Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_781828.5 PREDICTED: Strongylocentrotus purpuratus YTH domain-containing family protein 1 (LOC581847), transcript variant X2, mRNA GAAAGCGCGACTACGAGCCAGCGCTAGGTCTTTCTGCAAGCAAGGCACATGTACTTCTTGGGAATCCACC ATTGTTATTGGGATCGGCCGACGTAAATTAGCGTTGTTTTGCAATACGATTTTCCGTCAAGAGGAAGGAA TTACGATCGTGTGAAAAAAAATTATTTACCCGTGGACATTTGGACTGTCAGTGAAGACTTTATTTTGGTG GAATCAGGGGTTATTATTGGATTTATAAGGCAATGTCTGCGGCGGCAGGAGTTGAACAGAAACCAAGAAG CCAGAGGAGTCAAGTACAAAATGGACCGATAAACCCCAAGGAGAATGTTGGTGAAGGAGAACTAGAACGC TACATGCAGTCCAACCAGCCCGCCCATCAGGGGTACTCGTCAGCGCCCAGTATGGCTGCACAGGATTCCT ACATGCCAGCAACGTACTACCAGTCACCTTACTCCTTCCCTTCGTACTCTATCCCTGGAACTGAAACGAC CTGGTCGACAGGTGGAGACACCTTTAACAATTTTAACTACACAAACTATGAGTCGAACTATGCTGCCCCA ACGGACTACTACAACCAACCTGGCACAACCCCTCCCTACTTGAACCAGACCTTCAACTTTTTCCCTCCCA ATGCAGACTTTATGCCGGGGACCTGGGCTAATAATTCTGCACCTGCTGCCCAGCCCCAGGGAACAGCTCG CACCCAGCCCCAGGCCCAGGCACCGACTGCCTCTTATTATGACTACCCCAGGTATCAGGCTAATCCGAAC TCGATGACCGGTCAGCGGAACTACAGCCAGGGTTTGAATGGACTTGACGCGCAGGATGGTAAAGCCCATG GGATGAAGGCAATGGAACTGGGAATGTCTGGACTGAACATCGGTGCTCCCATGGATAAGACTGCTATGAA TGTTGCTGGACGGGAAGTTCTGAAGCAGGATGTGATTCCTCCCAAGCCCCAAGCGCCCAGCTTCTCTCAG GCTCTGGCTGGGGCAGGAGGAACTGCACAGCCCCCTCCTCAGAACACAGCAGTGCCAAAGCAAACATCGT GGGCCTCTATCGTTAGTAAGCCTGCAAAGCCGCAGCCCAAGAAGACGACAAAGACCGGATCCCATGCTCC TGTACCTACTCAGCTTCCAACAATGAAGCCCCCTATGACTATTGGAACTTGGAACAATGGCGACAAGACT GGTAATCCTCCTAAGCCAGCCGGCACTGCTACCACCATGCCCTCTCCCCCTCAAAACCAAGCCCAACCGC AACCTCCTGCTGCCATCCCTCCTCAGCAGCATGCCCAGTTGCAACCCCAGCAACCTCCCATGCAACCCCC GCAGCAGCAGATCCCTGTTCACCCTCAACCACAAGTGCAACATGTCCAGCCTCAGCCAGTTGCCAAGATT GAGGTTTCTCAGCCTCCTCTCACTGCGGCTCAGACTGTGTCCCAGCAAAAGCCGGTGCTGCCGACGAGTG ACGTTCCACGAAGGGGACCTCAGGCTGTTGTGCAACCCCAACCCCAGCAACCGAGAGTGTGGGACTCAAA CGGACAGAATCGCGGCTATGGACAGAGATCTACTAACCAAAGCAGTACCGCGGGTCTGGCACCCATTACT GGTGTGCCGGGCCAGAAAAGTGATACGGATCACCCGGTGTTGGAGAAATTACGTTCTATCAATGACTATA ACCCAACTGACTTTACACTTGACCTTAAGAACTCACGAATCTTCATCATCAAAAGCTACTCAGAAGACGA CATCCATCGCTCCATCAAGTACGGTATCTGGTGCAGCACCGAGCATGGCAACAAGCGCTTGGATGCTGCT ATGCGGGAACGCCAAAGTAAAGGTCCTGTGTACCTAATTTACAGTGTAAACGGTAGTGGGCATTTCTGTG GCGTGGCAGAAATGATGTCTGAGGTGGACTACACAACCAACACTGGTGTGTGGGCCCAGGACAAGTGGAA GGGTCGCTTTGATGTGCGGTGGGTATATGTGAAGGACGTTCCGAACAGCCAGCTTCGGCACATACGGCTG GAGAACAATGATAACAAGCCTGTGACCAACTCGCGTGACACTCAGGAAGTGTTATTGGACAAAGCCAAGC AGGTGATGAAGATCATTCACAATTTCAAGCACACCACCTCCATCTTCGATGATTTCAGCCACTATGAGAA ACGGCAAGAGGAGGACTCTAACCGAAGGGTTGACACCCGTAGCAGCCGACGTGGAGGGCACCGAAACTAA ATCCCCTTGGAGAGCGAGTGATATGGAAAGGCTTATGCTATTGGCCCCCGTTCATAAAGGAGGAAGGATA TGTTTATTTGCCATTGTGAAAGGAAGATGCGGATGCAAAGCTTTGAGATGCATAATTTGGAGGAAGTTTG GTTCTGAAGAAAGGTGCTAGATTGTGGAGACTCTGTCCAAGATGGCTGTCGAGTTCCTTTCAGAAAACCG CGATATTTAATGCCAATTGATGTATTTGGGACTACGGGGTTCTCATATGAGATGGTGGTTTAAAAAAACA GCAATGTTTGGAAATTTCAGCACGGAGAAGAGCATGCGAGGGAGCGATCACTTCAATGAACTACAAAGAG TCGGCTATTTCATATATTTGACAATTACAAGGAATCGTGTTACTTCTGCTGTTGCGTCTCGGAAGCTTCT TTGGAAAGAATAAAGCGAAAAAAACAAAACGTATCATATATCCAGTCATTCTGGTAGAACCAGTACCTTG GCTACATTGTGACAAAAAAGACATTTTAAAAGAGGCACCACTTGATTTTTCAGTTTTATTTTCTTGTGAA ACTTGTACCCAAATATCAGTAGCCAGTGTTGATGTTGGTGGTGTCCACTCTTATATTCGACCTGAACGTT TGTGTCAGTTATGCCGAACAAGAACTAGACATTGTACTTACGAAATGGACAGTACATTAACAGACCTTGT TTTAAAAGACAATTGATGTTTAAGAGACACTTTGCAACGACAAAAAACACAAAAAGACCAACGTGACATG GATTGGATGAAGCATCGAGGAAAAGAAATGGTGTGACGATATTTACTGCAATGGCTTTGTGCAAGATTCA CATGATAGTGTTGGAAGTGTGACGCTCTGAACAACCAGTACCGGGCTACTTCATCTGTAGAATACACTCC TTGTCTTGTTTTCTCCGTTTGTCCATGATATGTTCCAAGTAATTTTCTGTTTTTTGTTCACTGTCAAATG AGGAAATTTGATGCATTAGCTGTGTTATAATCACTCTTGGTCACCTGGTGTTTCTCCATAATGAATATTT TTTCCAAATCACAGATTCCTAAATTGTTAATTAAACCATGAAAGGGTTTACATTAACCCTGTAGCTACTC ACGTAAGTCCAGCCATACCTAGAAAATAAAAAGAAAAGATCCTTTTTCAGTCGTTAATTTGAAATTTTGA ATAATGAATTGTAATGAATATTTCTTTAAGAAATTGATTCCAATTGAATTGTATGATTTCACCTTGTCTT TAGGTTCTTGTAGTGCAATGGAATTCCACTAACCACCAATTTCAATTTCAAATTCTTCTGAAGAATTTTT ATTCTTAAAAAGAATTTTCAAAGCCTAGTGGAAGTATTTGTGATGAGTTTTGGGGATTTATACCACGAGG GATCTCTAATTTCAGGTGTCTTTCATCTCTGGTGTGAGCCTTGTATCACCCATAACTAAAACTGCACGCT GGTCATTGCTTTATGTAATTACATGTATGTCTTTGTTTTTAAAGTAGGTGGGGATGATGGAGCATTTCAA AAGAATCTCTGTAAAATAAAAACTGATCACTCAATACTTTCATATGTCACTTACTTGGGATAGACAAAAT TGCAAGAAGATACATGTACCTGTTGCCCTCCCCCCCCCCCCCCACAACAAAAATCATCTCTGTTTCACAA GGGATTTTGGGATGGCGATATCTTATTGAAATGGAGAACATTGTGTCTCAGGCATTATCTTCCTGCCTGT TCAGTAATTTGGTTGGGTATCCCACTACTATCCCTTGAAAAAACTGTGTTTACTTTTTTGGAATGTTGTA GAGACAGGTTTCTTATTTGATGACGGCAAATATTGTTTTCAACTCCAATGCTTTGCTCCTTGCACTTTTA AGTAATTTATGGTAAAAATGTTGTGTCTTGGTACTCTGGAACTTGCATTATTGTTTTCGGTGTTCTAAGT TCTGAAAAATAGACTTTCATGAATTGATATTCTCAATCTGATCTTTATCAGGGACACATTAATTGTGTGA ATTGATATTTTTTGTACATTTACCTACCTTTAAGTTGAAAGAAAAAACCCAGAATTATAACAAGTTGAAC CCCAGATGTTTGATTGTAATCTTTATGGCTATGTGTGTAGGAAATGAGAAGGCAATGTTTTAATTTTTTA AATTTACAAGATATATTTACAAATACTAGAAACATCTGAAAGGTATAAAAATTATAAATTACAGATTTTC ATTTTACTCATATTGTTATCATGTTTCATTTTGCATAACCTGAAATGATGAAAATGAATTCCCCTGAATA ATACTTTGGTGGTATGTTATTGTATTTTATTTTTTTCATTTTTATTTTTCATCTTTCATCTACATATCTC ATCTATAATTGGCAATTTTAAATAGAAAGTTAATTGGTTCTTTATAGCAGTGAAAAAACCAGTGATATTC AGCATTCTTTCACTGATGTTCCTTTATAAATGTGAAATTTGACCGACAATAATGAATCTTCCACTCTACA TGTTTGTGTTCTTAAATCCATAGACAACCTGTTTGTACTAGGTTGGATGTAGTTTTGTCATTTCTAGTTT GCTTTATAGTTTTGTTCTGTTTTGATACATAATGCTAGAAATACATTGCCAGGAGGTTGACCTTTCATGC AAACATGACCTTTGACCTCTAGACTCCCATTTTGCACACCAAGTACCACTATTATTCACTAATACATGTA CATTCTTTTTTTGCGAAACTTGTGAAGTGGGAGATAAAAACTACCAAACGTATACTTGAAGGGACTTTTA GGATTGACTTTGATTTTAACGGGAACTTACCTACACGAAACAATTTAACTGGACTGACTTTCACCTAGTC AATCTGTTAAATGATGTGGCCATAATTTAATAAAAAGTGTGATGATGTTTTTAAATTTGATCTTGGTACT TTTATTTATATCTCTGTCTGATCAATTATGAGTGATTAAATGTATTTCATAACTTTAAAAAGTAAGTGGT CGTAGTTTAACTATAATTATTATGTTAACTGTTTTAGAGGAAAGTGAGATTACAAAAGTTGCAAAAATAA TGTGTTTTACTGTTAAGGCAGTTTCTTATACATGTACTCTCTATTGGAAGGGTGACTTTGCACCAATGGG TCTACAATTAATTGCACACGTTATAGTAGAGCTTTATCTAGTATTTTCATTATGTGTAACTGCATTGCAA GACTACAGTATATCTGCAATGCATGTCTGTCATTGAAAGTGAGCCCATTGTTTTTATAATTTGTCACAAG TTGAAAAGAATCTGGCAATTTTAACTAGAAAATTGATATTTGTGATATGGACTAAAAAAAAGTCTTTGTG TTTTACATTGTTGTAGTCTTGTTTCAGACTGTAACCTGTATAAACCATAATTGTGAATCCAATTGAGTTC TGGAGAAAAGACTACTACTTTCATGAAAGAGTTACAGTCGTATGTACTGTATTAAAATCTAGCTTTTAAT CTTGCAGTTGGCAACCATTTTGTGATTTTGTATCCGGTGTTGCATAGGATCTGAAGGTCGAGACATTTTA AAATCTACACTATATGTGAAACAACAAAAAAGATTGATTAGATATGAATAAAACCACATTGGAATCAGAA AGTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds