Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030992386.1 PREDICTED: Strongylocentrotus purpuratus LIM domain kinase 1 (LOC587817), transcript variant X1, mRNA CAACCCGACTCGCGAGATGCGATCCACCATAATCGGCGTTTTATTGTTTAGCTTGCGATCGACAGCTAGT GCACCGCATTCTGTGAGATGCTTTTAACTTGCAAATCTTCCCTGATTTTCTTCTGATCCAAGATGACTTC AAAACATGACATCCCAGATGCTGGGCCCATCTGCGCCTTGTGCTGCAAGAAAATCACTGATGCAGAGTAT GTGCAGGCGTTACAAAGAGACTGGCATTCATTATGCTTCACTTGCAGCCAGTGCAAGCAGCGGCTATCGT CCTGGTACTTTGAGAGGGATAAGAAGCTCTACTGTCAGAAGGATTATTGGGCCCAGTTTGGAGAGTCTTG TCAGGGATGTGCTCAACTCATCGCTGGACCAGTTATGGTGGCTGGTGAGCACAAGTTCCATCCGGACTGC TTTGTATGCTCTAAATGCCAAGCCTACATTGGAGATGGAGACAGCTATGCCCTGGTGGAAAGATCTAAAC TATACTGTGGCCCATGCTACAAGAAGGTTGTTGTCCTACAGACGGAGAAGAGTAGTCCTAAGAAGAAGAA GAAGAAGCAAGCACACACCGTTCAGCTGATTAACATACCACCAACACCAGAGGGACAGAAGAGGTTCTCT CTGTCGCTGGAAGAGAAACAGGCCAAGGAATCAAGCTCCAGTGAAGATGTACCGGTAGCTGCTCAGGGCA AGAGCATCTGTATATCAGATTTGGAGACTACACCTGAGACGGTATCTCTTCAAGTAGGAGATAGGATTCT GGAGGTTAACGGTACACCTGTCACTGATCATAACATATCAGAGATTGACAGAATACTGAGTCAAAGGACA TCCCAGCTTCGCATCACCGTAGAACACGGCCCATCTTCCAACCCCGTCCCCGACGTCTGCGGGATCTTCA GTAGTCGGTCCAGCAGCGAAGAGAGCAACTCCCCATCCTCCTCCAACGAGCCGGAGTTTCCTTCAATCAA CAACAACGTTCAAGCATCACTCTCCGACTGTTCACCGTCGTCGGGCGAGAGAGGGCGTCTTGGTGTGTTC AACTACGAGAGGAGACATATGAAGCTAGATAGGCATGGCTCAGCTCCCAAAGTACGCAATAACTATCCTG TAATGTGCAGTCCTACCTCACCGTTGTCCAGAACTCAGTCATACCGGGTCTCTAAGAACCAGAGGATATT TCGACCTGCAGATCTCATCAAGGGAGAGGTACTGGGTCAAGGCTTTTTTGGAAAAGCAGTCAAGGTAACT CATCGGTATACAGGAGAAGTGATGGTTATCAAGGAGCTGGTAAGATACAGTGATTCTGCACAGAGAGACT TCCTAAAAGAGGTTAAGGTCCTACGGAGTCTGGATCATTACCATGTTCTCAAGTTCATCGGTGTACTCTA CAGAGACAAGAGACTTAACCTAGTAACTGAGTTTGTTGGAGGAGGGACACTAGAGAATATTATCTCTGAT CTTGATAAACCGTTTCCATGGCTGCAAAGAATAAATGCTGCAAGAGACATTGCTTCAGGAATGTCCTACC TTCACTCGATGGGGATAATCCATAGAGATCTCAACTCAAACAACTGCCTTGTCAGGGATGATGGCTCTGT CGTCGTAGCAGATTTTGGTCTTGCCAGGGTATTCATTGATGAGAATGACAGTCGATGTCCAAACTCCTTT GGTCCGGGTAGGGATAAACACAAACCAGCCGGTCGTAAGAAGCGCTATACCATGGTCGGCACAGCATTCT GGATGGCTCCTGAGATGCTGAAAGGTAAAGACTACAATGAGCGTGTAGATGTCTTTTCATTCGGCATTGT CATGTGTGAGTTGATTGGGAGAGTGAGTGCCTGCCCGGATGATTTGCCACGGAGCGGGGACTTTGGACTA GATGAAGTGCCTTTCATGGCGCAATGTTGTGATACCTGTCCCAAGACATTCCATCAGATCATGCTCATGT GCGTCAGGATGGACTCTGATGAAAGGCCTTCGTTCGATGAACTGGACCAGAGATTGTCCTCCTTTTCTCT TCACTTTGAGAGACTTTCACCCCGTGCCAAAGACCTGGAGAGTTATCATATATCACCCACTGAAGATCCA CCACCTAAAACCTGAACGAGCACCCAGCCCAGGCATGAGAAGGGAACGGTTACCAGTCTGGAATCAAAAA CTCGAAAGGACAAGAATGATAAATCCCTGTATACAGGTGGATGACATTTAAACAAGTTCCCTGATCATTG TTTATCATCCGGCCTTTTCTTGCTGCTGCTGCTGCCTTCTAATATGAATATAGTCATTTTCTTCTATACT TCCAATATCTGCAAGAAGGGGCACGGTGTATACAATTTCATTTTATTTATTTCATTTATCGTACCCTGTA AACATACCCTGTATCATTGCTGCATTATCAAATGATATGTATGCATGTGGACAGTGCCATAGGTGGAAAG CACCGTAGTCACAAGAAAGATTTCTTCTGAATTTTTTTTTCATCTTCAATATATTAGAAAATGTTGTCAG AGTAGGATGAAATATGTAAGATTTAAGGATTAATTGTTCTTAAAAAGGGTCTTTCCGCTCATGGTATGAG AAAAATATACATAAATTCCAGTATTTGGTGCATAATCTTAGTAATGAACAGGGTTATTATTAGAGATTAA TGTAGGTTATTTATTTTTATACCATTATTGTACAAATATGTATGCTAAGATTTTTACAGAAAATGTTGTT TTAAGCTTTTCTACAAACACTCATGTGGTTTAAGATTAATTAATCATCTTGAACACCCAAGTACTACTTC CAACTCGATTGGAAATCAGTGGAATTATCAATGTTTACTAAATTATATTTGTGGGTTCTTTATCCACCTA ATAACTTGAACGATTTAATAATACATTTTATTTGTTTGAAAAATAAATATTTGTTCTTCTTTCTTATTTG TCTTCTGAGCAAATCTTTAATATAAATGAATCATATGTCATTTCAAAATGAAATGATGCAATTTGTCAGT AGTTTGCAGGACTCCTTGCCTGCTGTACTGGAGAATTTATTGGATCTAGCTATTTTCGTCAAGCGTTCAG CAAAAAAATTGTTTGAAAATTTTGAGGGAAGTGTATAGAGAAGACAAATATGAAATTGTTGAAGTTTTAT TCATGGAGTATGATATAGTAAGCCCAATTTCAGAATTGCTGTTGCAGTGTCAAGTTATCACATTCCTCAA TCTGTCAATGATTAACAGTAATACGTCAATTGTTTATTTGTTGTTTCCTTTAAAATATGAAAATGTGGCC TACCTATAAACCACTGTTACTTGCCAAATTAGTAGAATCAATTTGTAAGAATTTTGAAGCAATATCAAAA CTGAAATCTGAATACCAACATATTGATATTCAAAAGAAATGGCCAGCTTCTTCTCATTTAACGTCAATGA ATGCTCGCCTCGTGTGTCATGTATTTGCCAAATTTTTACAGCTCTCTTTTGAACTATATGGATCTGCATT TTCAGATGATGTTTACTGTATAAGCTTTTTAAAGGCAATAATTTGTACCAACATTTTTTGTTGGAACTCT TAACTGTTAAAGAGATGTGATATGCACTTGTTTCCAAAGGGCCAAATTTTGCCAAATTTTAACACAAATG TTTGTCTTTTCAAGGGCTTTTATTTGGGTTCTTTCAAAGACGTGTGCATGCATCATCAAAACAGCTGAAT TTTTATAGATTTTTTCTCTTTATTTATTGTGCAATGTTGAAAAAGAGATTTGGATATACTTTCTAATAAT GTAGTCTTTCAGTGTTAATGAGAAATTTCTATTTAGATTATAGATTATTAAATCTTCATTTCATATACTA TATTTGCCAGATATCGTAATGCTTTCATAGAATAAACATATTATAGTGTTTGTGGTTGTCTGAAAATAAT TAATGTACGTTTAGGTTCTGCTTTTTTCACCAAGGAATTTGTTTTTTACGACATTGAATAAAAGCTTGAA AGTTTTGTCAAATGTCTGTAAACCTGTTATTAGATCAGGAACAATAACCCTTCAACTCAAAATGCTTATT TATATCTTGTCAAGTGTCAAAAAATCTCTTACTAGTTTTGCCAAAATTAAGTTTATAGTTTGTACCGGTA GTTGTACTGAGCAAACTGTTACTTTTATGATTGATAAAAAAAAATGATTTGTATCAAAAAGAAAAAAAAA GCATTTGTTGGTTTTGCAAGTGGTGGCAAAAATTATATTTTAACACTAAATAATTGGGATTCGTGAAATT CACATGCTGCTTAAATGACCATTGTAATGTTAACTGATTTGTAAGTTTCACGCTGAGATAGTTACTGGTT TTACAATATGCCCGTCATCATAACTCAAACTTGTTCTTTGTCCATGGTCCATATCGTGTCTAATCAACGT AGAGTCTGTTCAGCCTACCGTATCGCATGTTCTAGTATGCTTTATTGAAGGGAAAGACCAATAATACAGA TTAAATGGAAGAAAGTGTGGCAATAAGAAGAGTGAAGGAAAGGTGGATATAACATCATCTCCATTTTTTG ATGAATTACATAAGCATTGAAAATGTGCATGTGCCTGCATGATAGGGATGATTGGATGCAATCACTTTTT AATTTTTTAAATATTTTTTTCATGGATATGAACTTCTCAAGCACAGACCTTGCCTCTCTGTTTTTCATAC ATTCCCTTAATGTATTTCTCTCTCTTTCTCATTGTCTATTAGTTCTTTCCTTTAAATTTCTCATATTTTG AGGCTAAAGATAATAGCCTGATCAGTGTTCAGTTACTTTCGTTCAAACTTCACGTTTGGATTTTGTAAGC ATTTAAAAATTGCACTTGCACGTACATACATGTATGCAGACAGCGTACACCAATATTTGCTATGATCAAT CGTTTCCACAGTTACTTTCACAGTGCAATCGCATGACCAGAATCTTTGACAATTCAAATTATCCATACAC GTGTACAAGGGAAAAACAGAAAATTGGTATTGCAGGCCGTACTACAGAATAGTGTTTATAGTAATACTTG AATTTTATTCCAGAATTTTTTATTTTGTGTTGTTTGTCATTATGTAAACACATTTTAATAAATTTGAATC TTTTATGAGGTAAAATATTGCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds