Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038207686.1 PREDICTED: Patiria miniata ribonuclease 3-like (LOC119734281), transcript variant X1, mRNA CAACGAGTTTATTTTTAGCGCCCTCAGTCGACGGCCAACGATGACAGGTGGCGGCCGAGTAGGACCCTTT TTCTTGTGATCTCGGCCTACTGATAATACTACTTTGTGTTGGCTCACGATGGCTTCCGGTCGAAACCCCC AACATTTTACTGTCGACACAAGGCAGGCGCCTCCACCAATGAATAAGTGCCTGGTGCCGCCTCATCCATC TCAACATCAGCTTCCTGCTCAAGATCAAGGAGAAATGTGGCGTGGTGCTCCGGGAGATCATTCAAGTCAA GACACCAGACCGTTTCATGATCTACCATGTGGTGTCCAAGGGCAAAGCTATTCCCATCCTCCGCCTCGTC CTCACCAATTTCCTCCTCCTGGCTTCCCGCCTCTAGGTTATCTTGGTTACCCTCCTCCTCCAACCCCAAA TTTTCAAGTACCTCCACCCCCAAATTTTCAAGTACCTCCACCACCAGTCCCCGTCCCATTTGGTCCCCCT CCACCCTACACGCCTTACCCGGATACGCCGGAAGTCGCCGGACATCTGGGCTCCGATCGTTTGTTCGACC AGTTTTGCAACGGACCTCAGCAGTCTGGCAATTCTACTGGTTTTCAAACTTCACAGACAGATAATTCTAT GAAATACCATGAGACGGTAAGAAGACGGGAAACCAACGATGATAGAACTTGCCCTCCGGGGAGATTCCGA GATGGCAACCAATCAAGGAGTCGTTCAAAGGATGACAGGCCAAAAGCAGATGATCAAAGCAGGAGTAACA CAGGTTATGCCCACCCGCAAAGCTCAAGCTCAGCAACGCCAAGAAATCCTCACCAAACCTCTAGAAGATC ATCTCCATCTAGAAATAGATCTCCAAGAAGGCGTAGCAGATCACCGAGACGGTTGAGATCCCCGGCGAGA AGGAGATCGCCTAGTTCAAGGAGATCACCGACTAGAAGTCACTCGTCAAGACATAATAGGTCCCCAAGAT GTAGTCGATCGCCTCACGATAGCAGGACGTCCCGCAGGCAACCGGAAAGACGGCGGTCTAAAAGATCCAG ATCCAGGTCACCAGCGTCTGCGGGATCGAAGGGAGATTCTTCAAGGCAGGATCAATCACCACGGCAACAG AGAACATCCTACTCCCCGGGGAGAGGAGGTCGTCAAGACGATGGAGGCAGAGACAATGAGAGGAGAAGAC AAAGAAGACGATCCCCGATCAATCAGACCCAACGATGGGATGAGCTGGAGGCCAAGACGGCCGCTCTCCA CGACTCCTACAAACCTGCCACACTGGCATCGTGTGCGGGTCAAGATGATAAGACGGAGGAGACCACAACG GAAGATGAGCCAGCATGGATACAATGCTCACCCAGGGAAAACTTCTACTCTGGGGATTCTAAGATGCAAA AGAATGAATCGACAGTTGCTGCAACTGATAAACTTAAAGACCTCCTCGGAAGGTTCCAAGAAGAGATTGT CGACAGAGGAGTGAGAGCTAGAGAAGTGCAACCCAAGCTGGAAGTACCACAACCTAAGGTTCACTGGCAT GTCCATAAAGATTCTGATGCTGAATCATCCGATGACAGTGCGTCTTCATCTTCATCGTCTGAGGAAGAGG AGGAGAATGAAGACGATCCTCTAGCTTTCCTTCAGATGAAGGAGAAACATCCAGCAAGACTTGCTGATAA CCTGTGGTTTAATGATCCAGGAGAGGTGAACGATGGACCCTTATGTCGGTGCAGTACCAAAGCCAGACAG GTCGGCATAAGACACAACATCTATCCTGGTGAGAAACCGATCCCACTATGTGACCCACACACCAATAATG CTGGCAAGCTGTACCATTATCGCATCACCATGGCCCCAAGTACCAACTTCCTGACTCACCAACCCACCGT CATCGAGTACGATGACAGAGAGTACATCTTTGAAGGTTTCTCTGTCTTCTCACACTGTAAGCTCGACAAC ATCCCACCTTGTAAAGTGGTACGCTTCAACATCGAGTATTCCATCATCTTCATGGAAGAACCAATGCCAG AGAATTTTTCGGTAAGAGGACTGGACTTGTTTGGTGACTTCCTCTTCTTTGAGATCTTGGAGCTCTACGA CTTTGAGCTGGTCAGCCGAGTCGGCGGTTGTCGCTTCTTCCACTTCATGCCGAGGTTTGCCCGGCAGCTT CCGAGCAACGGCAAGGAGATCTTATCCATGCATCACGTGATCCAGCACCTGCTGAGGATGAGTCGGCCGG TCGTGGAGGCCAAAGACTTGAAGTCGTGGCTGGAGTGCGATCAGATCACATGGGAGCGGTACGCCGAGGA GCTGAAGGGGATGATTGTAACGTGTCCTGGAAAGAAGCCGAGCTCAGTCCGTGTCGATCAGGTGGACAGG GAACACGACCAGAAACCTGATGACAATGAAGGACTGGATGACACGTATCCGACCATTGTACACTTTGGAC TCCGACCAGCACAGCTCAGTTACGCAGGCAATCGAAACTACCAAAACCTGTTTAAGTCCTACCTAAAGAT GAACCATCTGCTGGCCAACAAACCCAAAGTCAGCATTCAGGATCGACAGAAGCTCGCCGAGAAAGAGAAG AAGTTACAGAGGATACGCTTACAAGGTCACATGACGCGTGAGGTCACGGCCGAGATCTGCAGTAAGGAGA TATTGATGACGGGCATCGGGTCCGATGTTTGCCAGCACGCAATGATGTTACCAGTGCTTGTCAACCACAT CCGATATTTCAACTGCCTCTACAACATCGATGACATCATTGGATACAAATTCAAGGACAGGATTTTGCTG AAGCATGCTATGACACACCCGTCCTACCGCCTGACCTATGGCATGAATCCAGACCATGTACGTAACTCAC TGTATAACTGTGGAATACGACAACCTGACTACGGAGATAAGAAGAAACAAGTAGAGAGATCAAGAAAGAA AGGTATCAATACATTGATTAAGATCATGTCTGAGATGGCGGCTCCTGAGGAACTATCCTCCCACATTCAT CATTACGAGAGACTGGAGTTCCTGGGTGATGCTGTTGTAGAATTTGTCACAAGCACTCACCTGTATTACC TGTTCCCACATCTTGAGGAGGGCGGTTTGGCAACATACAGACAGGCAATAGTACAGAATCAACATCTGGC TGTCTTAGCCAAGAAATTGGAACTGGAGCGTTTCCTGTTGTACGCCCACGGACCGGACCTGTGTCGTAGC TCAGACCTGAAGCACGCTCTGGCCAACTGCCTGGAGGCTCTGATGGGGGCGCTGTATCTAGAAGGAGATA TCACGGTCGTCAGACGCATCTTCTGTAACCTCTTGTTTGATTCGGAGAAGCTGAGAAGAATCTGGATGCA GCATCCTAAACACCCTCTCCAGCTTGAGTTTCCTCAAGGTGACCGACATATGATTCAGTACTCGAGCATT TTACAGATGTTGCATAAGTTTGAGGAGTCAACAGGAATCAAGTTCAGACACATCCGTTTGCTGGCCAGAG CTTTCACACAGCGAACAATGAGCTACACCAACCTGACAAGAGGCCACAATCAGAGAATGGAGTTCCTGGG TGACACTGTACTACAACTCATCACCTCCAGCTACTTGTACAAACACTTCCCTAATCATCACGAGGGGCAC TTGTCTCTTTTGCGTAGCTCTTTAGTCAACAACAAGACCCAGGCCACTGTAGCCTCCGATCTAGGCATGT CAACTTACATCATTGACGCTAAGAATCGTACTCTAGAAGACGGTGGTCCTCTACCAACCAAACTCCTAGC TGATCTTCTGGAAGCTTTTGTTGGTGCTATGTACGTGGATCAGGGAATTGAGGCAGTTACCGTCTTCTGT CAAGTTTGCTTCTTCCCTAGGCTCAAGGATTTCATCTATAGTCAGCACTGGAATGATGCCAAGTCACAGC TACAGCAATGCTGCCTGACACTCAGAACAGAAGGCAAGGAACCAGACGTACCCCAGTACAAGGTCATCAG TCAGCATGGTCCCACCAATAACCGTGTCTACAACGTGGCGGTTTACTTCAGAGATAAAAGATTAGGCACG GGGTGTGCTTCAAACACTCAAGATGCACAGATGGAGGCAGCTAGGGATGCATTGCAGAATTATAATTTCC CCCAACTTCACCATCAACGCATGGTGGTTGAGCGGAGGTACAGCCAAGAGGCCAAAGACAGAGGAAGTCG TCACAGACCACGATCAAATAAGATTTGATCATCTCGGCAGGGATTCTGTATAGAAAACAAGGTTTTTACA AGGTAAATGTCACAGCGGATCGTCACAACTTGAAAAGCTTTTACAGTTAGTTGCTGTCGATGTAGCCATG TCAATCACAAGTCCTTACAAATCAATCACAAGTCATCATAAGTCAATCACTTATTCCTCACAAATCAATC ACAACGTCACCGTTTTTACAAAGGGACGGGTATGTCAAAAACGACATTTTTGTTAAGTTTCGAGGTTTTT TTAGCTTACGTTGAAAAACCACTCTGAACCATTCTGACTTGCTTTGAGAAGCAAAACCTGCGTAACGTCT TAATAATGCTGTATCAGGGGCATCTCAATAATTGCATTTTGCATTTTCAAGGGCGTTAAAGTAGAATAAG TGAAATTTCTGTTTTCATGAAGGGACGGACGTCTTTGATACATTTCAGACACGCGCACCCAAACATACGT GCCCTCCACCTATGGCAAAACACATACTGCTCAGTAGACGGGCAGATCTTCTTATCAGAGATTACAATAT TGTTATGGTTATTATTTTTTATTATTATTTGAATGCCTTGAAATGTTCAGATATGTGTCTTTTACAATGT TAAATGTGATATTTTATCAATTTGTACATTGTGTTAATAGCATTTCTGCATTTCGTCTGTTGACAACCTT AAGATGTTACGTAATTAGAGACTTTTCTTTTCACAACTACAAGTTGTTTTGGTTAATGTTGGTCACGTGA CCACCCTCAGCACTCTTAGATAATTCCGTCATTCTTGTAAGCAGTCGTTCAATGTGTGTTGGGCATGTTT TACAAGCTAAAACTCTCGGAAGTGGAAAGTCGGCGATGAGTTTTGGCAAAAAGGAGTGTAATTTTTCCCA ATAATTTATTTATTTGTCTTGAGATTATGTTTGTTTTAATCTGTGTGCTATTTTGAAGATGACTCAAAAT GAGAAAATATTTTTGGGGTGGAGTTTGTGGGGGGGGGGGGTAGTCTGAGTATCACCTGTTATCCACGGAA CCAAGTCTCCTGTCTAACGTCTGATATATCTAAGCTTGTGTGATATCATTTCATTCCATAATCAGGACTA AGATTGTGATTGGTCAATTTCGATGCCGTATTTTTGTAATGCAACAATTTGTACAAAATGCTACTCGTGG GTGTGATGTTTACACATGTGGGGAGCTTGCATTACGCGCGTATAGAAGGCGCCTGCTGATTGGTCAGTTT CTTGAGGTCATACACAGTCTAGTTGCATAATTAATCACCGAATCTGTTTACGTTTTATACACCATGGTCG GCTTCGCCAGGGCCAGGGTCAATCAC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds