Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038208198.1 PREDICTED: Patiria miniata ras-associating and dilute domain-containing protein-like (LOC119734674), transcript variant X2, mRNA CTGAGAGTGAGAATTTGGCAATGGAGCTTAATTGATCAGAAGTAAGGGGAGCGCGAAGCATGAAGCCCTA ACGGCTTGGGTTTCAGGGACAGCCCAAGGGCCTCCAAAATTATTTGGATTCTAGACTCTCTGTGGTGCTG TTTGAGGCAATTTCTGAACACTTTAACCAATTTTTTGAGCAAAAGGTCAGCATTTAAACATCATTTTCAA GGTTTATTTATTTATTTTTGTTAGTGTGAGAAAATCCTGTGTAGGCGTGAGGGCGTGACAATAACCTGAA ATTGCGTGTGTCTCACTCTCAATGCGTGAGAGTTGGCAGGCCTGCATCATTTTTGAAAATGGCAATTGGC TTCAGGACTACATTTAGGCGTGATCATCTTTTGATGGAATTTTTTTCCCCAAATGTCATTGGTTAACCCC AAAAAGTTGAACAGAAAATGACAGATAATAAAATATGCTTTAATTTGACATGTGACTCAAACACCTTGGA GAGTTGTTAGTAGTTTTCCTGAATTTCGGAAGTGGGTGTATTTATCGGTGTGTTCTATGGCAGTATTTTT ACCAGTCTGCAACCTTCAGTGCAACCACAAATTTCCCCATTCTAACACCAAGAAGACTGCCCTCTATTGT CCAAACAGGAAGAGGCCAAAGTTTGGGCCAGTGGTTTGTGGGCTGTGTGTGTTTGTTATGGCTGGCGGAT TATTGATTGTAAGTTAACAGACGACCACGACACTCGCCGCCAAAGACTGATTGGCTACAAAAGCTGTCAT CGTACTGCCTTGAAGACATCCAGGTGCAGCGTCTGAGTGAAATCAATTGTCAGATATCCAACATGTTTTC TTGGATGTAATTACAGAAGAACATTTTCTTTGTGCCAGTGTTGTCCACATGTGGATGTTTTATGATTAAC TTTGTGCTTGGTGAACATTTTTGGAAATTGGCAAAAGCAAATGAAGTGTTGATGTCTGCTTCAAGAAACA AATGAAATTCGTCTGGCAGGTGAAGAGCGCCCTCTAGATATCGCTGTCAACTCTAAGCGCAACGTGAGAT TTGTCCTCAAGATGGAGCCTCTTCAATTGGACAACCAACTTGCCCCTCAGCCTGTCTCAAATAATTCTAA CAGTGCTGCTGCCCAGCGCAAATCCCTGTCGCAATTCTTTGGTGTCGAGAGCGCCGACTTGGCTGTGCCG TATTATGCAGGTTCAACTGCTACAAGTCCGACTACTAAACCCAAGTTTGGCTCATTATCACCAAAATTCA ACAAGAAACAGAACTCGGTTGACACTGCAAGCCTCAGCAGCAACGGCAGTACCAAGAGCAGCAACCAGTT GTCCGTCAGTTACGCCAAGCGGTCCAAAAGTATAGGCAACATTGGAAATGGCGGCTTGTTGCTCAAGACC GACACGCCAAACTTCATCAGGAAGTTTCAATCCAGTGAGGGACCCCTGAGAAGCTTCATCAAGAAAGACA AAGGAAATCCAGGGAAGGTGTCATCAAAAGGATCGGGACTGGGTCCTCGACGAAGGTCCCGGGCAAAGTC CCTGTCCGGCATGTTTGAGAGGGGTCTGACCCTCCTTAAAAAAGACGAGGCTTCAACTCCAGTAAAGGAA GTGGCCTCTGAGGATTCGGCTCCGGGCTTGCTGAAGATCTTTGGCGATAAGATCTGCCCAAACGCAACCT ATAAGAGTGTCTTGGCATCTGCGCAATCATCGGCAGTTGCTCTAGTCAAGGTGGTGCTGGAGCGTTACTC GCTTTGCGTCAATACATTTGAGGATTACGTTCTTTGTGACGTCATCGGTTACTACAAGGCTAACCCGGAG AAGGCATCCCGGATTTTAGGGATCTCTGAAGACTTTGAGGAAAAACAGGAATGGATCACAGAGTGCATGA GGGTCCTTGGGGATGACGATAGACCACTCGCCGTCAAGTCCTACTGGAAACCAGAGGTTGGCTTTGCCAG GAGGTTCGAGATCAGACGCCGCGCTGATATCTCTGTTCCAGACACGGACACAATAACCCACGGCATAAAC CTGAACGCAAAGAGGCTGCAGATGACCAGAGCCAATCGGGCATTAACAGATGCATCCCTGGCGAGCTTTC CAGAAGACCAAGACAGGATGTCAGAGGACTTGTCATCTTCCTCTGAGCAGGAAATCATGTCAGAGGAGCC ACAAAGACAGCTTTCCCAGAGCCAGTCAGAGAAAGAGGAAACCGAAGGCAGTAATGAGCAGCTGCCTCTT TGCAGCCTTCTCCCCCCGCAGGACTTCCCATACCTGCTGACCCTCCACGGTGACAGCCCGGAATCTGATC AGATACTCTACCTCCTGGATAGCATCTCCTGCCTGATTGGGCACACACCTGATGCAAAGGCAGACGTGGA GCTGGATTCCTGCGACGTTAACCAAGAGCACTGCAGAATCCTGACACAGTACAATTCAAATGACGATAAT GCAAACCACAATCCCTTTGACATGTCACTGGAACCGGTCGAAGACTCCAAAGTCTTCATAAACGGCACCG CAGTTTCACAAAGAACCAAAGTTAACACCGGGGACCTTATTGGAATCGGTGACCATTATCTGTTCCTCTT GAAAAATCCACTCGCCCAGCTGACGGCCGAGTCGCCACTGACGAGACTCTTATCCCTTGCCAACCAATCA GATTCCTGGACTCATCTAACCAACCTTCCGAATCCAGAGATGGTTTCCCAGCCAAAGTATGCGAGTCCAC GTATTGCATCCAAGGCTCAGGAGTACTCAGCCGACAAGCGGAGACTCAAGTTGTCCTACGCGATGAGACA CGAGGATGAGTTGCTGAGATGGATCGCATCGCTGCTTGCTTCAGGATCCCCCAAGATTGATGGTAGTGAT GAGTTTGTTCTCTCCCTGGCCTACCTGACCTGTATGTGTGTGGAGCACTCGGCTTACAATTTCCACCAGG AGAGGACCAAACGACTGATGATGAAAGTGGCTTCATTGATTCAAGCTTTGGCTTGGGACAAGACTAAAGA AATGGCAAGGACTCAACCAGAAAAACCAAGTGATGTCCAGTCAGCCATGGAAGCACTCCTCCCCGACCTC CAGCTCATTGTCTGCTTACTGACCAACGCTCTGGAGATCCTCAACTTCCTACAGTCCAGCATGGGTGACT ATGTGGCCATGAGCCAGGGTACCAGACCAAACACTGATGGGGATGAGGTTGAAAGCAGCTTGGGGATAGA GGACGAGGCCTTAGTTGAGTTGGAGGAGGTTGTGATGTACACGTTTCAGCAGACGGTCTACTACTTGACC AAGACTTTGTACATCTCCATCCCAAACTTCCTTGACACGAATCCATTTGCTGATGATGGGGACGATGATG ACGTCAAGACCAAAGGTATGGACAGCGTCCTGATGGTGTTCCAAATGACCTTTGACCTGATGCGTGACCT GGGGGTGCACCCGGAGATCACATCACAGCTCTTTGCGTATCTCTTGTTCTTCACTAATGCTTCCCTGTTC AACATGCTTGTGGAGAGAGGTGCGGATGGCAAGTTCTACAAGTGGTCCAAGGGAGCGCAGATTCGGGGCA ACCTGGATGTGCTAGAAGCTTGGGTACAAGACCACGGCCTACAGGACCAATCCAAATTCCTGACCAGGGT TTCCATGGCAATTGACTTACTGGCCACACCCAAAGTGCAGCTCATACAGGCCAACTGGAGCTCGCTTCAG TCCGATTTCTCCGAGCTCAACACCGTTCAGCTTCACCACTTCCTGAGCCAGTACCAGCTGGCTACTAATC AGTCACGTCCAACACATTGGCACCCCCCTGCTGAGGAAATGAAATCTGCCACTGACACAGAAAACCTCCT TGAACCATTTGACAATCACCCGGCCCTTGCGCTGCCTAACCATGGCTTTGAATTGGATCTGCAGCAACCA ATCACCAGCCAGCATTTTATAAACCAATTGCAGGAGTTGAAGAGGCGTTTCCTGTACATCACCTTCAGCA CGGGAAGTGAAGATAAAACAGACAGCAGCAGCCTCACTGCGAGTCAGTCCTCATCTGAGATGCCAAACCT TGGGAATAAGTCGCCATCCAGCCCAGGCAGTGGGGACATCAGTTTTCCTGTCCCGCCTCCCCGGCCCCGC ACCAAACCCAACAGGTACCCCCAGTCAGACTCAGACAAGGAGACCGCTACTGCCATGGAAGTGTTAAAGC GCCCTCTAGAGATAGTACCAGCCGCCCCCGTTTCCGTAGCCAACACGGTGAAGTTACCACCCTCAGAAGG GAGCTCTCTCTCAAAGAACGAGAAAATGAGCCCCCGCGTGTTCACAAATAAGCCACTCTTCACGAACAAG ATGATGAACGCGGTGTCAAAATTGGAGAGTCGTGTCAAAGACGATGACAAAACCAACATGACGAGTTCGA ACTCGGAGCCAAAAGACTGCCATCCAAGTTCTGAAATTGAGTGCGTGGATAGCGTTACAAGTCCTGCCAT CATCCCAGCTATTGTGACCACAGAGCCGTTGGAGAGTTCAGCCCCAGAATCTATGAACCCATCGCAAGAT GGTGGAACTGCCATCAAGGAACAGCAGAGGGAAGAAGCCAGAAAATGTTCAGATGGCCATTCGGAGGAGT TTAAGGAGCCCAAGAAGCCTTGCCCGACTCTCACATCTTCATCGTCAACATCCTCTGTCTCCTCTGCATG CTCAATCGCATCATCTGTCTTAGCCATGGAGACAGGGAAGACACAGAAGAGAAAAGACTCGGAGGAGGAG GTCTTTGTAGTGGACTTGGAGAAGGGAGAGGAGGGGGTGGGGCTTGGACTCATTGATGGGATGCACACCT CATTGCGGTCCCAAGGCATCTATGTCCGCAAACTGGTACCTGGCGGCTCGGCAGTGAAGGATGGCAGGTT GATAGTTGGGGACCGCATTTTGGCTGTGAACGGCACCAGTCTGGTGGGTGCCGATTACAACTGTGCCATG CAACTGATCAGGACATCTGGCAAGAAACTGCGCTTTCTGGTGGCCAAGTCAGAACCGTCTGTGGCTCTGA AGATAACTGCTGCTACCTGCTGATAGCTTGACTGGTGAAAAACACTTGGTCTACGTACCTATATAGCCTA ACAGCAGTTTCATCACCATTTTCACAAACTGAAATGCACGCACTGTGCGCGCGCACTTCGTGAGAACCGT GTAATCAATAATTTTAGGTTTCACGAACTGACACGCAAGCATGTGGCGGAGTTATGATTTGGAGAAAAAC ACTTTGACATGAATTTAATCTGTCCATATACTTGTGGGGTTACAGAAACATGTAATTTAGTATCTTTTAA ATTAAAAAAATCTTTGAAATTAAGATGGGTTTAGTTCATGAAAATGAAATGTACGAAGTGCACGCATGCG ATATTTGGGTATCAGTTCATTAAAACCAAAATTATGCGGTATTGTAAAGTATATATGCACACGTGCCGAG CACTCGCACACCACCGAGTGTCAGTTCGTGGTGTTGGTTGTTGTTTCAGCTCTAACATTATTTGTCGCAA AATGTGCAAAATTATGCACTGCATATGTTTTGTACAATGGTTTTTAATTTGTTGTACCACTTACGCAATA TATCTACATCATTTTCAGTGGCGTAGCACGGTCATTTTGATTGGGGGGGGGGTAAAATGTAGACA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds