Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990030.1 PREDICTED: Strongylocentrotus purpuratus kinesin-like protein KIF28P (LOC586759), mRNA ATGTAAAGATCGCGAGCGATTGGCGTAGTGTTGCCAAGGAACCTTATTCAAGATGGGGGAAAACGTGAAA GTTGCTGTTCGAGTGAGGCCATTTAACGAACGGGAGAAGAACCGCAAGGCAAAATGCATTATCCAGATGA ACGGCCAGTCGACGATGATCAAGAATCCAGAGAATGAGAGAGAGGAGCCCAAGAAGTTTGCTTACGACTT CTCTTACTGGTCTCATGATGGGTACAAGGAGAACAAGGAAGGCTACTTAGAACCAACAGACAAGAAATAT GCAGACCAGAAAACAGTCTTCTCAGATCTTGGACAGAGTGTTCTAGCCAATGCCTGGAAAGGCTACAACT GTTGTCTCTTTGCCTATGGACAGACAGGCAGTGGAAAGTCTTACTCTATCGTCGGCTATGGTGCAAATAA GGGTATTGTTCCTGTGGCATGTTCAGAGTTATTCCGAGGGATTGGGGAGAAGAAGAAAAATGCAGACAAG TCAAAGGAAGAAGAATACCAGGTGTTTGTCAGTATGTTGGAGATCTACAACGAGCAGGTCCGTGACCTCC TTATGCCGGCTAGCTTCAAGGTCAAAGGAGGGTTAAAGGTCAGAGAGCATCCGCAGAAAGGTTTCTACGT GGAGCAACAAGCCACATTCCCTGTTATGAGTTATGACGATATCAACAACAAGATCAACGAAGGAACGAGG AATAGGACGATTGCTTCAACAAATATGAACGCAACCAGCAGTCGAGCACACACCATCGTTTCAATACGTT TCATCCAGAAAGGCAGGAACGAGACGGGGAAGAACATGACTAAGACATCTATCATCAATCTAGTAGATTT AGCTGGAAGTGAGAGAGTAGATAGTACTGGAGCGACAGGAGACAGATTAAAAGAAGGAGCAGCAATAAAT CTCTCTCTCTCATCGCTTGGAAACGTCATAAAGGCACTGGCTGATATGGGTGCTGGAAAGAAAGGAATAA GAGTTCCGTACAGAGATTCCAAACTTACAATGTTACTAAAGAACGCCTTAGGAGGAAACAGCAAAACAAT TATGATTGCTGCTATAAGTCCAGCAGATATCAACTTTGATGAAACGTTATCAACTCTCAGATATGCTGAC AGAGCCAAGGCTATCAAGACCAAAGCGGTTGTGAACGAGAGTCCTACAGACAAACTAATCCGAGAGCTGA AGGAGGAGAACGCCAGGCTCCTGAAGGAGCTGCAGGGGAAGGGAGGAGGAGGCAAGGAGGCAGCCATACT CCAGGGAATACCGGAAGACGAAGTGGAGGAGATGAAGAGTGAGCTTGAGAGGCAGCTGCAGCAGAACCAA TCCGAGATGGAATCCATGAAGAAATCCTGGGAGCAGAAACTAAAAGAAGTTCACACGGCGCAGGAGCAAG AATTAGCGAAGGAGAAGAAGAAGCACGAGGAGATGAAGGTCACGCCCCATTTCTGGAACCTTAACGAGGA CCCCGCCCTGACGGGAATGATCATCCACTTCATCAAGNCAGGTCTGACCAAGGTGGGAAGTGATAAGGCT CATCCTGCAGCAGATATGGTGCTCTCGGGTCTCAACATGGAGAAGGAACATGCTGTGATTTCAAACCGAG CCAATACAGTGATCATCAAGCCCTGTCTACCTGCCAAGGTTCTTGTGAATGGTAAACCGCTGACAGACAG GGGAGAGCTACATCATAATGACAGGGTTCTGTTTGGATCCAAGCATCTCTACGTCGTCCACCATCCCCAA GATCTTGCTAAGAATCCTAAGAAAGAGAAAGAAGTATCTGAGGAGAAACCCACCTACAGCAAAGCTCAGG AAGAGATTGCAGCAAACTCTGGCTTTGAGATAAAGAAAGGACCAAACAGATCAAAAGATGAGTTGCTGAT TCAAGAAGATCTTGTTGAGTTGATCCCTCATGTAAGTGAAGCAAATGCAATGAGTGAGGAGCTGAAGAAA AGAGTTCGCTTTGAGATCGCGCTCATATCACCGCAGGCTAGGGGGGCTAAGCATGGCAGGACGGAGGTTT CAATATGCATGAAGAACGTAGACAACGATAATGAGTTCCTCTGGACAAGGAACAAGTTTCTAAATCGCAA GTACCTCATGCAAGAGATGTATCAGAACTATACAGATGGTGACAAGGATTGGGATGTAGAACAGAACAAA GACCCGTTCTGGGAGCCGCCTGAGACGGAGGTCCTCATCGGCTGCGTTCACGTTTACCTTCAGAGCCTGG CATACCTGATCGAGATCGAGGAACTCCTTGGAATCGGTGACTTCCGAGGCATCGAGCAGGGTCTGCTTCA GGTGGACATCCGTCCATGCAAGGCGGATGGCTCTCCTCTCCCCGATGAAGAGTTTGTGGATGAGCCTAAG GAATTGATTGGGAAGAGCACTAACTTCAAGTTCCATGTTTCACATGCAAGAGGTCTACCTGCAAGAATAG CCAAGAGCTTCTGTCGATACAAGTTCTATCAAAACCGAGAACCGGCTCAGTCAGCTGAAGTAGAGGGCAG AAATCCAGAATACAAACATGATAAAATATTCTCAACTACAATCATCACACCAGAGATGCTGAAGTACTTG GAGAATGAATCATTAATCATTGAGGTGTGGGGGCGCCAGAGAGATATGGCATCGCCCGAGAGGAGATCGC TTGGTGGTGATATCAAGAGGAGCACGTCTATCACAAGTGATGAGAAGTACAAACTCAATGTTGAACTGAA CACAGAGAAGAAGAGGGTCCAACGATTGGAAGCAAAATTGCAAAAGATCCAGGAGCTGGTCAGTGAGGCG GTCAAGCACAAGAAGAAAACCCTCGACATAATAGACGTCCAGGAGGTCCTGTACGCCGGCGGTCAGCAGC GCTTCAAGGCCGCGGCCACCGTCATCGGCCTGACCGAACAGATGGGCAAGGTGGGCACACAGGGAAAGGT CTAGCGAGGCAGGAGGGTTCGCGTGCAAGTATACGTGATTTCAGACACTACATTAACCCTAGTGTTAGTA ATATTTCTGGTGTTTTAATTAACCTCGGCTGAATAAAGCAGCTGTTCCTCTTGCAATTGACAATTAACAT TTATATTTATCTTTCACTTTAACAACCTTCACACAAAATTGCATGCTCCTCAATAATTTCGAGAAAAAGT AATTTGTACTGGAAAACAATGGCTTTGCTTATCGTTGCAAGTGGCCAATTTGAAGGAATATTAACCTTAT GTAGGAGGTTTGGTCTTTGTAGAAATGTAACAATCAAGAGAAGGGATGAATAAAAGTATAGAAAAAATGT CAGGCATTTTTAATACCGCATCACAAGAACAAGCCTTAATATCATTTTAATGAAATGTAATTTTATATTT CGACCATATTACGTAGTTGCTCATCACTGTTAAAATACAACTCAGTCAAGATGACTTCCTTGGTAAATAG CATTCAGCTTGTGATGAATGCCCTACCTGATAGATGCAGTATAGACTCTAGCTACGCAGACATGTGCATT ATTTTCCAAAATTGTGCCTTGCTTTCCTCTTGCTTTCTGTTGGTTTCAATCATTTGTTTCATCCGTTTTT CTTGTCCTTTTATTTGTCAAGTTATGCATTCCGAAATTCAGTTAACATTTAGTTTTAGACCATTTCATGG TGTTTTGTTCGACTTGTAGTAATGCAAAAATACAGTCAAACCTGCTTTAGTGACCACCTGTCTACAAAGA TTACATTTTTTGTTTCCCTTGAAAATGGTTTTTCATTGAGACATGTACTAAAGGAACCTGTCTACAAAGA CCACTATTTGTGTTTCCCTTGAGCAGGTGCTATAGACAGGTTCGACTGTACATGAATGAAATCTGATAAT TTTAGCTGATTGACATGAGGCCTAATGAACACATGTCATAGCACCGTGTGTCCCGTCTTCATTGGTCAAT TCAAACACTTCTTCAGATCTCGTTCATTTTTCAATCTATTCAATTTTGATTGATTTGGTAAAGAAAGCAG CCGTGCCAATCGATTGACAGAATCTTGAAACATTGCCCCCCCCCCCACTGTTATGCACAATTATCATGAA ATGTTGTATACCGGTAGTCTTTAATCTGTTCCATTTCATTCTGTTTTGTTTCATTGGCTGGAAGGAACCA TGCAACACCCATGTATTGATATTTCTAATTTCTTCACAGAATTTTGAAATTTGCGCCACCTTAATTAGTA GTTATCATAATTTGTAGAAATTTAAAGGCAGTGTATTCTATTGGTTCCTCTACTCAAGCATCATCAGTTG AAGATGCATTCTGGTGATGATGTATTCTCAAATATGTAATCATTTCTGTTGGTTAAAAATGAGCACTTTT TGATAGATGTTCTTGTTTTAATTTCATTCATGCACTCATTCCAGTTTCTACTGCATTTTAGATTCATTTC CAATCATGATTTCAATCATATTCCATGATTTTTTCCTCTCCTCAAGTATTCACTTGTTTTGTTCTTCTTA CTTCATCATTCCAATCACAAATGTAATAATTCTTTTATATGTGTATGTATACGTACATATTCTACATGCT TGTATTTCTGTGTGTGCTGGAATTTGTTTTTGTTGATGCTATTAAGTAATGTAGTCGTTAATCAAACTAA TGTTTTCCGTCTCTGCTGTAAGCCCTTTGATGGAGATAGATTATCGTATTCACATGTCAATTAAGCTGTC TTTCAATCTACATGCATCTGAATAAATTATATTAGAAGTATGGTTATCCCATCAGCACATTACACATTGA CATACCTGCCAAATTTGGAATATTCCAATTTTTTCATTTTTTCTGAATGACCAAATAATGATAATTATTA TTATTATTATTATTATTATTTTTAAAAGCCAAATTTAGGTTGTTTAACCATGTGCTGGGATTTCGCATAT TGTGTGCATTGAATGGCTGCACAATGTATTTGTTTTTTTGTGTACAGATTTACTGTGTATTGGCCATAAT TGGCATACATGGATGGCCATGGTAAGGCCTTGCGATGGCCTGTTCAATGCACATATACATGTATGCCTGT ACCCCCGCAGGAGCACGGGTCTGCTTACCCAGACCCCCCCCCCCCCCCCCCCTAAGGGTAGAGATTTCTT ATTTTCAAATGTGGGCAGGTATGAGTACAGTGTCTTTATATGGTAGCTGCGCTATATGAATTGATCTTAT AATTATTATTATTATTTTCATTATAGTTATCAATATTATTGTACCGGTAATTATAATTACAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds