Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030997901.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC586735 (LOC586735), transcript variant X1, mRNA CTTCAATAGCTCGCTTATCCGTACCTGCTGCTTTCCGAGGACTATTTAAATAAACCTGGGACGAAGTAAG ACCCAGTCTCTGTCTGGATTTGCACGAGAGTCGAGATCTCAGGGTTATCGTCTGGATTTTTAGGATAAGT ATAGATTGCAAGCATTCTGCAAAAGCATTTTAAGGCCGGATGAGCTCCGAGAGCGGGTGTTAATTGGACC AAAATTCAAGATCGCTTTCTAGAGTTCGGCTCCACAAGATTTTCCGGTCCTTTTTGGTGCTTGAGGTTTA GGCAACGTCCATACACAAGTCAAAAGATAAACCTCCTATATTGATGAGGAGAGCATGGCCTGTCGTGATC GCGTAACCATGATCGCCTACGTGTTGTTGCTGGTGGTCGCCTTCTCGACCGTCGACGCTATGGACTTTTT CTCCAACTTCGATGGCATGTTTGACGACCCCTTTATGCTCATGTTTCAGAATCGGTCGACCTGTGGGCGT CGTACCGTTGCTTCGACGATGACGGGCCCGACCACGCAAGCGGGCGATGGTACGGAGCACGAGGTGGTAG CCGGCGAGTACCCGTGGCAGGTCGCCCTGTATAACGGCGAGATGAAGCTATGCAGCGCCGTACTCATCCA CGAGCAATGGTTGCTGACTGCCGCAAGTTGTATCCCGTACTTAAAGGAACCATACACGGTGATCGCAGGC GCTATCTCACTGCTCCATTCCGACGATGATACCGGCAATGATGACGGTAGTCAACACACGCAGAGGAGAA TGACGTCAGAAATCTACATACATCCTGGATACGATGCCCGACGAATGGAGTCGGACATCGCACTCGTCAA GGTCATGATTCCTTTCGAGCTCAATGATAACGTCAACGTCATATGTCTGCCGAATCCCAAAATGCATCGC GACTTCCGCCCAGGGTCCAAAACCGGAATAGCGGGGTGGGGTCACTTACCCCCTGTTACTGAGCGACCAG GGATGTGCCCCAAACCCACGGGTGACATCCTGAACGAGTGCGACGTCGAAATGTGCGAGACAGACGCCGA GTGCTCAGAAGGAGAGAAATGTTGCCGCAATGGCTGTGACGTCATGACTTGTATGGAGGCTTCACCTCCT GGACCGGGGCCACGCCCTGGTGCTCTCATGGGTGGGGTTATCCCCCTCATCAACCACACCATGTGTAACC AAACAATGATGGGAGCGATCCCAAAGGGGGTCATTTGCGCCGGGCCTACCCCTATGAAGCATGAGGGTGG GGGTAAGGAGATGATGGAAGAAGGGGGCATCGTGGCTCTTTTGAAATGGAAGAGAGAGATGAGAGAGATG GAACAAAGAAACGGCGACGACACCGACGATGATGACCGGAATGTTCTGTTCCGTGGCGTCGATTTGGTGC AGACGATGTCTCTCATCGTGAAGCGCATCGAAGGGTCCGATGGCAGTGCCGACGCCTACGGAAGACGACA GAGCGGGGTGTGGTCGATCGGTATGACGGGCGAAGTGATGCGATCACGAACTGTAAGCGACGGCGATGAC GATGGTGATGATGGGATGGAGGATGGATGGATGAAGGAAGGAATGGAAGGCGAGGTCGACGATGTCGAAG GAGCATGGATGGGTGACGGAATGGAAGGCGGGATGGAGGATAAGATGAAAGAAGACGTAAGAGCCACGAA AGAGAAGATGATGATGACGATGATGAAAAAGAATTGCAGGGGGGACTTGGGCAGTCCGCTGGTAGCCGAG TTAGAGGGGCGGTCGTACCTTTTAGGGGTGACCACCCTCCCCCGTGGGTGTCTCTTCGGGGCCTCCCCGG GTCTCTTTACCCATGTCTTCAACCTGCATGAGTGGATCCGACCGATCTTCAACAGAAAAGAACCAAAACG AAAGCGAACGATGTGTACGGCTGGAGAGTTCTCCTGCGGCGATGGTTGGTGTATACCTGAAGAGTACAGA TGTGATGGGAAGAAAGATTGTAAGCTGGGTACAGACGAAGGACAATTCTGCAAGGGAGCTATGAAGGGGT TCAACATCTATCTCGATCAACACCTCAACCGGTCGACGGTCGCCCGGCCCTTCCCCGTGACGTCTTTCTC CCAGTGTGCTCAGGCTTGCCTGATGGAACCGTACTTATGCCCGGGGTTCGATGTCATCCTCCTGCCTACA GAGGCGGACTCGCCACCCATCGTTTCTAAACCCTCAACCGACGACGGCGGCGACTATGACGACGACGATG GTGATGACGATGTTGACGATGGGACGAAAGATGTACCCTACGATGTGGAGGATGAACGTGGAGATAAGAT GCCAATGATGATGGACGGGATGACGATCATGTGCTTGCTTGCGAATTCAACGTCGAGCGTCGTCGGAAAC AAAGGCAAAGACATATCGATTAGCCGTCTGAACAAGGCCATGATGGGGAAGATGCCATTGGCAAAGCCAG TTTATTTGCACTTCAAGCTTCCAAGACATGCTCCTTTAGCAGCTCTCTTTTCTCCTATCATGAATCTGTA TCTTCCAACTGGGCTCATCGTTTCGCCATCCTACATCCTTGGTCACGACCTCGCCGCTCTCCTAGAAGAC AAGTCGATGGCACTCCGCTTCATCAAGAAACTCCTAATGGAGGACCTCGTCCAAACGAGCTGCATCTTCT GCTTCATGAGTCATCCACGCTGGGGTGCCGTCCGAGAGATGGAGGAGAGGGTGAAGATGATGCGTGAGGA GGCAAAGAATGTGTTGGGGGTGATGATGGACGAAGAGGGGGCAGGTGGAGGGGATGGAGGGATGGAAGGA TACGTGATGAGGGTTAGGGAGATGAAGATGCAGATGAGGCAAATGGCGAGGAATTTCACCAGGGTGATGA ACGGCATGCAGGCGGACTGTGACGTCATGGATATTAAAAGAGGACTGATGATGAGAATCAGAAGGATGAT GGGGAACGCATCTTGCGATATGATGGGGGAGGATGGGGACATGGTAGACGGGGAGCTTCGGGAGATGGAG GGCGGGGAAGACAAAGAGAAGCCGGATAGCGTGATGGCGGTTGTGATGGAGATGATGGAGGAGCTAGGGG AAGTGATGCCGGATCTACTGATGGAGAACATGTACCCTGAGCGGGATGGGATGATGACGATGATGGAGAT GGGCCTTGGTGTTAAGATGATGATGGGACGGGGGAGCATGATGGGGGATTCCTGGGGCATGCTGGGAAAT GGTGACGTCATGTCGTCTTTCCTGACGGAGAAGGTCGAGACGATGATGGGGATGGACCCAGAGGACCTCG CCCAAAATGTTAATACCAGTAAGCTGGTGACGATGATGACGAGGGAGGTCGTGATGATTGGTCACGCCCT AGCAACAGAGAGATGCAACCAAGGAAACATGACATCGGGCGACGCCCAAGAGGGATGGACGCCTGCTATG GATGCTGACATGGACGCGGATGACATGCCCGAAGCAAACACGTTTGATACGATGAGGATGAAGGAACTTG GAATGAGAGCCAAGGTTGGGCATCAGAAGTGGTCCATCGCTCTGTCTCCTCGCCAAGTCAACACCGTAAA CTTCAGGGTCCTTGACGTGAGGGGACCTATGCGCGGGGGCGGAAATATCGGCAAGGGCTTCGGGATGGTT GTTGCGAGAGGACTCGGAGGCGTTCCCATGGCAACGGATATGATCGTGAGTCACGTGATCAGAAAGATGG CGATTACGGATCAGAAGATGATGGATAGGGACTGGGGAAGTCGCGAAGACATGGATGGAATGTCAGACGG GATGGGTTCCCCAATGACCGAGGAAGAGAGGGGTGCAATGGACTGGGACCGGTCAACCGAGGATGCTGAC ACGGCTGCGATGGGTGGAGTTCTTCCAGGAAACATCGACGAGGATATCTTCTGGAAGGTCGTCGAATCGC TCACCGAAATGACCATCACATCAGAAATGGACCGCGGTTCTGATCTCACTCACCTCATCGAAGCCATCTG GAACGGCGACATCGGTAAGGAGGCGTTCATCCACGGAGTCGGACCATCCGTCTTCCATCGCCTTTACGCT CGTGTGATGATGCAGCAAAAGATGCTCGATGCACCGGGTCGGGCTTATCGATTGGGCGATCTCCATCGGG GGAAATCATTCGACGTCTACGGATCCCTGGTCGATGTCGAGCAGTATACGACCAACGAGAGCGACCACGG TATTCTCATGGAATACAAAGCAGGATGGTCGTGTAACCAGAAGAACAACAAGAACATGAGGGTTCTGACT TCACCGAACTTTCCCAGGGCGTATCCTAGCAACGCGCGATGCAACTCCTTCATCTCGGCACCACCCGGTC ACGTGGTTGTTCTCTTTGTGATGCGGTTCAAACTCCAATGGAGTCCCTACTGTCTTCAGGATAGTCTAAC GGTATATGACGAGACGACCCCGCAGAACTGGGTCAAGCTGGGTCAAGGGCCATTCTGCGGGACCACGGTG CCACACATCTTTCGGTCTTCGGGTCAGAATCTTCTGGTGAAGTTCGTGTCTGACGTCTACCATGTTGGAA GCACAGACAAAGGATTCAAAATCATATACGCCTTCCAACCAGTCGCTAGAGCAATGGCCGACCAGGAGGC GGGTCCCTCGTCGTCCAGTTCGGAGCCTGAGATGACGCGGACCGACGCCCAGACCAACATGAAGGTAATG AGGGACAAACTGATGTGTATGCAGATTTCCCTGGGCGTGATCAGCGGTGTCCTCTTCCTCGTCGTCGTCG TCGGTCTCGTCTGGATCCACTCCCACTCCAAGACCAGGCGAGAGAAGGCCAAGGAAGTCTATGACACAAA ATTTTAGATGCTTTATTTGCAAAATTACGCTGTTCACCCATAGCTGTTCAGAGTTTTCTTATTTTCTAAA CTAATCAGTGCTCCACTTCCTCAAATTGGCATTTTTTTTTTCTTATTTTCCACTCCATCAAAGGAAAATG TGTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds