Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_781792.5 PREDICTED: Strongylocentrotus purpuratus rhotekin (LOC581809), transcript variant X1, mRNA GACGAAAAATCAAAAGCTCATAAATAAATCTAAAAACAATCATGGCTGCTTTCCAGCGGCAATTTCAAGC TGTTAGGAGATCTTTCAGACGGAAAAAGCGTGATTACGACGTTGTGTTTGAATGTACACCCGTCGTCAAG CGGCAGAAGATTGGCAATTTCAGACCTGAAATATCAGAAGAGCTTGCCTCTATGGACGTGAGATCCAGCA TAGCTCAAGATGGATCACGTTGGGATATCATCGAGGACCTGGATCTCTTCTACTTCAGACAGCTTGCTGT CAGTCTACAGGACTATGACATGCAACAGAAGATCGACCTTGAGATCAAGATGAGAGAGGGCACGCGGAAG CTCCTCGTGGCTTGCAAGAGGGAAGCCCAGAGCCTGGAAGCAGCGAAAAACCTGCTCACATCTAACGTGC GCGTCCTCTCATACATGTCAGAGCTCCAGCGACGCAAGACGGCAGAGTTTGCGGATCGGGCGGCGTCGCG GAAGATCAAGAGCGCCGGCAGTGATTCGGGCGTAGAAGCAGAAGCAGGAGGGGACGTGATTGAGCCATGT AGAGCTACAGTGTGCGTCTCAGATTTACGAATTCCCCTCATGTGGAGAGGCGTGGACCATATAAAGAACA AAGGAGATCATCACAGGTATGCAGTCTTCTGCCTGCTGAAGATAGACACCCAAATTTATGCCACTCAACT GGTTTCTAATATAGACAGGACAGCAACAGATGTCAACTTCAAAGATGTCATTGTCTTTGACAACGTGAAG CCAGATTTCACCTGTATCCTAGAAGTCTATTCATACAACCTTCATAACGACATGACGATAGCAAGCACAC CACAGAAGATCAGACGCAAGTTGAGCGCCCTCTCTGCGTCAGTGGGTCGGCGCGGCAGTCTAGGGCACAA AACACAGGTCAACTCAACCAGTGGGTCCACTGAAGAGGAGCAGAATGAAGGGCCTAGGTACAGCTTAGTA GCCAGAGCTAGACTGAGGTTACAGCAAGTTAGTGATCAAGTTCAGACATTTGATCTCAACACAGAGAACG ATGATAACACAGCACATCAGCTCCAGTTGTTTGGTAATATCTGTTGTCGTCTGGCTGCTCAACCACTGTG CACGGTAGAGGAGAGCATGTCGGGGTACCTTTCCAGTCAGGATGAGTTCCAAGGTAAACCAGTATCAAAC AGACTTTGGTGTAGATTACAAGGCTCTCATCTAATTTGCTGGGATGATCCTACAGAAGGAAATCTAGGTG AACCATCCATGACTCTACAACTCAGAAAGAACTCTTCAGCGGTCCGATCAACGTGCTGCACAGACCCACT GTCGTTTGTGATCGGCGGTTGCGGTGACGATCCTGACAGAAAACGTCCATTCACGGCAGAATCAGAAGAG GAACTGGAAATGTGGCTGAAAGGGTTTGAGCAGCAATTAATCAACATTGAAACTTGGTCGGATTGTTGTC ACCAGAAGATGAAGATCTACTCCCCCTTCCCTGGCAGATCTGATCTGGTGCTAGCAGAGAGAAAGGGCTC CCTCTATGATGAATGTTCTTTAGTATCGCCAGAGAGAGAAGAGTTCAATGATGAGAATGTCTTCCAAGGA CCTCCGTCAGACAACCTGCGCAGTCGACGAAAGATGAGATCGCAGAGCATGGCAGCGGCACCCAGCACAT CGTCATCCTCATCAACGTCGTCCTTATCATCCTCTCCCCTGCTTCCTTGGAAGAGACCGGTGGTCTTACC TGCAGCAGAATCATCCCCCTCGTCATCGTCCCCCTCGACATCGTCAGCGATATCATCATCAACTCAGTCA CCACCTCTCTTCCCATTCGATAAGACCGTCCTTCAGAAAGAAACAACAGTATGAGTTATTCCAGTTATTA CAAAAGAAGTAAACCTCATTGGGTGTCACTGTGTGAATAAGACAGTTCCTAGGTAGCACACGGTACAAAT CACCCCATACATGTTTATCAACAGGACGTGTTTCACAAAGACTAAAAGTTGGACTTAACTATGGCGGGCC ATTCATGCCACTGGTTGCTCTCACCCTTGGTCTCTCAAGGGACATCACAAATCTACTGAATTCACATTTT TTGATAATTTATTGTTGAAGGAAAAAACAGTATCTATAGATCATAATTTCTAAGGTTTTTTTCCACTAAT TTTACATCTGGTTCAAGACTTTTTAAGGGCATAAATCGCCTGCCATAGTTCAAGTCCAACTTAGGTCGAT CTTAGTCTTTGTAAAACACCCCCTGACCTCTCACACATAGAGATGTCCCACTTTGTGCATTTTAGAATAA ACCACAACCAAAGTGATGAAGGTGCTTCATAAATACCTTATGTTTGCCCTATCCTCTCCTTACCTCTCCT CTCCTTTTCTGATCAATATATTCCAAAAGATTTTCAGAACCTACAGCTACATATATCATTATTATGTAGT CATACAAATGTACTCAGCAATAAGTAACTTACAACACACTAAAATCTTTGAATATTTGAAGAATCATTCA CTTTTATATTCTCTTCTAGCACACTTTGAGATCAAAATTTTGTAGAAAGATTTTCATATATATTTATTTT TGAAATCATAGACACTGTATATTAATGGCATATATTATTTATGAGTTTATCTAGATCATGAGTTATCTTT ATTCGATGATAATTTATCTTCATTTTATGATTGTTTTATATCTTCTTTTTCCCTGTATGACGCTTACATA TACTATCAACTTTTCTGTTTGTCCTTATCTATTTCGTACCGTAATTTTGTATCGTTGGTTTTCTTACATC ATTTCTTTCTAAAAATGTATGAAATATTTATTTGTTAGTAATTTTTCTGCCGAGAGGCAAAAGGGATTAA CTCATATCATTTGACATAGAGTTGATGCTCTCCTCTCTCTCTCTCTCTCTCTCAACAATTTTCTTTCTCT CTCTTTTCATAATCAAATCTTCCTTTTGTTCCATTGTAAGCTTGATGCCAGTCATGCAGCGATCTTCCAG TCAATTCCAAAAGACAGTTTGTTACTTTAGTGAAAATATGCCATTGTAGAAAAATAAACAACATGAATAA GGATAACATTCCTTATTCAACCTATCACATTATTTTTATACTGGGCCTTGTAACATGAACATAATCAACT GCAAATCAATTGAATCAGTATTATCTGTGTGATTAAACATATATCAGTGTAACACTTTGTTACCATGTAT GCACTTCATTTTACAAATTGTAATTTGAAGTAAAAGTAAAAAGAATGTAGTCAAATAAGAGCTTCTGATC AAAAATATGTTTTTTTTTTAATGTCACAGCAGTTAATGATAATTTTACCGCTACATTCCTTTAAATTGTA CAAAAGAAATGTTGTCTTTTTTTTTAGGGAAGCTAAAGTGATATTAAAAGGTGATCCCATTCCATACATC ATTGTTCAATGTAAAGCAAGAAAGATATAATATGTATATTCATGATTATAGAAAAAGAATTGATATTTGA GTTGAATGTCAGACATGTACCTCCTTGTATATTGCACCCCCTCCCCTTTGGCTTTCCGTAAATTCAGATG TACTTACAAAATGCAAACATTTTGCTGCTTTCATATTCGTTTTCATTCCATATTCCATTTGATTTCTTCC AAATTCAGTTTGTATTTGCCTCAGCATCATTTTTTTCCAGCTATCTGGCTTCCATGAATGTTTATTGTTT TATAAATTGTTCATTCCCATCATATCTCATTAGGTTTATTCTATAATTTTTGTTATTACTATCTTACTAT TACCATTCATGCAGCTCTGAAACCCAATGCCATATTCTTCAGAGAGTATTCTGAAGGTTCGTTCAGATAT GATGCAGTAAACCACCGCAAAACAGCTGCCACATTTTTTAAACGTGTTAATGAATGGCAACTGCCTGGGT GCAACAAAGTTCCTGGGCATATTCACTGAGCTCTGTGTTGTAAGATACAGAAATGTGATGCCTATTGCAC TTCGCGTCATTAAAATCCGCTGTGGTTTTGCCACATATCTGAACGTGGCTTAAAGCCCCTCTGCACTAGT TTGGCTAGGAGGGACTAGACCTCCCTGCATGGTCACTGACAGGTGGTTATCTCATCAAATCAGCTCTCAA TTAACATAAGAAAAAGGGGACCATGGGGAATCAATGATCACTGATTAGGCATTGTTTGCTTTATAGAGGG CGCAGGTAGCTATAAGTAATGCCGTGGGGCTTTAAGTGTAATTTATTTGGTTGGAATATGCAGAGTAACA TGTATAGAAGATATGTACAGTACCGTATATGGATTTGAAATAGAAACTGAAATAGAAAAATCATGACAAG GATTTTTGTTCACAGGATACTCACTAGAAGAGTTTTTCCATTTTCCTTGTTTTTGTTCTGTTTATACCAG GGTTATTGAATGATTTGCAGGGTTCTGATGTGCTACTTTCAGATCATTTTTTGCACCACAGCATTTTGAA GAAGTGTGCTTGTGTTTAGAATAAGATAAATATTAAAAGTATTACACAGTAATAAGAAGACAAATGTCTT TTGTTATCCAGAACAAATTACAGCAATATTAGAAGTTTAGAAGTTCTACTTCTTTCGGGGATATGTTTTG CTGAGACTAGACCCTATGTGCGACTTCATCATTCCCTCTCTTGTCTTCAAGCAAGTCAAAAGTCAGAAGA TTTTTTTTTTTTTTTTTTAATTTTCCAAGCAAATTAATTTTTCTGTCTATCATTCATGAGAGTGAAACCT GGTTCTAAGGAAATTGTTTTAACAAAGCCTCATTTTTGCAAAATCATGTTGCTGATCCCAGTTCTTTGTT GAGGCCTGCTATATCAATATTTCAATGAAAGAGAAACATTTTCTTGGGCCAAATGGTCTTTTGTTTAAAG AGGTTCCACTGTATTTCATTAGACATCCTTTCTTTTTTTTAATCAACTTCTATCGTATTGGTTTGTATGA TGTCTGCATTCTCAACATTTTCTCTTTTGTATAATTATGTCATTGAATATTAAGAATTGTATGAAAAGCA TTAATTAATATGGCATGCATTCCAGAAATCAGAAGTTGAGCATGCACATTTACTCAGCTTTTATTTTATG CTTCTCGCAATCAATGTCAGCATTATGATGAAAATTCACTTTGCCATTCCTTAAAGGGACTTTGTAACAT TGTTCAGATGAGAGATAGTGGTGCTAAGGTAGTGACTTCAATGCTAGATGTACAATTAAAGATAATCTGA AAATTTGAGT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds