Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT095105.1 TSA: Strongylocentrotus purpuratus WHL22.742173.0 mRNA sequence TGCAAGATGTGCTGAGCAAAGTGAGTCACACATGTATTTGCATGTCGCTGTATTAAACCATGATGCTTAT ATTTTTCTCCATCACCCATCTTCCCCTCAGTACAAAATGGACCGATAAACCCCAAGGAGAATGTTGGTGA AGGAGAACTAGAACGCTACATGCAGTCCAACCAGCCCGCCCATCAGGGGTACTCGTCAGCGCCCAGTATG GCTGCACAGGATTCCTACATGCCAGCAACGTACTACCAGTCACCTTACTCCTTCCCATCGTACTCTATCC CTGGAACTGAAACAACCTGGTCGACAGGTGGAGACACCTTTAACAATTTTAACTACACAAACTATGAGTC GAACTATGCTGCCCCAACGGACTACTACAACCAACCTGGCACAACCCCTCCCTACTTGAACCAGACCTTC AACTTTTTCCCTCCCAATGCAGACTTTATGCCGGGGACCTGGGCTAATAATTCTGCACCTGCTGCCCAGC CCCAGGGAACAGCTCGCACCCAGCCCCAGGCCCAGGCACCGACTGCCTCTTATTATGACTACCCCAGGTA TCAGGCTAATCCGAACTCGATGACCGGTCAGCGGAACTACAGCCAGGGTTTGAATGGACTTGACGCGCAG GATGGTAAAGCCCATGGGATGAAGGCAATGGAACTGGGAATGTCTGGACTGAACATCGGTGCTCCCATGG ATAAGACTGCTATGAATGTTGCTGGACGGGAAGTTCTGAAGCAGGATGTGATTCCTCCCAAGCCCCAAGC GCCCAGCTTCTCTCAGGCTCTGGCTGGGGCAGGAGGAACTGCACAGCCCCCTCCTCAGAACACAGCAGTG CCAAAGCAAACATCGTGGGCCTCTATCGTTAGTAAGCCTGCAAAGCCGCAGCCCAAGAAGACGACAAAGA CCGGATCCCATGCTCCTGTACCTACTCAGCTTCCAACAATGAAGCCCCCTATGACTATTGGAACTTGGAA CAATGGCGACAAGACTGGTAATCCTCCTAAGCCAGCCGGCACTGCTACCACCATGCCCTCTCCCCCTCAA AACCAAGCCCAACCGCAACCTCCTGCTGCCATCCCTCCTCAGCAGCATGCCCAGTTGCAACCCCAGCAAC CTCCCATGCAACCCCCGCAGCAGCAGATCCCTGTTCACCCTCAACCACAAGTGCAACATGTCCAGCCTCA GCCAGTTGCCAAGATTGAGGTTTCTCAGCCTCCTCTCACTGCGGCTCAGACTGTGTCCCAGCAAAAGCCG GTGCTGCCGACGAGTGACGTTCCACGAAGGGGACCTCAGGCTGTTGTGCAACCCCAACCCCAGCAACCGA GAGTGTGGGACTCAAACGGACAGAATCGCGGCTATGGACAGAGATCTACTAACCAAAGCAGTACCGCGGG TCTGGCACCCATTACTGGTGTGCCGGGCCAGAAAAGTGATACGGATCACCCGGTGTTGGAGAAATTACGT TCTATCAATGACTATAACCCAACTGACTTTACACTTGACCTTAAGAACTCACGAATCTTCATCATCAAAA GCTACTCAGAAGACGACATCCATCGCTCCATCAAGTACGGTATCTGGTGCAGCACCGAGCATGGCAACAA GCGCTTGGATGCTGCTATGCGGGAACGCCAAAGTAAAGGTCCTGTGTACCTAATTTACAGTGTAAACGGT AGTGGGCATTTCTGTGGCGTGGCGGAAATGATGTCTGAGGTGGACTACACAACCAACACTGGTGTGTGGG CCCAGGACAAGTGGAAGGGTCGCTTTGATGTGCGGTGGGTATATGTGAAGGACGTTCCGAACAGCCAGCT TCGGCACATACGGCTGGAGAACAATGATAACAAGCCTGTGACCAACTCGCGTGACACTCAGGAAGTGTTA TTGGACAAAGCCAAGCAGGTGATGAAGATCATTCACAATTTCAAGCACACCACCTCCATCTTCGATGATT TCAGCCACTATGAGAAACGGCAAGAGGAGGATTCTAACCGAAGGGTTGACACCCGTAGCAGCCGACGTGG AGGGCACCGAAACTAAATCCCCTTGGAGAGCGAGGTTTGTAATGATGACTGTCAGCTAATTTTTGCAGAG TCGTCATGGAATACGTCATGCTTAAAAGGAAAATTATTATAAAAAAAACAACCTATCATCTAGGGTTTAG AAATCTGCTACACTTGTAATTGCTAAGAAAAAAATTATTGAAAATTATCTGATGCGCAGGAAAACATTGA ATAAAGTCCGGTCTGTATTTTGCTTTCAGTGATATGGAAAGGCTTATGCTATTGGCCCCCGTTCATAAAG GAGGAAGGATATGTTTATTTGCCATTGTGAAAGGAAGATGCGGATGCAAAGCTTTGAGATGCATAATTTG GAGGAAGTTTGGTTCTGAAGAAAGGTGCTAGATTGTGGAGACTCTGTCCAAGATGGCTGTCGAGTTCCTT TCAGAAAACCGCGATATTTAATGCCAATTGATGTATTTGGGACTACGGGGTTCTCATAGGAGATGGTGGT TTAAAAAAACAGCAATGTTTGGAAATTTCAGCACGGAGAAGAGCATGCGAGGGAGCGATCACTTCAATGA ACTACAAAGAGTCGGCTATTTCATATATTTGACAATTACAAGGAATCGTGTTACTTCTGCTGTTGCGTCT CGGAAGCTTCTTTGGAAAGAATAAAGCGAAAAAAACAAAACGTATCATATATCCAGTCATTCTGGTAGAA CCAGTACCTTGGCTACATTGTGACAAAAAAGACATTTTAAAAGAGGCACCACTTGATTTTTCAGTTTTAT TTTCTTGTGAAACTTGTACCCAAATATCAGTAGCCAGTGTTGATGTTGGTGGTGTCCACTCTTATATTCG ACCTGAACGTTTGTGTCAGTTATGCCGAACAAGAACTAGACATTGTACTTACGAAATGGACAGTACATTA ACAGACCTTGTTTTAAAAGACAATTGATGTTTAAGAGACACTTTGCAACGACAAAAAACACAAAAAGACC AACGTGACATGGATTGGATGAAGCATCGAGGAAAAGAAATGGTGTGACGATATTTACTGCAATGGCTTTG TGCAAGATTCACATGATAGTGTTGGAAGTGTGACGCTCTGAACAACCAGTACCGGGCTACTTCATCTGTA GAATACACTCCTTGTCTTGTTTTCTCCGTTTGTCCATGATATGTTCCAAGTAATTTTCTGTTTTTTGTTC ACTGTCAAATGAGGAAATTTGATGCATTAGCTGTGTTATAATCACTCTTGGTCACCTGGTGTTTCTCCAT AATGAATATTTTTTCCAAATCACAGATTCCTAAATTGTTAATTAAACCATGAAAGGGTTTACATTAACCC TGTAGCTACTCACGTAAGTCCAGCCATACCTAGAAAATAAAAAGAAAAGATCCTTTTTCAGTCGTTAATT TGAAATTTTGAATAATGAATTGTAATGAATATTTCTTTAAGAAATTGATTCCAATTGAATTGTATGATTT CACCTTGTCTTTAGGTTCTTGTAGTGCAATGGAATTCCACTAACCACCAATTTCAATTTCAAATTCTTCT GAAGAATTTTTATTCTTAAAAAGAATTTTCAAAGCCTAGTGGAAGTATTTGTGATGAGTTTTGGGGATTT ATACCACGAGGGATCTCTAATTTCAGGTGTCTTTCATCTCTGGTGTGAGCCTTGTATCACCCATAACTAA AACTGCACGCTGGTCATTGCTTTATGTAATTACATGTATGTCTTTGTTTTTAAAGTAGGTGGGGATGATG GAGCATTTCAAAAGAATCTCTGTAAAATAAAAACTGATCACTCAATACTTTCATATGGCACTTACTTGGG ATAGACAAAATTGCAAGAAGATACATGTACCTGTTGCCCTCCCCCCCCCCCCCCACAACAAAAATCATCT CTGTTTCACAAGAGATTTTGGGATGGCGATATCTTATAGAAATGGAGAACATTGTGTCTCAGGCATTATC TTCCTGCCTGTTCAGTAATTTGGTTGGGTATCCCACTACTATCCCTTGAAAAAACTGTGTTTACTTTTTT GGAATGTTGTAGAGACAGGTCTCTGATTTGATTACGGCAAATATTGTTTTCAACTCCAATGCTTTGCTCC TTGCACTTTTAAGTAATTTATGGTAAAAATGTTGTGTCTTGGTACTCTGGAACTTGCATTATTGTTTTCT GTGTTCTAAGTTCTGAAAAATAGACTTTCATGAATTGATATTCTCAATCTGATCTTTATCAGGGACACAT TAATTGTGTGAATTGATATTTTTTTGTACATTTACCTACCTTTAAGTTGAAAGAAAAAAACCCAGAATTA TAACAAGTTGAACCCCAGATGTTTGATTGTAATCTTTATGGCTATGTGTGTAGGAAATGAGAAGGCAATG TTTTAAACTTTTTAATTTACAAGATATATTTGCAAATACTAGAAACATCTGAAAGGTATAAAAATTATAA ATTACAGATTTTCATTTTACTCATATTGTTATCATGTTTCATTTTGCATAACCTGAAATGATGAAATGAA TTCCCCTGAATAATACTTTGGTGGTATGTTATTGTATTTTATTTTTTTCATTTTTATTTTTCATCTTTCA TCTACATATCTCATCTATAATTGGCAATTTTAAATAGAAAGTTAATTGGTTCTTTATAGCAGTGAAAAAA CCAGTGATATTCAGCATTCTTTCACTGATGTTCCTTTATAAATGTGAAATTTGACCGACAATAATGAATC TTCCACTCTACATGTTTGTGTTCTTAAATCCATAGACAACCTGTTTGTACTAGGTTGGATGTAGTTTTGT CATTTCTAGTTTGCTTTATAGTTTTGTTCTGTTTTGATACATAATGCTAGAAATACATTGCCAGGAGGTT GACCTTTCATGCAAACATGACCTTTGACCTCTAGACTCCCATTTTGCACACCAAGTACCACTATTATTCA CTAATACATGTACATTCTTTTTTTGCGAAACTTGTGAAGTGGGAGATAAAAACTACCAAACGTATACTTG AAGGGACTTTTAGGATTGACTTTGATTTTAACGGGAACTTACCTACACGAAACAATTTAACTGGACTGAC TTTCACCTAGTCAATCTGTTAAATGATGTGGCCATAATTTAATAAAAAGTGTGATGATGTTTTTAAATTT GATCTTGGTACTTTTATTTATATCTCTGTCTGATCAATTATGAGTGATTAAATGTATTTCATAACTTTAA AAAGTAAGTGGTCGTAGTTTAACTATAATTATTATGTTAACTGTTTTAGAGGAAAGTGAGATTACAAAAG TTGCAAAAATAATGTGTTTTACTGTTAAGGCAGTTTCTTATACATGTACTCTCTATTGGAAGGGTGACTT TGCACCAATGGGTCTACAATTAATTGCACACGTTATAGTAGAGCTTTATCTAGTATTTTCATTATGTGTA ACTGCATTGCAAGACTACAGTATATCTGCAATGCATGTCTGTCATTGAAAGTGAGCCCATTGTTTTTATA ATTTGTCACAAGTTGAAAAGAATCTGGCAATTTTAACTAGAAAATTGATATTTGTGATATGGACTAAAAA AAAGTCTTTGTGTTTTACATTGTTGTAGTCTTGTTTCAGACTGTAACCTGTATAAACCATAATTGTGAAT CCAATTGAGTTCTGGAGAAAAGACTACTACTTTCATGAAAGAGTTACAGTCGTATGTACTGTATTAAAAT CTAGCTTTTAATCTTGCAGTTGGCAACCATTTTGTGATTTTGTATCCGGTGTTGCATAGGATCTGAAGGT CGAGACATTTTAAAATCTACACTATATGTGAAACAACAAAAAAGATTGATTAGATATGAATAAAACCACA TTGGAATCAGAAAGTAATGTATGAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds