGACTCACCTAGTCAAGTATTACCTGTCTACACTCAATAACTGGATTCAACAGGACCC AATATGGCAAGCTGCCAGCGAGACCCAGAAGCAGGATGCCGAGCTAGCGACGGAGCGAGCCATCATGAGC CGCATCTACAAGCTAGCCCTCTACCCCAACGGGGACGGAGACATCCTGCGCGATCAGCTCTTCAACCAAC ACATCCAGAGGCTCGGCAGGGTGGTGTCTGGCTCGCACAAGGCCCTGCAGATCCCGGAGAAGTACAGGAG GGAGTCGCCCTGGCCGGCGGCGCAGGCAGAGATACTCAACATCAATGCCTATAAGACTCCTAAAGACAAA GTGCAATGTGTATTGAGATGCTGTACAATCATCATGAACCTTCTCAGCATGGCCGACGGCGCAGCGCCAC CTGGTGCAGATGACTTTGTCCCGGTTCTCATGTTTGTCCTCATCAAGGCCAACCCCCCTAGTCTGCTCTC TACCATCCAGTACGTCAATAGCTTCTATCTAGAGAACGATCCCTACAGCGATAGTGACGGGTCGTCAGGC AGCGGAGAAGAGCGGTACTGGTGGATGCAGTTCAGTGCGGCCGTAGAGTATTCCAAAACCATTGATGATA GGAAATAGTGCTTCTAGTACCTAGAGAAAGACTTGTACAGCAGTGCTTCTATGTCAATATCTTCTATCTA AAGAACGATCCCTACAGCGATAGCGATGGGTCGTCAGGCAGCGGAGAAGAGCGATACTGGTGGATGCAGT TCAGTGCGGCCGTAGAGTATTCCTAAACCATTGATGATAGGAAGTAGTGCTTCTAGTACCTAGAGAAAGA CTTTTACAGCAGTGCTTCTACGTAAAGAATGACCCGTACAGATGTGCTTGTACTTCAGAGAATGATCCTA ACAGCATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds