Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT117037.1 TSA: Strongylocentrotus purpuratus WHL22.674010.0 mRNA sequence TGTTCCTTTGTTCCGAAGTTTTCCATACATATCGATACAAGATACGAGAATAACTCAGGGACCACAGAAA ATTGCCTCAGTCTTTCAGAAGCAGAATTGAGTGAAAGGGAAGTTGTTCCGGTTGATATAGCATACAACAA TGTTCCAGAAAAGTATTACAAAGAAAATGAGGATCCAACAAAGTTTAAGTCGAAAAAGACAGGGAGGGGG CACCTACAAAAGGACTGGAGGGAGACGAGTAATCCTATAATGTGTTCCTACAAGCTGGTACGGGTCAAGT TTGAGCTTTGGGGTCTACAAACAAGAGTCGAAAGCTTCGTGCACAAGGCAATACAAGATATCCTTTTACT GGGTCATAGGCAAGCATTTTCATGGATCGATGAGTGGTATGACATGACTGAAGAAGATGTCAGGAAGTAC GAACAGCGCCTCCAAGCGGAGACAAACCGAAAGGTTCACCAGGGTCTAGAGAGAACCTCAAGTAGAGATT CCACCGATGCCGGAGACGACGACGAATTTGCCGATGCCGTGGAGGATCAAAGCGATCTCGCCCAAGGAGG ATCATGATGAAAGCAAATCTTGTTCGCTTAGAGAGGCAGGACACAGCTTCCATTTAAAGAACATTACTAA TGAGAGATTGGAGAGAGTATTAGAATATATATGGTGAAGGTTACCTCTTGAAGGACAGACTTGTTTTCCA GAGAAATATATACATGTGAAAGATCTGTAACAAAATAAATGCAATGTCTTGTGAAGTATTTTATGAATGA AAAGTTGTCAAGGTTATTGTCAAGGTCAGATAAGAGAGGAATCACAATACAATGAAGGTCTTCTTCCCTT TTTTTTTCTCCCTCTCTTTTTGAAGGACATGTAGAAGGATAACTTAATATTTAAGGTGAAGTAGACCCAT ATCTCATCACTATGCAGCGAATATCTTTGCCTGTTAACTTTCAAAGGGTATACAAAGAAAATGTCAGGCG GTGCTAGAAAAATATTTCCCAACTAATAGATGAGAATTCTGTTTTCATGTTCAGTATTTTTTCCTCTCCA TCGACCCCTCCCCCAATCCACCTCTGATAGCAATACGTTTTACCATTCTCAGATAAGAGTGATTCAATTG AAACTAATCATTGAAGTCTCTAAATAGGCAATGCAGTGTACGATATGAGATCATTATTTTTGTGTACAAT TTGGATATATTTCAATTAATTTTTGTTTCGTTTTACATTGGTTTATTCAATTTTTTCTTCCAATTATGAT TGAATGGAAAATAGATTTATTGTTGCCAACTTGAGGAATGAAAAATGATTAATTTAGAAAATTTGGTTAA TGAAACAAAGTCTTTGGCATGTGAACTCTGCAAGACAGCAGTAGCATTGGCTGATGTAATTTACCCTCAA ATACAGGAAATCATGGATAGAATGTGGAAATATTGAACATTATGACCCCTGAAATTGAACTTATTTCATT TGGATATCCTTTTCACTACAGAGATGTAATATTACCTTGAAGTTCCTCTACGAGGATGATATTAGTAATG GGATTAAACCCAGGGGAACAATAGTATTGGACACACTGGCTCTATCTTACTTCCTTCCTTTCACATAAAG ACATAAAGCCAGAAGCTAGGGCATTAACTCTTTATAAGTATAAAGTATATAATACCCTTTTCTAACTGCA CTCTATCGGAGTCACACCGATGAAAATACCGATTGCATTTTCCTTATGTAAACAAAGGTGAAACCGCAGT TTTCCCCCTGTCGGTTTCTAACTGCCGGTGAAATTCACTCGCTGTGGCGAGCCCTTGCCGGAAGTGAAGA ATTATTACGTAATTATTAAGCCCGCGCTCCATCTAGCTAGCATGCAGCTTGTTCAACCATAAGTCAACAA ACACAGCTGGTTACGGTAAAGCGCGCGTATACTGCGACCTTTGACCATTTTAATCGCTGTTTTAATCGCC CTTTTCTCCCGAACGTTTTCTAACTGCACGTTTCATCGGTGTCACACCGATAGAATGAGAATTTCTCCTG CTCTAGAGCAGGAGAATTTAATCGCCTATTTCTCTTCTTTTCATCGGCTATTTAATCGCCTTTTTCTCCT CTGTTGCTTTCTAACTGGCACTTTCATCGGATGCGTCCGGATGCATCCGATGAAAATCGGTGCAGTTAGA AAAGGGTATGAGTTAATGCCCTTCTGGCTCCAAACTGTTATATATATCGTCCTTGTTTTCACGAAGTGAC GGTAGAGAGGAAAATCGTAACGCAAAGTGAATGCAATTTTTTTTCACTACCGTCACTTCGTGAAAACAGC GACGATATGTATATACTTACATATATCCTACCTCTTGTGTTTCCTTGTGAATGTTGAGAGCAAGAAGGGC ATTGACCCTATATTAAGGGATATGGGTTAAGGCCTTTCTTTTTCTCAGGGTAACGACTGTAGTTGTGATT GAATGTTAGGTTACGTTTAGGGTTAGGGTAGCATTAGGACCGTCCAGGGATATCAATACATATGGTGCAG TGTTTGATTTGTACCTTAAATGTTGTACAGCATCCTTTAAATTTCAAATACTTTGCACTAACTGCATATA TCACGCTATTACCTCATTTAGTTTGGTATGTTTTTTATACAAAATTACAGTCGTTATTTAGGCTCCACAA TGAATCTCTCATGTAGGTTTTAGGGTGATATTTTAAACGTGATGATGCACAAACTACTGATTTAATGATT GGTCCTCTCTGAGATGTACATCAGTAACAAAAAGAGCATACAAAAAGCCGTACATGGATCGCTGTTCAAT CTTACATCTTATTATCATGTGCGATGTGTATGCTATGTATAAATTATGTCAGGGTAATTTGTTCTCGATT TGGCCGTGTATATTGCAATATTTGTTTGCTATATTTGCACTTATCACAATCAAATTATGTTGGGCAATGT AATTTTGTTTCAATTTCTTGTTAAAGATTGTAATTAGGAGGGTGTTTATAATCTGTTTTGGTTAGAGGTG TTTGGATGTAATCTTTCAGCGGCTTTCAGTATTTCAACTTTATTGCTTGTTTATCATTTGTAGGGCAAGA TGCTCGTGAATTTATCTTGCCATATGACAAGGTTTCAATAAGCTCCAATGGCAAATGCGATGTAAATTGT GCAATCCTTTGCTTTCTTTCTTTCATATTCTTTCTGAATTATTCGTTCTAGATTATAGTCCTAAAAATAT CAAAGGTTGGTGTATGTAAAGAAGAATGTTATATTGATCAGTTATGTGATCAATTAAATCTATAAAATGA TGATAGTAATGGAGTAATACAGAGAGACCTTGTTAATACAAACCCGAGGACCAAGAAAATTGAAAAATCA CCTTTTCTTTTCCCTTCAAATTGACACCCTGTTATAATCAGGGTGATAAAAGCAGTAGAATACAAAGAAA TAGGACCAGCAAAATTGCTTTGTTATAACGGATGTCTGTTTAACATACCGGTGTTCTTTAGGAAGTGGTT CTACTGTACGGGCAAATCCTGTTACAAGGAAATGTAATAGATGGATCTCAGAAACATGGAATATTGTTTT AATAGTATGCAGGAAAACAACACAGGATACTTGAACTTTGTAGTGCATATCTCTGTATGTAAAGCTCATG TACATGTGTAGATGCAATCAAATGCATATGTAAAATGAGAAATTCTCCATATCACATATAGCTCTCCAAA TCTCAATTCGTGTAGCACGCCATTTTTTTTTTGGCGTTCAAATTGCTTGGAAGGGTACCTCCAATGATCC TCATTACCAGGTCCCTCGGAGAGGACCTAAAGCCATCGGCCGTCTGGTTGCTTACTTACAAGCATTTATG CTTTCTTAGCAGTCAGGTAAAATAACCACCAATAACCAATTATATTGTACAACTCCAGGGACCCATTTCA CAAAGCCTTTTTTCAATGACAAATGACAAAAATCAGTGACAATTCTGCTGATAACCAATCAAAAGCAAGG ATTTCACTAGCTTATAACAAAAACTGTCATCTGTCACTGATGACTAGTTTTGTGAAATGGGGCCCAGAAC TAGATGTATTAGCATGACAAATGCAAAAGATTCTTGTATGCAGTTACTATTTAGCTATTTTAATATACCA AGAATAGAAAGGGTCTTTTAGGTTGGGTCATTCTGAAAACAAAACTTTCAATATTGTTATGTGCGATTAT TTAATTTAGTATACAATTCATTTGATAATGGTTAACTGATGGTAGACATTTGTGGATGCTTTACTAGGCC TTCACTATACACTTCTTACCCATTTAGATGACAACTTCTGCTCATTGTTGTAATTCTATAGTTATCTGTT TAGGAACCACCTTTTGTCATGAGGTATGCTAAGGGAAGTTGCAATGAAGTGGAAAATACATGTATATAAA AACTATTCATAGTGCCCACTCCCATGAAATATTTCAATTTGATGCCCATTGTTAAGATGGGGTATCAAAG GTTTAATACTATGTCATTGAATAATTGAGCTTAATATATCGTCCTTGTTTTCATGAAGTGACGGTAGTGA GGAAAATCGTAACGCAAAGTGAATGCAATTTTTTTTCACTACCGTCACTTCGTAAAAACAGCGACGATAT GGTACAATGTTCTCCAAAAGAGATATTGACTTGAAAAACGGAATGTTGTACTTTTAGATACATGTTGAAA ATACTTGTAATACTTGACCACATGTAAATCAAAACCCAACATTGGGTTTAATCTTGGTCTGAAGTTAAGC TTAGCCTTTTCATTCACCTTTGCTCAAAGTAGAGCTTGTCCCACTGGTCATTGCTACAGAGCTAAAGATC AAGTTGTGGAGTCTGCCCTGCCCCCAAAAATGCCAACGCCACACAACTTCATGGATACGATGACCCATAA TATCAATCTCAACTTAGAAGCCATTCTTAAGGTTGTGACTTAAAAGAGGGAGGGGTGATAAATATTGAAT GCCATCTCGGCTGCGGCGTTCACATGATGAGAATGATGAATGTTAAGTTTTATGAAGAAAATTTAGACCA AGATCCAAGTGTTCCCTATGTGAAACATGATATCGAGCCAGCATTGTCTCAATGAATTTTCAGAATATAG ACCTATATTTAAGATGGGTGTGTTTTTTTTTGGGGGGGGTGGGGATGTTGGTCTTATACCATATAAAATA TGCTAGTTTTACAGATTTTGTAAAAATGTATTATTATGCTGAAGGTTGATTAAGTTTGTGTGCAGGAAAG GGGATATTATCAGGTGGTGCTTTTCATTCTCCAGTTTATGATTAATGAGATGATATCTAATATTTTTCAT ACAAGTATATTTATGGCTATTCTTTGTCAAACAGTCGCCTAGGTTTCTGTCAAGTGTAGGGCATAATGAT ACATTAAATACACACACACACACACATACATGTTTATATATATCGTCGCTGTTTTCGCGAAGTGACGGTA GTGAAAAAAATTGCATTCACTTTGCGTGACGATTTTCCTCACTACCGTCACTTCGTGAAAACAGGGACGA TATATATATATATCCTCATGATGTAGTGAACATTGATAAAAAGAATATTGGTTATTGGAAGCTCTGAATC ATTTGTCATCTTGTGAATTGAGATTGAAACGATATTTGTTAAACCAAATTAACTTTAACAGTGATGTATA TACTTGAAGCAATAACACAACGAGAAAGGTATATGAAAACAGTTGAGTAAACATTGAACATTTATTTTTT ACATCAAATTACTTGAATATGGGCTCAAGTTGAACCAACCATTGCTTTCTTTATATTAAAGAAAGAGGAT AGCAAAATTTGGGATTGACGAATATGATTTTAATTGTTATAGACAGATGCAAACGTTTTGTACAAAGGAA GATGGGCACTAAAATGTTATAATATATTTTGTTAATCATTGTTTGAAAATGTAAAGAAGTAAAAGCTTTA GTTTACACAACAGATGGCAATGATGGTATTGATATGCAGCTCATGTTTAACATCAATTAAAAAAACAAAA ACGATAATTAACGTTTTATTGATTTCAAAACACCTAATATACAAGGAAAATGAATCATACTTTAATATTT GTTCATGTACATGTAAGGTTTTTCTACTCCGAATACGACATTATCATCTCACTGAATCCTTCCCAGCTTT GTTAAGAACTGAAGAATCTTCCATTGTTACCAGATAAAAAATGACTTTGATTTTTTTAATGAATGCTAAT GCTGCTGTGGATACTGTAGAAATCTGATCGCATTTTCCTCTTTTTTCCCCCCTTTTGATTGGCAGTAGGT TTTTAGAAATCAGAAGGATTCAGTATGAACATTTTTTTGTTTCTCAAGTAAAATAATGTTTAAACTTTTT ATTGAAAATTGTCAAAAAGCCTATATCAAGAAAAACCTTGCACAGAAATGTGTATGATTTAATTTAGATA TATATATATATATATATATCAATTATTGATTGTTTTAGTATTGTATTGATTTGGATGTTAAGGTTTACTA ATCGTGATACTTGGACACTGTTTTTTTATATACAGAAAGCCAGACGATAACTTTTAAATAGTTTCATTTG GGCAATGACGAAAAATGTATTGCAGTGACTAAAAAAATATTCTTTTTTTAAAGCCCAGTGAAATGTGAAC TGGTATTATTTGATTGTGATTGCATAACAAAGAAAACAAAATGTAGGCGTTTCCCACTTCAACACATTCA AAGATATTATTTTAATATTTAGTCGCTGAAATCATTGAACGCTTTTGAAAATATATGTGTAATTCAACTA TTTCAACTTGATTTGAAATTGTTAGCATTGTTAATCCTCCAACAAACTTTACACTGGATTAGTTATAATC ATTCTTACTCACAGTTTTACATATTGTTTGTAAAGGAAGTGTGTATGTGTATTGGGTTTTACAGACATGT ATTAATCGTGTATGACCATTAACGTCTATTTAGTGACCTCTCTCCGCATCGTCTAAGAAACATGACTTTG TTTTGCCCCGGGGTCCATCAGCTTCAAACCGCCTAGAATAAAAACCAGTTTGTCAGGCAAAGAGCTGACT GCAATGCACATTTCTTTCCTGGAAACGTTTTGCTTGTTTGTTAGCATCAAAGCATCTATCAATAAGCAGC CATTCTGCAAGGTAATTATGACTATTGCTGAAGCAAGTGTAACTGAAATGTGAAAAGATATATTGGCTAA TTCCTTTTTTTGAAATTTTTTTTTTTCCTTCTTTCTTCTAATAACATCCATTACCATTTCCAACATTACA GAGGGTTCTACTAAAAAAAGCATTTATTCTTCGTAGTATACCGGGCCATCTGCATCAACACAGTAGTGGG TTTCTAACTTAGAAAAAACTACCAAAATGATAGTTCACAAGAAATAGTAACCTTGGTGAACGTATTCATT TCAAATCTTCTTACAGAGTATTATTTTGTTTGCTGTTTAATATCATTATTTATCAACAAGTACAAATATA TAGATTTGGTTTGGTGTAATACGACTTTAGAATGGTGTAGTTCAGAGGAGAACATAATTAGAATATGATG TGTAAATATTTTGTATATATATATATATATATATATGAAGCACAGACAAAGCATATCTCATGTCTATTGA AAAAACCAAATGAATTTATCGAGTAATAAAGATATCAAGTATTTCTGGAAGTAACCTCGTGTCTATAGCC TCTATACTATAGTGGGTAGTCGCATTTGGAGTGTCTCAGAATTTCCAGTGCATATAAAGTGCATATAAAG TACTTGTAAAATGTCACCAGAGGTATCAGAAAGAGGGTAGGAGCTGCAACAGCCCCCATAATAATACTCA CATTTGTATAGCGCTTAATTTTAATTATTATTACCCCGGTCATTTGATTCAAACGCTTATCCTCAACTGG TTGTGCACACACTCCGCTCCCTGAGGAGTATTCCGGCCAGGTGCTGTTTTAAGAGGGCACATGGTGCCAA TCCAACTACAGGAATGTTTGCATTCTACCGGGTTCCTATTTAATACCTGGGCAGGCTGGGTGGAGAGTGG GTACATCATTGGGCCGTTGATCACATGGTTTGCGGATTAAGTCCTGCCGTGGTGCTTAGGTCCTTTGGCA TTTAATACCTGGGCAGGCTGGGTGGAGAGTGGGTACATCATTGGGCCGTTGATCACATGGTTTGCGGATT AAGTCCTGCCGTGGTGCTTAGGTCCTTTGGCATTTAATACCTGGGCAGGCTGGGTGGAGAGTGGGTACAT CATTGGGCCGTTGATCACATGGTTTGCGGATTAAGTCCTGCCGTGGTGCTTAGGTCCTTTGGCATTTAAT ACCTGGGCAGGCTGGGTGGAGAGTGGGTACATCATTGGGCCGTTGATCACATGGTTTGCGGATTAAGTCC TGCCGTGGTGCTTAGGTCCTTTGGCATTTAATACCTGGGCAGGCTGGGTGGAGAGTGGGTACATCATTGG GCCGTTGATCACATGGTTTGCGGATTAAGTCCTGCCGTGGTGCTTAGGTCCTTTGGCATTTAATACCTGG GCAGGCTGGGTGGAGAGTGGGTACATCATTGGGCCGTTGATCACATGGTTTGCGGATTAAGTCCTGCCGT GGTGCTTAGGTCCTTTGGCATGACATATTCTTTCTTGGAGAGATGTGTTATTTCTTAAAATAACCGTTGT GTAATTGTCCGAAACGTGGAGACCATCTTTTACTTTGAAACTGAAAGATCTAAAAATTCTTATCAGAACT ATAACCACAACATG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds