Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030996414.1 PREDICTED: Strongylocentrotus purpuratus F-BAR domain only protein 2 (LOC100893850), transcript variant X5, mRNA CTATGAGCATTGTGAAGCAGCACACTTTATTTCTGGTTGTCCTCAGAAGGCCTCGTTCGTTCGAGGTTCT TGCGAGCTGTTGAGTTCAGTTAATGTCATCTCTCTGACTCAGTGCCATAGAAGCGTGGAGAGGGAAAACA AAGTTTGTGATTCACTTTTGGTCAGTGATCCAATTTCAGGTTGAGCGAATTCTCATGATTTTTCCCTTCA GTTGGACTGAGTACAACTTTCGGAAGATCTCATCGATAAATTCTGCCAGATGAAGATGATTGTGAACTTG GTTAAAGGTGTTCTCTTTTAAGACTCTTGCATCTCTACCCGTGGCTGTGCTTAAAAAACTGTTTGTAGAG CTTCTCGCGATCAGCTATTCAAGGAATGGATGAATTTTAGATTATCGTTCAAAATTCATGGGAACTTGGT GGCATTTGCAAAAGGAACTATTGACATAGCGTCTTAGAATTTCCCTCTCGTGTGTAGGGATTAATTTTTT GTTGAAAAGTTGAAGAGGCCTTTAGGGTAGTTTTCGTATTCTCATCGCATGTCTAAGTAAAACTTAGCGT TAGAATCATGGTTCGGACAACCGCCAAAGCTCAAAATGCGGCTTTACGTCACTCGAGGATCAACTTGTTT GGAAGCGCAAAGGACTTGCACAAACTCCAGGCTTTGCAGGGGGAGAAGAACCAGGGCTTTGGATGTTTGT ATAATAACATGAAACATGGTCAAACATCGACCAAGGAACTTGGTGAATTCTTCAAGGAAAGGTCTCTGAT CGAGGATACCTACCACAAGAGCGTCAGCAAATTGGCCAAGTCCACCAGTAATTGTTCGCAGCTCGGAACA TTTGCTCCCTTCTGGACGGTGCTCAAGGCTGCCACTGACAAACTTGCCGCCTCACATCAGAAACTTGTTC AGAAACTCCAGGATATCGTCAAAGATATACAGAAATATGGCGACGAGCAGCACAAGAAACACAAGACTGT CAAGATTGAAGTTCAAGGCACAGCTGATACGGTCACAAATATTCAAAGGACAACAGACCTTGTTGCCACG GCCAAGGAACTTTACAACACAAGATGCATCGAGTTTGAGAAGTTAAAGAGGGAAGGCATCACTGGAAAGG AGCTGGAGAAAGCAGAAACCAAGTATAAGAAAACATTGGAGGAGTATAAGAACCTGATTGACAAGTATGG CAACCTGAGAGAAGACTTCCAGAAGAAGATGACAGATACATGTCAGAAATTTGAAGCTTTAGAAGAAGCG CACTTACAGCAGCTCAAAGACTTCATTAAGCAGTACAACATCGCCATCAAGGATTGCCATAACAGTGTAC AAAAGGTGCAGCGAGAGTTCACAGAGCAATGTGAAGAGCTAACAGAAGTCAAACTCATCTCAATGTTCTC AGAGTCTAAGGGTACCGGCAAGGAACGACCTGTATTATTAGAGTTTGAGGAATGTGATGTATCCAACATA CCCATGCCAGACCCAGAGACAACAAAGAAGAAGAAAAAAGTCAAGAAAGCAAAGAAAAAGAAAGATAAAG ATGGAGAATCGCCAGGGAACTCGCCAGATATGCAACAGAGTAGCAACTCTTCCGATCGCTCTGGCAGCAT CGGCAATGCCTCCCTAGGATCTTTTAAAGATTGCGTGTCAGTGAAAGCGACAAACAACTCTAAAACTACC AGCACCACCACTGTTGCCACCACTACCACAACCGCTAACAACACTACAACTACTCCCACCTCCCCCACCA CCTCTACATCAACTCCCACCACACTAGCCCCGCCCACGACCACGCCCACAACCACATCGCCGGGGCAACC GTCTCAAGCACCCTCCTCCAGCCCCAGTGTGTATTCTATGGGATCGTTTCGGGATCTATCGGTGAGCACT CCACAAGTGGATGAGGAAGGATTCAGCATCAAACCTGAGGACAATCGAGTTGAGCATCAGCAGCCGCATC ATCATCATTTCTATTCTGACTCTGACAAGTCCGACTCCGATTCAGAAAGTGAGGATCGAACGAGACGGAT ACGGGTGGAAATCAAGCCACGGGATGCCAACCTCCCCAAGACGACAGCTACGGTAGATGAAATCAAGAAG TCACTGGGTGGCCTAACGTTATCCCCTGCACAGCGGAGAGAAAAAACAAACGGTGATCTACAATCCAGAA GACAAACGGCATTAAACAGAAGCAGCAACCAATCCAATTCTGCTGGGAACCTCTTAGACCTGGACCTGGA CTTCTCCAGTCCTCCACGGAACCACACCAGCAATGCCACAACACCAGACAGCGCCTTGAGTCCTGACCTT TTTAGCAGCAGTTTCGGTGGAGACTCCTTCGCGAGTCCCAGCCCCCAGACCCCGGTCGCCTCCTCGGCGG GCGAAGCTACAGCACGCCCTCACTCGGCATGCATTTTCAGATATTCTCGTGAATATGTACGCCGACCGCG ATCGCATACGTCAAATCTGCTTCAGAGTCCCACCACGCTGAGTGACTCTCTGCCACCTGCCCTACCGGCC AAGCAGAGGCACAGTGTAGGAAGCACGTTTGCAGCGGCCGCAGCAGCAGCAGGCTCGCAGATCCCAAACA TCCCAGCCAGACCCCCGTCAAGACCTCGCAGCAGCGGGATGCAGTCGCCTACCCACAGCAGTGGTGACAA CCCCGGCCTGCCCAGACAAGATAGCAACTCCTCCCTCTCTGGGCTCTCCCCCTTCAACACCCATGGGGTC GTAGGGGGCTCCAGGGGGCCTAGCCCCCTCACACTGGGGATGAATGATACTATACCTATAGCAGCCGCCT TCACTGAGTCTGTCAATGCTTACTTCAAAGGCAACGAGCAATCCAAATGTATGGTGAAGATCACGGGCGA CCTGATGCTGTCCTTCCCAGCAGGCATCATTCAAGCGCTGACCTGTAACCCCCAACCTGCCATGCTTGCC TTCAAAGTCAAGAACACACATCGTTTAGACGTTCTGCCAAACAAACAACTCATTTCAGTTGACGCTACCC AGACGACGAGTGAGAGCACTGCTTACATCTTCAACATGTCTAACCTTGTAACGTTATTACGACGCCAAGT AGAAAAGAATGCTGCAGCATCGTACTTCAATGTAGACATCCTCAAATACCAAGTGAAAGCGGACTCGGAG GGCAAGTCGACGCCCCTGCACCTCTGTAGCTACTGGAAGTGCGACTCCACCACCACAGACCTGAGAGTGG ACTACGCATACAACGCGGGCTCTATGGACAAGGCTAAGTCTCTTACCAATGTATCGCTGATAGTACCGGT CGATGGAGGGGTAACGGTCATGCATTCTAAGCCAGCAGCTACGTGGTCATCTGAAAGCAAGAGAGTTTTA TGGAAGATAGGAGAGATCCCTCCGGGTGGGGAACCAGGCTCGTTACGAGCAAAGTTTGAGCTCGCAGAGG GCCCCAGCAAACCAGCCACGTTAGCAGTACAGTTCAGCGGGGAGGGCGCCACACTGTCAGGCGTCGATAT CGAACTCCTCAACACCTTCTATAGATTGTCGTTAGTCAAGAAAAGATTTGGTACAGGAAAGTATTTGTCG GAAAGCTAACGGTTGATGAAGCAGAAATCGTCATGCTGGGTACTTTTATGGAATCGGAGCTGAGCTGCAA AACTACCTGATCATCCATTAGATCATCCTACCATCATCCAAGACACACTCGCCAACTCACAGTCAATACA TCAATTCACTGGCCAAGCCGCTGCCGATTTGACGTTAAACCTTTCTGGCTTGCATAAGCCGTTTCCATAA AGTCCATCATTATTTCAAATCCGATTCAGCCAGGGATTGCGAGAACATCAAATGATCAATTTTCAGAATT GAATGTAAACTATCCAAAGTAACGCAATTCACTTTAATTGTAAATTTGATTGTAGATCTTATGTTACATG GGCTAGAATAGTTTGGATACAAAACAGTGATATGCAAGCAAACGGTATGGATACAGTGCATGATGTTGTG ACAGGTGTACCTTAAACAAGCTTAACTAGATGCTAGGAATACAGCCTAGAGTTCTCAGTGTGTCCATGAA ATGTATTTGACATTGTGAATACAGCGGTTAGCTGATGATTTGCTCGAAATACATCTATTGTAAAGTTCTA TTTGAAGTGAAATACATCAAAATATGAACTGTATTAGAAATATGATAGGTACTCTTGATTTTTTTAAACT GAATGTGCAAATATGTATCATACAAGAGTGATTAAAACATTATGTACAGCATTTATCTATGAATTGAATG AAGTGTCTCAAATTGGATATTCATTAATCCATCTGTATGCTATTATGTCATTGACCAAAATGTCGCATTG AAGAATTGTACAAATTAATGCAGATTTCTAGAATTTACAAAACATTTATGCCTTCAGCTGCTAAAAGCAA AGCTTTGTAATGTACCTGAGATAAATTTTGCTATTTTTAGTTGAATTCTTATGCCTCTAGAATGATATTT ACATTGTTACTATTTTGTGTTCATTTTTTGATTTATGTCACTCTTTCAGAATGTTTTGATATATCATATA TGCACTCTTAATGTTTACCTGCTTTTGTTTTCAGGTATCTTTTTAAAAATTATTTATATATATATATATA TAAAGTGTATATGGAGAGAGAGAGGGAGAGCAAGAGCAAATCAATTGTACCGTAATCAAAGACAACTTAG GGGAGATAAGATCGTTGAATACCCAGTTGAATCTTGTAAATTCTTTATTTCTAGATTATTTATTGGAAAA GTCGCAGTTGGATAAATTTGATTGGGGGTGGGGACTAGTTAATATCTTTGTTCAAACTACTAATTCTGGT ACTGATTTGTGCATAGTTTTTGAGGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds