Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT096822.1 TSA: Strongylocentrotus purpuratus WHL22.723280.0 mRNA sequence GATGGAGCCTGTAGCCAGGATGCCAGACGAGGACCTCCTACATTCAGAGGTCGCTATCATGTCAGGTGGG CGGGATCAGAGCGGACGACCTCTCGTGACCTTGCCTGCACAGAATCATGGGATACTGGAGTCAAGGGTCA TGGGGAGCGGTCTTGATCGTATCCTGCGCTACTACATCAACATCACAAGCCCCACCACCAAGGTCCATGG TTTTGCCTTCATTGCTGATCTGCGTTTTTCAACATTAGATTTCATCTCCATGCTCAAGTCTTCCCTCAAC AGTCTACAGGCTGAGACAAGCAGTTCGGTCGGTCCATTCGTGCTGTACCTGATCCAACCCATCGACAAGA AGTGCCTCAAAGACACCCAGACCTTACTCGCTCTCAGGCAGAGTAAGAAGAAGAGCAATAAACACATCCC ATCTACCCTCTTCCAGACCGTCATGGTAGTAGATGAAATGGACTTGTACAACCATGTTGATAAGAGTCAG TTGACTGCGGATCTTGGCGGATACCTGCAGTACTCACACAGTGCTTGGGTTCGGTTTAGGAAGACTGTTG AACCTTTCTTTGTGTGTTACGAAGAGGTGATCCCAAAGCTGCCTGATGCCTTCTCCAGGCTTGAGGACCT GGAGAGTTATGATCTCGGGGAGACGAGAGAGGATCTAGAGAGACAGCGAGAGAACATGCAACAGCTAATC AGAGATCTCTTCAGGGAACTTGGCCTAGAGTCCTTGAGCCAAGAGTGCGATGACCTCCTATCCAAGATCA ACCAATCTGACATCGATGAGGTGTATGCCGCGGTGGCTCAGAAGCCTGTCTTCCGTGAAGTCCGTCTGCT GGCGGAGTACTGCAGGGAGAAGCTTACCATGATGAAGCAGAGGCTTGATGCGGCCAGGGACAGGGTCGAA GGTCGCGTGGAGGATGAAATGAAACGGATCGATCTCCTTGAGGAGATGCAGAATCTTTCAAACTGGTTAC TGAATGAAGGTCCGACAGGGCTGAAGAGACTTGAGATAGCTGACTCTCTCGGAAGGGCGGAGATGTTATG TAATCACTTTGAAACGGGTGTGGCGTCACTTGCGGTGGACAAATTAGCACAAGCAGACGGCCTAAAAGAA GAGTTTCAAACACTCGTCAGTGAAGGTGGCAACGGGTTTGCCAATTTGAGGAGTGCGGTCAGGGCTTTGG AAGGGCATGCCGAGAACTACCAGAGCATGTTAGATGATCGGCGCCACGTATTGTCTACTGTGAGGAGCTT CTATGGTCTGTATGACAAGATTGCAAGGTGGTGCGTAAGAGCACTCAAGTTTCTTCCATCCGACATCGTC GACGTCCACAACGACATCCGATCGGAGCGAACCAAGAGTCGTCGTCGTGGCCAGGACGTCGGAGATGCGG AGTATCGCTGGATCGAGGACTCGGAGCGGTTCCTTCGTAAGCATCCTTCGCCCAAAGAGGAGGATGTGAC GTCGATGATGGAGTATGTCGAGACGGTCGGGGAGAAAGTGAGGAAGAAGAAAGCCAAGCATTTAGCAAAC AGATGTGCTGTTCTTCTAAGAGTCCTGAACACCAATGACCTGGCCAGCGAGAAAGATGTCCTCCTGGCGA AAAAGTGGCAGGGCGAGGTCGTCGGTTCCCGTGATGACAGTCAGCGGGAGAAGACGAAAGGTGTCATCCG TGAGAGGAAGGACGGCGATGGGGTGGAAGAAGCAAGGATGGAAGCAGAGGAAGAGAAGAGGGAGGAGATG GAGTCTGAGGTTGATGATCCCTTGCTGAGAAGGATAGGGAGGCACACACCGAGCAAGGAGGTTGAGGTCA GAGGTCAAAGGTCAAAGAGACGATCGTCAAAAGGGAAGGTGGAAGAGAAGGCAGACGATAGGAAGAGCGA TTCTGACGGGAGAGGGAGGAAAGTTGCAGATGAGGAAAGGAGAACTGACGATGGAGCAAAGGAAGAGAAA GAAGATGTAAGAGTGGAGAAGGATAAAGATGAGAGAGGGAAGGAAAGAGAACAGTCGCAGTGGATCCGAC CTAGTCAGGATTTCTGGGCGGGGCGGATCCCGGGTGTGGCACGCCAGAGTCAGCCGCAAACTGATGAAAC GGATGGAAGGGTTGCGCAACATTATGATAATGTTGGGATGCCAGTGCAAGATGTCCATCCACACATGGCA GGCAGACTGCAGGGTCCTGATCAACAAGTGCAGGATGTGAACTCTCCTCATCTTACTGCTTCCAATGCAG GTGGATTTCAGCGTTACTTGAACAGGAATCAGAATGCGAATCCATCTCCAAGCTATGTGAATGGTCACCC GCTGCATGCGCTTCATGGGAATGTTGCACCGCTCCATCATCAGCAGGTGGGTCCATTCCAGGGCATGCCA GGCCCCATTAACCAATCACATCTGGGTACTTTCCAAACTCGCCAATCACAGTTCCCTGTTCATGGGCTAA ACCAATCACCTTACAGTATTCCACCCGGGAGTGACGTAGCCTCCAGACAGCATGTGCAGGTGATGAACAC CTCAGCGCAGACGTGCACATTGTATGATCCTGTGACGGGCTTACCATATCAAGCGTACCTTCAATCTCCT AGAAGCACAAGCCTGCAGGGAGATCCGCGGTCTACGGACTATCTCTCTGATTCCCAACACAGTACCCCCG GGCTGGGGCATCACAGGGGGCAGAGACTGGTAGATCCGCACATCTCAGGCATGCATGCACTCCAAGCACT GGTCGGACACCCTCAACATCGGGTCACCGGTCATAACCGCACGCATGCTCTCAACATTGGCTTATCCTCC ATGCAGGCTCAGCACAGCAGAGCCAGCACACCTCGCAGCGAACACAAGAGGGAGCTCTCACCGTACGAGG ACGTCCTTAGTCGCATCGGGCAGATGCGCACAAGAGCTCGCCGCGGGAAGAACGGCCACGACAAGTCAAA GCCGACATCCAGAGAGATGCGTGCGGCAAAGTCTGTCCCAAACTTGAGTAATTTATTAGCAGGTGTGCAC ATGGATGGGGCTGGGAATAGATATGGCGATACTGGTCTTGACCTTGAGGGGGATCGCCAGAGCGATTACT ACGCCAGATTGGCGCATCTGGATGATCAAACGGGACGTTGCTCGTCGGAGCATGCCACCAAGAAATGGGT CAGCCGTCTGATGGCGGATGATCTCCATTACGCAAATTCGTCCAGCTTGCGCTCAGCTTCACCAGCTCTG CCCTCATCAAATACCCCTAGAAATCAACCCCGTCCTCTTACGCCACAGGAGAAATATGAACTTGAATCGC TGACATCGCTTCTGAATGAGAGCGATGATGACGACGATGATTCCGCTCCTGTCTCGAATTCACCGACGAG AGACCGGTTTAGACTTGGTGATATATCCAGTAGCCAAACGCGAAGTAGAGTGTTACCAACCAGACCCCCA AATATTGACTTTGACGCAGATCAGCGAGAGTTGGATCAAATAAGGCAGAATTTGTCTGGGTCGTTTGCTG CACCTGGTAACAGTGAATTTGGCGTGACTTTTGACCCTCTGCAAACAAATGAACTCTCACCAAATCTGCA TCACAGTAGTCTCTCATCCAATGAAATATCGCCACTTCACTATCCCTCAAGCCATAGTACTCAAACACAC CCCCATCCAACAAGTCAATCCTCCCATGCTACCTACAACTCGGCCTATCACAGTTCAGCATCATTCGCAG GGGCCAATCAGGGAGGCTCCTCATACACATCACACCATCAGAACCAGACTGGTCCATTCAACGGCAGGGG TGTTCCCAGCAGTCGTCTGCCATCAGGAGGAGCGGAGGGAACAACGCTAGCACCTATGACTGAGCAGATG AGGGAGTATTTTGGTGAGGTGGGAGTGACCGAGGAAGAACTGGTGCAGCAAGGGTTGGAGGAGAGATTGA GAAACGTCCATGTCAACCAGGTGCAAGAGAGAGCTACCCGCGACCATCTCAGCACCCCAAACTTCTTAGC CGAAGCCATGAACACGCTGGTCAAACTAGACTCCTCGGCCGATTCCCAACTACCAGTAGGGCTCCCTCTA GGGGCCAGACACATGCTGCAGCGCAACCCGAGCCTCCAGCTCTCAGACGAGGGCGTCATCATTGATGGTG CATCATGGGACGGGACCCTGGAGCCCGGCAGCGTCGCCACCACAGAACGGGGGAGTGTGGAGAGTGGAGT AGGGTCAAGGGGTCAAGCCAGTAACCCCTAAAGGTCAGAGGTCATGGAGGACATATCAAGGCAACTGAAC AAATTCAATTCTATAAAGACGGGTTTGTTTTCTATCAACAGTGAACAACATTTTAACTCATGATGATGAT TTTTCAAGTAGGGTCGAGGGGTCAAGCGAGTAACCCCTTAAGGTTAAAGGTCATGGACATATCAAGGCAA CTGAACAAATTCAATTCTATAAAGACGGGTTTGTTTTCTATCAACAGTGAACAATTTTTTAACTCGTGAT GATGATTTTTCTTCCTCTCATTTTGAAATGAGTAGCATTTAAGAATGTTTTTAATGACCTGATATTCGTA TTCACGTTATGCACAACAGGATCAAGTGCGTTATTTATTTTATAAAATAGCGACACATGAAAGATAAGAG TTAAGACCTTGCAGGCTTGCTAATCACCAAAAAGTTCACGGGATTCCACTTGCCTTGAGCAAATATAAAA TCCATAGAACTTGAATCAGACACTGAGACGGCTGAAATTGGCATGCCCTGAAATTCCTGGCTTCATTATA AAATCCAAAAGTCAAAACAGGCAAAACAACGCATTTACAGTTTGAACATAGATTACTTAATATTTACAGT GGATTTACAATCAGTTATTATAGATATTCACATTGCATCCATGAAAATGAAAAACTTTCTGGATGCTCTG CTGCTGATTTATCTGGGACGAGCTGAATTCGACAGTGGGCTGGCAAGATGCAGAATCGCCGCCCTATGCC ACGGTTTCTTGACTAGAAGTTGTAGTAGTAATAGTACTGTTGAATGTAGAACTAGAAGAAGAAGGAGCAG TAGAAGCACTGGAAGAAGTAGCAGTAGTATTAGAATTACACGTAGCAGATGTTGGGCAAGAATGAGACCT CGCTGAGCTGTCAAAATACCTGTATCATCACATGGTCTCATACTTGGCAACCAGCCCTACATCTCTGCTT TGTCTTGTTTGTTTATTAATCCCCAACAACCGGATTTAAATAAATATTAAAACCAAAACAAACTAGCCCA AGTTGTTGTTGTTAATGTCCGTGGTGCTTGAAACAACATGGGGGTCATTGTCGAGCCTGAAGAAAAAGTG GTCTACATTCTCGAAAAAGTCTGACATGATTCTTGTGTAGCTAGTGTATGTACACATACTGGGCAACCGG CCCTACATGTACATCTCTGCTTTGTCTTGTTTGTTTATTAATCCCCAACAACCGTATTTAAATAAATATA ACAAAACTAAACAAAGTTACCTGAGTTGTTTGTGGTGCTTGAGGTTGAAACAACATGGGGGTCCTAGAAA TAGAGTCTGACATGATTATTGACGTTGTAATGTATAGCTAGAGGTAGTACTAGTAGAGTGTATGTACACA CGTGTATAGCGCATTTCATTGCAACTTGTCTGCATGAAATATCATGCGTGTACATCCGTTTCACAAAATC CTGAACAATTTTCACACATTGCCAACTTGTCTGACTTTCCCCTTCTTTCCTGCTGATATTCAGGCACACA CTGCTTTGCTTGATGTTTGTTTTCCAAATAGATGCCACGTTTTTTGAACTATTCAAACTCCTTAATTCGT TCTTTAGCAGGCTGATTAAGAGCCCGTTTCACTTCTTCAATATCTTTGTGCATGACCGTCTTGATAATTT TGTGTGGAACAGTTGGAATTTTGTTGGTTCACAAAATGGACACTTCCGTTTTGGATATGAATTCTAATGT GAGGATGCCGCAGATGTTGGAAAGTCATCTTTTGCTGAATCTTCCCTGTCGTTGCTTGTTTGCCTTTCTC CTCCAAAGTAGAAAGGCATCTTTCCATGACTTGACCGTGACGTCTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds