Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114450.1 TSA: Strongylocentrotus purpuratus WHL22.618973.1 mRNA sequence CCAGGCCGTACGTAAGCTCAATGCATTAGCTAAAGACACGTAGCAGTCGAGATTTGCTAACAGATTGTCA AATCCTTGTCTACATTGTAGGAGGTTCCTTAGATCATGTCAGCAAATGAAGGGTCTGGGAATCCCAATGG AACGTCAGCTTATTTCAACAATGGCTCTGCTGATGGAAACAGTCCTGGCTTCTTTGACCACAATCAACCC AACATGAATCAGTGGGACTTTCCACCTCAGGACCAGACCTCTGCTCCAGGGGGAATCCCCCAAGACCTAC AGCACCAACAACAGTATCAACCTCAGCAGGCTCCCCAGTTTTACAACCCTGCAGAGTTCCCGAAGGCTGC AGCCGGTCAGGAGCCCGAAATCTTCAACCCTTACAGTGGAGGAAATGCATATCAGCACCAGCAACCTTTC TCTCAAGACGGGTTTCAGCAGCAGCAGCAGCAGAACGACTACGGCCAGCAGCAGGTCAACCCGAATGACT TCGGGGAAAGCACACCCCAGCAGCAGCAACAGCAGCAGACACTGAATCCTGAGGGTGATCATGGACAGAT GCCCTATCAACAAGGATGGCAAGCACCTTCTGATCCTGACTATGGACTTTCTACTTCAGTAAGCCAAGCT GAAGGACAGGATGGACACTGGCAAAACCAAGGCAACCATACTGGACAACAAGCGAATGATAGCTATCCGT CAGATCAATTCGCACATCCTGGATATGGTTATGGAACAGATATGCATCCTTCGACGAACAACCATCAAGA AGGTGGCCATTCTGAAAATCCCACACAGAATTTTGAGCAGGAAGATACTTCAGGAAACTCAGGATTTTGT GCATTTTTCAATGATGATGGATCAGACTTTGTGATTTCAAGCGATAAAGGAAGTGCACAGATCAGCGCGA ATGTGAGTGAAAGGACTAGCCCTGATACAAGTGCACCTGATCCCAATAGTCAATCACAGACAAATGAACG AGGGCATTTACAAGAAAGTGCAAAATCAGAAATTTATCAAACAAACTCAAACAGTGAGCCATTCCAACCT TCTCCACTAGGTAGCAGTCACATACCTACATCCGGCTATGATCAGACTTCCGAAAGAAACATGGCCAGTC CAGGAGAAATACAGGACAGGACCACAGAGTCATCCATATTGAATCAAGACAGTCAAAGTGTTGCCCCTCT AAGCAGCACCTTTGGTTCTCCCCATGATTGTGGTAGTGCTGTGACTGATAACAGCAATTTTGAGGGACTC CAGTCAGAGCCATATAACCAAAGTCCAAATGAAAGCAATTCTGTGCCAAACTCTGACATTGAGCCTGTCC AACGTGAAGAATCTCCAGCTCACTCATTGGTGTTGAACCCTTCTGAGAGTGCAGAAGTGGTCCATCAGTT GGATGCCTGTCACTCGGTGCCTGTGTCTTCGCTGTCAGCGCAGTCCAGTCAACAGGATGCAGAGTCGTTT GTGAAACCACTACCACCTCCAGTATCTCAAGAAGAATCACCACTATCCTCTCTGAGGAGTGATGGTGGTG ATCTTCCAAGCAGAGTTGATGGACCTGAGAATACCGCTGTATCTGCAACAAATTCTGGGCCACCTTCTAC CCAGGATCCAAATGCCAGTCAAACTGATGATCCCATTGTCCCCACACAGCCCTTACCACAGCAACACCAA CAGACACACCAGCAACCTTATCAACAACCACACCAACAACCACCTGTAAATCCTAACCAGTCAGACCTGA CTTCACCCTCAAATCCATCTTCTCTCTCAAACCACTCATCCCTTGAAACAAGTAAATCATCAGAGCCAGA GGATTCTGGAAAGAAACGCTCAGACTCGCTCTCATCAGGCTCTCATCCAAGTGCTTTTCGACAAGTGCGC GGTCATCATGGTCATAGAGATATCTCTGTGAACCCTTCCCCACCCTTATGGCAAACAGAAGTCCCTGCTC TTCCAGGGAACATTCTTTTGGCTCCTGCTCTGAATATATCAACCAATATGAATCCATTAGGACCTAGTAC CTTATCATCACCATCGCTGTCAACTCCAAGACAGCTTGCTCACTCTGTTGCCTCTGTGAGTGTGCCACCA GTACCATCAGTTGCTGCTTCACTACTTGCAGGAACTAACAACCCTGCTCCACAACCTCCAGTTAGCAACG GTAGCCAACCAAAGGCAACAACATCAGCACCAACTCATGTGCAACAGGTAACCCAGAGTGTTTCCCAACT GGATATGAGCAAGACTGTGCCTAACCCGTCAACATCAGTCGTGCCCCCAATGAGCAATGTTCAAGGTGTC CATATAGGCCAACAACAGCCACAAATGCTAAACCCAAACCTTAACCCAAACCCAAGCCAAAATCCTGTTG CCTACGTCCAACCTGTCGCCTTGACACAACCTAATCCCGTTCAGCCAACTGCTCAGCAACAAAATGTTGT TCAGCCACAAATGAGTCAAGCACAGCCAGCAATGTCAGTGCAAGGAATACAACCAACCAATCCTGCAGTT CCACCTCAGGGATTTGGTGTTGCCAGTACTCCCCTGCAGCAACCACAACAGCTTAGTGGTAACATGCCAA ACCAGCCACAGCAAACAAATATGAACAACCCACCACCTTTGCAACAACAAAATGTTGTTCCTGGGCAACA GGGTGTAACTGCAGTGCAACCTCAACAGCCATTACAACAAGACTATCAACACCAGCAGCAGCAAATGCCA CTACAACAGCAACAACAACCACAAGGACCCCAAAGTCAGCAGCCTGGTTACAACCAATACCCGCCTGGGC AGGGAGGCCAGTGGTACCCCACCGCAGCAGGCAGACAGCCCTACCCTCAGGGTAGCTACTACCAGGGCGG TGGGTACGGGCCAGGGTACAGGGGCTACGGGTATGGCAGCCCCTACGCTCGCCAAAGCGGCTACGCCAGG CAGGACCAATACTACCAGGGGTACGCCCAGCACATGCAGCGAACGCCACAGAGGTCGGCTGAAGGTCAGG TACGGGAGAGACCACAGTCGAGGCAGGGGAGTGAGAGGCCCACGTCGCGGCAGGGATGGCAAGATGAACA GGATTATGACCAGAGGTATCAAAGGAGTAGGAGAGATCCTAGGTATTACGCAGGTGTGGATGAGTATGGT CGTCCTTATGACAGACGCTATTATGAATACTACAGAAGGAAACAGAGCAGCCAATACAAGGATGAGGATT ATCAGAAGTATTATGAACAACAGTGGAACAGGTCAGGTTCTCAGCCATACTCACAAGATGCATCATCCAA TGTATCAGACGCATCTCTAACGGAGAAGAAAGACGACAGCCAAAATGAGAGTTTCAAAGAAGACTTCCAC CACCAAGGTGGAGGCACGCCTGAACACTACGGCACCGATCAGAGCGCCATCTACCCCTCCTCCTCCTCTG GGTACGACACCACCGACCCACGCTGGAGGAGAGATCAGGGCTACTATGACGGTATGAATGCATCAGACAG GGCAACCTATGACGGCAGTCAGTACTACAATCAAGATCAATCGTGGCAGCATGAGGAGCCGCAACAAAGT TCTTTCACACCCCCTCCACCGGAGAGGCGTACTCCGGTCAAGCACCCCCTACCCCACGTAATAGCCAGGT TCAGCCCTGGTGGTCAGCTCATCAAGGTCTTGCCCAACGTGCCAGCTGATGGCATGCCAGCTTTGGTGGA GGTTCACAATTTAGAGACAATGATTGAGCATTGCGATGAAGTTGCAGAATACAAAGGCTATCCTGGTCCG TTGATCAAGGGAGAGACACACAAGAATGATGTCCTGCATTTTGCTTCCGCCCAAGCCACGGAGTGCAGAA AGAGCACAGACCTTTCAGATAAAGAATCGGCAGCCCTACTCTGGGACCTGCTTGTGTTGCTTTGTCGTCA AAATGGGACCGTTGTCGAGACGGACATTTCAGATCTCCTTCTCAAGGACCACCCGATGACAAGCAGGGAA CCATCGTCTTCAGAAGAAGGGACGGCGGACAGAGAAACGACGCAGGACGGAGCTGATATATCTGACGTGC TCTCTCTGCTGCCCAAGTCTAATGATGCCCAGGACGCGGTAAAGCAGACTCATAGGTTTAGAGAGCTACT CCTGTTTGGTAGGAAGAAGGAAGCTTTGGAGTGGGCCATGAAGAGAGGTCTTTGGGGTCATGCTCTTCTC CTAGCTAGTAAGATGGACAACAGAACACATGCCAGTGTCATGACAAGGTTTGCCAACAGTCTTCCAATGA ACGATCCTCTGCAGACCTTGTACCAGCTGATGTCTGATCGACAACCTGCTGCTGTCACTAGCTGTAATGA TGAAAAGTGGGGTGACTGGCGCCCTCACTTGGCCATGGTGATGTCCAACCTGAGCAGCAGTGCTGAGGTG GGCTTCAAGAGTGTAGTGACTTTGGGAGATTCATTATCGTCAAGAGGTCTACTTCATGCGTCTCAGTTCT GCTACCTGATGGCTCAGATGGGCTTTGGTATCTACAGCAAGAAGACCACCAAGATTGTACTTCTCGGATC AAGTCACAACCTGCCTTTCAGCAAGTTCTCCACCAACTCGGCCATCCAACTGACAGAGATCTATGAATAC GCTCAGATGCTGGCAAACAAGCATTATCTCATTCCAAACTTCCAGGCTTACAAATTCATCTACGCCTGCA GGCTCGCTGACTTTGGATTTACATCACAGGCATTGAGGTACTGTGAAACAATTGCAAACACAATCCAGTG CTCTCCTAACTACTACAACAGTACACTTGTGAGCCAAGTGTGTCAGTTGTCAAACAGGTTAAAACATCAT GATCCCGAGTTCCACGACATGAGAGAGATCACTGAGCCTCAATGGATAGTTCCACTAGAGAATATATTCC TGCAGATAAATGAGGGACAATTAAAACCACCCTCGTCATCAGGCACCCCCATGCCGTGGGTGGAATCATC CTCCAACCTGAGCACGCTGGGTGGGGAGAGCACAGATGGGACAGTCCAAGCCATGGGGTCAACGTATCAG TATGATGGATACCAGCCAGACCAGGCTGGAGGTCAAGGATATGAAGGTCACGATGACCAACAACAAGTCA ACCAATACCCGGACCAGCAACCTGACCAGCAACAAGTGCCCTTCTATGACTACAACCAACAACAGCAGCT ACAACAACAACAACAAGAATACCAACAACAACAACAACAACAACAAGATGGTACACAACCTACTGACCAA CAGCAGCAGCAGCAAAATCCATATCACCAACATGGGAATTACCAGCCTTACATCAACCAGCCCATCAGTA GCAACTTTGCACCTAACCAGGACCCTGGGGCCTCAATAGGAAGCAACTTTTCAGAGTACAGCACAACAAC GAACCCTTCGGAGACGGAGGGAGACTCAACTGAGTTTGAACAAAGTGGTGCATCGCAGTTTGATTTCAAC GGTTACAACAAGATGCAGCAGAATAATAGGAGCAGGACCAACACCCTTAGCTCCATGGCTGGTCCTCCAT CCCCTCAGAAGACCCTGACCCCACCGGACTCGCCAAACTCCTTCAACGACCCCAGACACAGGGCCAGGAC CAGGACCACGTCGGGAGGGTCTACCGCATCGGCTGCTAGTCAGAAGGCACAGAAGCAGCAGCAGCAGCAG CAGCCTGAGTCTAAGGCACAGAATAATAAACCCAAACCAAAGGTAGGATAGCCTTCTAAAAGCTTGACAA AGTGGTTTACTGTTGTTGTTTTGTATAAGTGTTTGTTTGTTTGTTGTCGTCTTTGTTTTGAATTGATATT GTTCAATTGTTTCGTTATGTATCAGTTTTGTTTCTTTTGTGTCTTGTTTTATTTTGTTTTAGATTAAAGT GCATGATTTATACACCTCCATATCTTTCATGAAGTTTTATCCAGGCAGATCTGGGACCCGTTTCACAAAG CCTTTTTTCAATGACAAATGACAAAAATCAGTGACAAATCTGCTTATAACCAATCAGAAGCAAGGATTTC ACTAGCTTTTAACAAAAACTGTCATTTGTCACTGATGATAAGTTTTGTGAGACTGGGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds