Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT098009.1 TSA: Strongylocentrotus purpuratus WHL22.27664.3 mRNA sequence TGGGAGGGCTGACGAGGAGACACAAACAGATATCCAGCTAAATGGACTTGGCATCATGCCTAGACATTGT ACTATTGATGTAGAGAATGACATCGATGTCTATATCTCACCTTGTGAAAATGCAAAGGTTTATGTCAATG GAAGTGCTGTAACAAGCAAGACATCGTTGAGGCATGGAGACAGGATACTTCTAGGCAACTACCATTTCTT CAGGATAAACTGTCCAAGAGCTCCTGGAGTTGGATCAAGTGGAACAACAACCCCTGAGCCTGTGGCCCAG CCAGTGACAGAAAGCTTTGACTTTGATTATGCACAGAATGAAGTCATGATGCAAGAACTACACAATGACC CTGTACAAGCTGCCATGAAGCTCATAGAAGTCCAGCACCAGAAGGACAAAGATGGCGCCCTTTTCAAGCA GCGGGAGGCTTACGAGCAGGAGCTGGCAGCACTGAAGCAACAGCTGATTCCCAAGAACTCATCAGGTCAC CACCAACCCAACAGCAGACCGGAGGACAGGAGGATAGAAGATGAAGGAACCCAGAGCCAGAGTGGGGATG GGTCGTCGTTAGGGATAGGGTCGTCGCTAGGGGTGGAGCCTTACGAGGAGTGGAGCGAAGACAGGGATGA TATGTTCAGACAGAGTCTCGCCAAGCTGAGAGAAGACGTTGTCAAGGCAAACGCCCTGATCAGAGAGGCC AACTTCCTGGGGGAGGAAATGGGCAAACAGACAGAGTTCAGAGTCACACTACAGATACCTGTCTGTAACC TTACTCCAAATAGAAAGAGAGGCGCCATAGTGAGTGAACCGGCCATTCAGGTGAAGCGTAAGGACAGGGG GACGCAGATCTGGTCTGTGGAGAAGCTAGAGAATAAGATCATTGATATGCGTGACATGTACAACGATAGG AAAGACGAAGGAATTCCTCTAAAGGATGAGGATCCATTCTACGAATCCCAAGAAAATCACAGCCTCATCG GGGTTGCTAACGTCTTCCTAGAAGTATTATTCCATGATGTAAAACTCAACTATGGTGTACCAATCATCAG CCAGCAAGGAGAGGTTGCTGGGAAACTTAACATAGAGATCCAGAGGATAAGCGGGTCTATACCAGATGTG AATGCCGACCAGGAGTCCACCACCTCCAACGGTAGTTCAGGGGGGTCAGAAGAACCGGAAGAACCGGACC CTGAGGGTAGTCTAGCGGTAGGAGCACCTCTCACATGCAGGTTAAAAATCAAAGAAGCGTACGATCTACC CCTGAGTCTAGCACATTTTGTCTTCTGCCAGTATACCTTTTTTGCTAAGGATGGTCCTACTGTAGTCCCA CCCTATATCAATCCTGATGTGGATGATGAGCCTGGAAGGGGACCAGAAGCTATGAAGGGAGTCATGAAGT TCAACCATACCAAGGAATTCACAGTGAACGTGACGGAGGAGTTCATAGAGCACGCCCTCGAGGGGTCACT AGCCGTCGAGGTCTGGGGTCATAGGGTTGGCAACCACGGCCTCGTTTCCAAACCTGGCTGGGAGATCGAC AGCCTGCATTCCAAGTCCAGATCGCTGGCCGATCGACCAGTGGCGGAGTATGAAAGTTTTGGATGGACTG AACTGATCAGGAAGATAGAGCTCTGGGTTGAGATACATGAGTTGAATGAGCAAGGGGAGTATGTACCTGT TGAGTGTCATACCAAGCCTGAGGTTCTTACTGGAGGCATCTTCCAAATCAGACAGGGTCACTCTCGTAGG ATACTGGTAAGGGTCAAACCTGTCCAGAACTCTGGGACGTTACCAATCATCTGTGAAGCCATCACGTCTA TCTCTGTGGGTAGCATCTGCGCTCGCTCCAAACTGCAGAAGGGTCTAGATAGTTACCAAGACGACGACCT GACCCGTCTGAGGGAGAGATGGTCGGATGCACTGATGAGGAGGAGAGAGTACCTGGATGAACAGATTCAT AAGATCATGCATAAACCAGGGAGAACGCAGAAGGATAATGAAAGAGAAGCAAGCCTTATCAACCAGTGGG TCTCACTCACAGAGGAGAGGAACGCCGTCTTGGTCCCCGCCCCTGAGAGTGGGGTACCGGGGGCACCTGC CAACTGGGCCCCTCCCCCAGGCATGGAGACACATAAACCAGTACTATTTCTTGATATTGAAACTGATGAG ATGGGTACATCAGGTTTATTAGAAGGAATCCATGCGGCTGGTTTCAACTCCATTCTACCGAAGGAACTAG GTACCAAGATGGTCAATCTACCCATTATCAAGTACTATGAGAAAGATGTGTGTGCCTGTGCGTCCTGGGA TTCTTCCCTCCACGACTCACCGTACCTCAACCGCAACACCAACCCAAACGAGCGCATCTATCTCATCGTC AAGGCGGTGGTGCAACTCAGTCACCCGGCAACCATGGAACTGGTCGTTAGAAAACGCATCTGTGTCAACA TCTACAAGAAGCAGGGCTTTGCAACGGCATTCAGGAGAAGGCTTGGCAAAGGGGACACTGTCCATTCTTG CGGTGTGACGTACGAGATTGTATCAAACATTCCAAAGGCATCAGAAGATCCTGAAGACCGGGAATCCTTA GCATTGATGGCCGCAGCCGGGGCGGAAGAGAACGGCAGTACCGGGGACGGAGAGACCTACATCGAGAAGT ACACACGAGGCGTCTCGGCTGTAGAGAGTATCCTAGCACTCGATAGGTTACGACAGGAGGTCATTATCAA GGAGAAGTTGGCCAGTAGGGGGCGCAATTTGAGGAAGACGTCCAGTGTACCAAACATACCTGGCTCCATT TCACGCAACCTTGATATGAGTCGATCCATGGACTGCCTCGACGAAGATTTCAGGATACTACGTTGGGAGA GTCTGCGTAACCTAGGGCCGCCCAGCTCCCCGACCCTTTCGGGAGGCGCTGTGAGTCCTGTGGTGTACCC GACCAAGCCCGCATCCCGCCCCCGAACGCTCCAGGTGTCCTCCGACTCCAAATCAGAAACCAGCGACTAC TGCGGCTCCCCCGGTAGCATGCAGTTCAGCTCCAGCCCAGGGGCGAGTCCATCCCACCCCAACATGAGCC ACGCCCATCCAGGGATGACCTCCACGGCGCACCCCTTGATGGGTGGAGTGCACCCCTCTGGGGGTCCCAT ACTACCATCCATGAGCCCTTTGCTCCCGGTCAACCCGAGGAGGTCCAGTACGGGCAAGTCTGGGGGCAAG CAGCTTAGACCGGTCCGAGAGGAGGCACGGGCGGCTAGGTCCGCACCCAAGGTGGAGGCAAGGAGAAGCT TACCCCTATAACACACACTCACCTTACCGTTTTATTGGCAAAAACTCTTTACTATGTTCAGAAGAGACAT CGTGCAATAAGGATGAGTGAAGAAAAGATAAATCGTCGCCGATCTGAGTCGCCCCTATCTTTCACCGATG CCAAATCCACCCCTCCAAAAAGTGATGTCTTCCATAGTGAATTAGCTACAGCACTGAACCAGTCTGCAGG GTCTCATGTTGGTAGGAAGAATCCATTTCTCAATAGGGGAGATGACCCATCTTGTGATGAAAGTGCTACG GATGACCGCTTGGTCTATCTCCCCTCCCAGCAAATGGACCATTCCAGGACTTTGCTGAGAACAAGCAGAA GCTGGGAAGGTCCACTAGTGGCCGTCGGGGATGCAATTGAGGATGAAAATGAAGGGGAGGTGCAGACTGA TTTCTCCTTCCAAACTCCACCCCACGTACCAGGAATAGATTCTTCCACTCCTGTACACTCATCCAGTAGG AGTTGGGAGATACCATCTGATCAAAAGGGGAAGAAGTTATACGGAGGGGGTGACTGCGATGACATGTATC TCACATTCGGAACCTGCAGTCTAGAGGAACCCATTTATGCAAATGAAGTCTGTTATTTAGAAGAGGACCA ACCAATTTTCATCAAGCCAAAATGGGTCTGTCAAGAACAGGAATTTTGATGATGACATTGGAACCAAAAA TAATCTTTTGAAAAACACATCAGTGTTCCATACATTGTGTTTGATGTAATTGCAGTTTACTATCTTCATA TTGCCAAAGGGATTTATGTTAATCGTCTAGTCATTTCGCTTGACTGTCATGCTGGTGTACACTCCTCGTT TAGCATGTATGTCCGTTCAAATTGCATTACAAGTATTTTTTGATTAGATCCAGACTCTAAAAAGATTTTT TTATGGTTGTAGACTATCTAATGATAGGCATAAACCCATTTGATATGTTTATAACTATCTCCTGCCACTA GATTTACTCTCAGACAAAGAGTATTCAAAATTGTCATAAACTTCATAACATTAGATATCACTATAAAAAT ATCTGCAGATTTCACAATGTTTTGCATGTGATCATGATGTATTAAAACAGATAATTTTCAATTTCTTCAT CATCAGCTTCTTCTTCTTTTCTTTTATTTTTTCTTCTTCTTTTCTTCCTCTTATTCTTCTTCTTCTTTCT TTCTTTCTTTCTTTCTTATTTTCTACATTAAAAAAAAATCTTATTTTTGGTTTGTTATCTTTCCGTTGCA AGAACACAAGTGCTTTACATTATTTTGGTTATTGTTCACTCATTTTAATTTTGCATTCTACATGTAGTTC TGTAATTTACAAATTTTACTAGAATATGGAGATTTGTTTGTTCTGTTATGTTTTCTTGTATTTGTCTTTG TTTTTGCCACATATTTGATTATGATTCATATGATTTTCAGTCTTTCTCAATATTTTTTTTTCCAATTATA AGACCATGCAAATGTCCTTTTACATATATATTCCTGATCCATGTCCATTCCCTATTGTGCACTTTGCTAT CCAAAGGTAGAATGCTACATACATTAATGTGATCACAGCTTGTGCTTGACTCTGTGTGTGGAAACACCAT GTATGTAGATAATCATGTTTTCTATTACTCTTAATATTTCATTTAATTTTTCTTCTTCTTCTTCTTTAAT TTTTGTGCTTTATCTATTGCTGTTATTTGAATGAAAGTATGACAAACTTTGTCTGTCTTGCCCAGTTTTT AGGACTGTCTCTGTTATCATGAAACGGATCCATGTTTATGTGTATAAGTGGGCCTGTCAGGAGAAGGGCA TGAAATGCTGTCCTCATCAGCCCGAGTTGGCCAATTAGCTCGCTATTTTGTGATCCGAGAAATTAGCTCG AAGTTACAAATCGTGTCTTCATCAGCTCAAAACTCGAGCTTGAGAAATTTGCTCAGTGTTCGCGCATAGT GTGAGTCTTCAGACCACAGAAAGGCGGGCTATTTTGCAAATTAGTCCAAGGTATCTTGGGAAGATTTCCC GAGCAAATAGCCCGCTATTGTATGATCTGGCTAATTTCCAGGATCAGAAATAGCTGGCTATTTGGCCAAT TCTGACTGCTGAGGACAGGCCTATAGATATGTACACTGTCCAGTCACACAACCAAATTGACTCCAAATCA ACAGATAACTGAAAAAATATCGGCCAGTCAGGGTAATAATTTTTTTGTTTTGTTTAGTTTATTGTTGGTT TGGTGTCAGTCTCGTTGATGTTGCTAGGGTATTACAGTATTTCATCCAACTAAATCTGTATAGTTAATCA TTTCTGTCATGGTTTTAATGTACTTGTCACAAATAATACTGAAATATCAGAGATATTGATTGCCCTATAT CTGCAAGTATTTGTAAGCTTAAAAAATCTGCCCCTTTGAAATATTTCCTATAACTCGCCTGATTTTCAGG GAGGCTCCCTGAATTTTTTTTAAAATTTCTTTGATACGTCACTCCACACAACTTTGAATGCCTCCCCGAT TTTTTGAAAGATTATTCCTATTATGCTGTATGCAATTGATAGAAACCTCCCGGATCTCTAAATGAATCCT CCCTGAAAGCTGTAGTAAAGGCCAGTTGGCATATCTGGGTTATGTGCGTGTATTTTGACAAAGGTAGTCT GACATGTATCCTGTATGACATTTATAAAAGTAGCCACAACGGTGCAATTTCAAACGAGAAAGTTTGGATT CTGACAAATGAAAAGTATGGGTTCTCAAAATACAGACAGCAATCTGTTTTCATCACATTTTCATAATGAT CTATAATCGCTATGCCCTGCCACATGTACTACATGTATATCACATAAAAAATTGAACAACTTGGGTAGCA AAGCTATAATATATTTGCCTAATACCTCCCTTCTTTATATTACACATTTATCTATCTTTAATTAAACTGC CTGTCTGTACTCTGCCATGAGAAAGATTCAATTCAAGTTCTTCCAAACTGTCGACTTAGTCTTACCTATA AAAGTACCCTACTCTGTGTTGTTTGTCACACAATTTCACATTTGATATCTCTAAATCTCGTAGTAAAGAT ATATCTATCATTGTAAATTTCAAAAGGTATTCATTCTTTCAGTAGGGTCAATGTACTTTTATATAGTAGA GAGGTGTGTATAAGGCTCTGGCCTGGAGTATTTCACCATTAAATGGATCATAACTTTTAGAGGTGAACTT TGATACTAGGCAATGTAAACCACAGACGTCTCGACACTTATTCTAGGACAGAGTAAATAGGGCTGCCAAT GAACACACACTCAACCACAGACTTATAAAATCACTTGGACTATAACTGTCTGAATTATTAAATCATTCAT ATTTTGCATTTGACAATGTGGATACTTGTGTTTGAATTTGACAACCTTTGAATTAACAAATACATGTAAA TGCCCCTATGATTGGGCGTATTTTGACGAGACAAATCATTCAAATGTTTTTCTGGTTTCCTATGGCATTA GAGCAATTTTAGATAGGGGTAAAGGCTTCTTATTAATTCAAATCATATTTCATGTTCTCACAGATCATAT CTAAAGTAGGCATAATTATTGTTGTTTTCCGGATATAAATATGTATTAAAGAACATAATTATAAATATAT GAATGAAAATATGTATGAAAACAGTAAACTCCAAATCCTCTCCCAATATGTCATATTTTTACACGTATTA GCAATTTATTTCAATTGTATTATTACTTATGTAGTAAATTCAAGGTATCATATGTCTGAAATTGTAGCAA TGCTGCCAGAACAAATCATAGTTGAATTTGTATCTTTTTATATAAACATTTTGCACTCTAATATTTGGTG ACTCTGCCAGCTATTGTCCAGACAAAATGGAATATAATTTGTATATAATTGAAAATTGACTTGGCTTAAA ATCTGCTGTGAAACGATGCAAATTAGGTGCAATTAGTGAGACAGTTTGTAGCCATCAAGTAGAAATGTGA TTACTGGAATTAATTAATTGAAATAATCTTAATCAATATATTTATGATTCATTGTCAGAAAGATGGAGGA TTCGTTTGAATTTTTCATTGTTGCAGAAGAAACCAAATATCTTTTTGCTATTTGTGACTCTTAAAAGTGC AATTATTGGTGTATGGTAAAGATGGAAATCGCTTACATTATAAAACGTTATGTGACTAGTAAGTTGTAGT AGACTGGTTGTGTACATTATGTAAATGTCCATATGGATAGCTTTGTATATTTTGTCTGTTAAAACGTGAG TCTTTATGTCAATGTACATGCAATTCTTATTTCCTGATATGTTAATATTTTTTCACCTTCTGGTGTTGTT TTCTTATATTATCATGTGATGTCATGATTCTAACTGATTTGCACTTCTATCAAAATCAGGATTTCAATGT AAAGGGTTACATTTTTCATTTTATTTTGTTTTAAAATGTTTTTCATTTCTTGTTTTCTTACTACTTATCA ATCTAATCCTGAACACTTTCTCATTCTGTTTTTTTATTCACCCTGGTTCATCAGTTCTGTCACCTATTCT AAAAAAATCCCCCCTAACTTTGGGCCAGAGCTAACCTTAAGGCCAGGGTTAACGCACTAGCCAGGGTTGA ATACCTAGACCCTACTCAAAGCTCCATTATTCTTTGACTATACCTTAACTCATCGGTATGAAATTGATTT CCAATTTTCATTTCATGTCCAAATCCATCTTATTTTTTGTTAACTTGTGTTTCAAAATGACATGAACTTA TGGGTTGACGCATGGTCTTCCATTGATCAATGGACCAAGTTTTACTGACTTTTACTAAGGCTGCTTTCAA GAATATTGGGATGTTGGTTTGTTCTCTGGTTGTGACAACCCATTTATCTCTCAATGTATTTTAATGTACA TATCTGTAACTCTCTTGCTTAATGTATACATTGCCTGTCTATTGTCCATAACTATTTATGTCGGTATGTC ATATACGTATTTAAAATCGATCACTGTTAAGCTCTAATACTTGCCTTATCGCTTTTTGTTTAGCAAATGA AAATCATGACAATAGTCTTAAATTTTTTATCAGACACCATCATCCTATATGCTTATCTAATCTGCAGATA ATGCTGCAACAAGTCCACACATACTTTGACCTTCAGTGTTAGAAGCATGATATATTATTAGCTACTGAGT AATTATAACTGCCAGACGATTGACATGTCCACAACCATTTTCTTTTCATAAATTTGTAAAAGATAGATAT GAATTTTTTTGCCAGCTGAGTTTATGTTGCCTTTTACGTACATGTAACTCTATGCCAGCACATGTTCATA AAGTTGTTCCTCGTGCGCTTGATACATCTTCTCAATTATGTACCATCCATTAAAATGGAAGATGTGTGGT TCTGAGAATCTGAGTCAACCAAAATACATCGTTATATATGCTTTTAATGATTCTCAATTATCTTCCAACT GATAATCTTTGCCATTATACAGATGTCCATTTGTATGTTGTCATTGTTCAGTTAAATGTACTTACCTATA TGTATTCAAATTTATGTTTTTGTGCTGATAACAAGTACATCGAATATTGCAGTAGTATTATTTCTAGTCC TTTTTCTCCCCCTCCCATTTTGATTTTTAATCAGTAACAAATCCAGTAGATAATGAGGTTATTAGTTTTC TCTGTGACGTTGTTTGTTGGGAGACAGAAGGGCATTAACTTCTATACTTTGAAACAGAGTTAATACCCTT CTGGTTCTGACCAGATTAAATTAGGATTCATTGAACATTCTTATTTTTTTAATCCTTTTTAACATGTTCC TGTATGTAATACTGATTTTGTTTTTATTTTTCATCAAAGATTTATTTGCATAGTACTTGGATAAGCTTTA AGATGAGAATTCACGTCAGCTTGAAGCTATGTCATGGCACGTGTCTACTGCCAGTATATTTCGTGTGTGG TAATTGGTAATGTACATGGTTGTACATGCTAATGAATTGAAATGAAAAGTAAATTAAATATTTGACTTTG TGTTGACGAAATGCTTCTGTAAATATTGCTACATAGAAGAGATTTTTTATTACATTTGGGGTAAAAGAAA TCTGAATAAGTCTGAATGCATTTTCATTTCATCAGCGTTTACATCTTTTCGTTGCAAATCATTGGATAAC AGAGTGTGGAAGGGTTGTTTGGAGAATGTGGAAAAGAGAAAGAGGTTGGTAGAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds