Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038196149.1 PREDICTED: Patiria miniata neurogenic protein mastermind-like (LOC119724866), transcript variant X3, mRNA ACATCAATTCTGTTTCTTCTAGTCCCCGCCCCCTCCCCCTATCCATGTTGATGTAGGCGCTACGCTTTCT TTCTTTCGTCACTGTCAAGCATGAGTGCAGGGGGCGCTATGAACAACCAGAACCCGCGACGACGGAAGAG GCCGGAGAAGGGACCAGGGTCCAAGTTCCTTGGCGAGAAGCGCCGACGGGAGCAAGAGACCTACCTGGAA GAGCTGGCGGAGTTGATCAGCGCCAGCCTGAACAACCCAGAGTCCCTGAACATGATGCCTGACAAACGGG CCTTCCTGCAGGACACCGTCAACAAGATCAAACGCATCCGCTTGCAGCAACAGCAGCAAGATCTGGAGCA AGGTAGCGAGGTTCAGCATAGCCATGTCTCTTCTAGCAAGCCCGGAATGCTGTCCAGCGATTCGCTGGGC AACGTTCTCTTGGAGGCACTTGATGGGTTCTTGTTTGTTGTCAACAGTTCGGGAGAAATTGAATTTGTGA CCGAAAACGTGAAGATGTACCTCAACTTTAAGCAGGAGGATCTTATCGGATCGAGCATCAAAAATTTCAT CCACGTCGGAGACCACAATCAGTTTATCAACTGCTTGCTGCCAACCTCCACTCCCGGAATGTGGTCCCAG GACTCCAACTCCCCGACCAGCCGCAACCGGTCGTTCGCCTGCCGCATGCTGACCAAACCAGTTGACGAAG AAGACCCAGCGACCGCCACCCAAGCAGAGCAGCACTACCAGAACCTCAAGTGTTCGGCCATCCTCAAGCC CAAAGAAGACGGCCAGTCTTCCAACTCTACCGAGAGTGACCCACCCTCCCACCTCTTCTGCATCGCACGC CGCGCAGCCATGGACGACAACCCGGCCGCCAACGCCGGCGCCGGCAGCAACCCTAATCCCACCATGATGC TCGGCGGCGGGGAGGAGTTCACAACCCGCTTAGACCTGAAGGCTACCATCATATCGGTGGACCTGTCTCG TCTCAAACCACCACACTACTCCAAGGAGGACCTGGTGGGACAGACGATCTACAAGTTCTGCCACGCTAAC GACCGGACTGAACTGAGGAAACATTTTGATGAAGCCTTGGAGAAGGGAACCAGCTCCAGCCTGATGTTCC GGTTCCTGATCTACACCGATACGTGGGTTTACGTTCAGACGACCAGCAGAGTCTACCGCAATCATCATAG TGGGAAGCCGGAGTGGCTGGTTGCTGTTCACTCTGTCATGAGAGATGATGCATCATCAGGGCAACTGATG AAGCAGGCCAACGTGCCAGGCATGGCATCCACCAGCAGCGGCAGCAACAACACCAACCGCCTCCTGGAGG CCCTGTCCAACAACGGCAGCATCGACCTGAACCGCATCCGTTCCCTCATGCTGAAGCGCCGTCAGCAGAA TGAACAGCAACAACAGCAGCAGCATCTCCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGGGATG GGGTTCAGCGGCAATAGCAAAGCCAGCACCAGCGGGATGGGCAACCCCAATAGCTCCCCAAACAGTGCCA ATGCGCAGGAGGTCTTGGACTCATTAAAGAGATCCTCTCTGTCCACCATACTTCAGGACACCCCTGTCAG GAGCCGCAACAGCAACATGGAGACCTCCAGCGTCTATCCAGTCTCTTACAGCAGTGGCAGCGGTGGCAGC AACGACCGCCACCCAGTCCCGGAGAAAATCCAGCGCATGGAGCGCAGCCCGTCAGACTCTAACATAGCAT CCTCCACGGAGCACACGAGCCGGATGCTTACCGAGCAAAGTGACGACGGGGACGTCTTCCTCCCCGACCA CCAGAGCCACAAAAATGGACGATTTCAGGACAAAGGCCGCCCTAAGGGGAGCGGAGCAAGTGGGGGTAGC AGGGAGGGGGTTGGAGGAGGTCCAGTCGGCAGGGACAGCCCCAATCTGAGTCCTGACACCAACGCAGAGG AGAAAGACACAACCACCACTACTAGCAGCACCTTGGCAAAAAACACGCTCCTGCAGAAGCTTCTTCAGGA TGACCCTGATGACGATAAGAGTGACATGAGCAGTCCAAGCCACTCACCGATGTTCACCGGGCACAAAAAC ACCTCGGACGATGAAAAGCTGGACGAGAAGACCTTTAGCCAACTTCTAAAATCCGATGGCAACACTAGTG GCACCAGTGGTAGTGGCCCAGAGAAGCCATCCAACACTCCAGAGGATGACACCGAGGGGCCGGAGGACGA CAACGAACCCTTGCTGGACTCCGAGGGCAAGCCCCGAACCCGGCGGAAATCCATCGAGCGCGAGAATACC ATCCTCAGCAAGCTCCTAGACGGCGACACCCAGTCAATGTTTGGCAGCGGCAAGCTCCCCCGGGAGCAGC CAGGCTTTGTTTGCAGCAATGTGGTCTCCACAACCACCGTGCTCCAAAAATGTGACATGGACTCAGACAA GAACACCTGCAGCAAGAGTGAGAAGAACGCTGATGGCGGCAGCTCTAACAACAGCAGCGGCGGCGGTGGT GGCAACAGTAAGAAACGCAAGAACGTTTTGTTACAGCAACTCCTGATGGAGGATGTGCCTGCACTCGACA AGTGCCGCAGTGACAGTGAGAGCACCTGTCAGGAAAGCACCACATCCCCAACAGTCACCACCACCAAACC AGGCATGCCTGGCAACCAACAAATCAACCTTGAGGATAGCAGTGCCGACGGCTTTGGACACGATGATGAA GCCGTAGTGCAGCAGCTCTTGCAGAACACCCCCAACCTTCCCGATGATGGCGACGGCAGCCAACCCAACA TGATCATGGACTTCTTGAAGGAGTTCGACAACATCCCTGACACACAAGACCCCTTCTTGCATCATCTCCT TAACGCCCCGGACAGCAGTGTCCAGACCACCTCTCGATACCCACCACAGAGCTCCTCTACCATGGGGGTT CCGACATCCCAGACCAAGGTGCCAATGGGACCTGAGACTATCCCTGGACCAGGACCCCACCAGAGACCTG ACAGTAGCGGCGGGCTCACCAACCCTGCCCTGATGGGCCAAGGTACCGGGCATGAGCCCACAAACTCCAT GCACTCTAGGAAGTCCCCCGGTATGAACTCACAACACCGCCAGCCTGTCAAACGCACCAACTCCAGGGAT TCCTATAATAACGGTGGCAGCGGTGGGATGCACCCTAACGCCGGCAACTTTGGCCGGTTTGCCTCCCCTC AGCCAGACTGTTTCAGCATGGATGGCATTCAGAATGTCATGCCACCGAACCAAACGGCGCCCATGCAGAC ATCCATGTCACAGATTCCACTACCAGGAGCCGGCCAACACAACATATATGACCAAGATCACATGCAGGTA CGGGACATCCTGCCTGGAAATAACGGCGACGAGCAGATACTTTCTGAAGAGGATGCAGACCTCCTGCAGC AGCTGCAGCAGGTCCTGAACAGCACCACGTTTGATCTGGAAGGCAACTTTGATGTGGACCAGCACACCAG CATAAACGGGCTCACAGGACTGGACCCATCGCAGCCGGACAACGGCAACAACATGCTGCAGAGCATGCTG AGCACCCAGACGTCGCAAGCCCCGCACTCCGGAAGCTACCCGACTCCGTCATCGACGAGCATGAGAATGC AGCAGCAGCAACAACAGCACCCCCAACATCAACAACAACAACAACACCCTCAACAACAACAACAACAACA ACAGCCACAACAACAACAGCAACAACAACAACAACATCCTCAACAGCAACAACCACCACAACCACCACCA CCACCACAACAACCACCACAACAACATCAACAGCAACAGCAGCGGAACCGACAGCAACATCAGAAACAGC AACAACAGCAGCAGCATTCGATGTTGGGTATGGGTGGGGCAGGAGGTGGGACTAGGATGGGACAGGGCGG GATGCCAGATATGCAAATGATGGGGGCGGGGCCTAATGCGTCCTCGGGTCCTGGACAGCCACGCTTCCCA CAACAGGTTCATCCACAGCAGCAACAACAGGTCCCGCAACCAATGCAGTATAACCAGATGAGCGCCATGC AGCAGCAGCTGCAGCACCAGTTCCAACAGCAGCAACAGCCGCAGCAGCAACACGGTCCTCTCCCGCCCCA CTCCAACCCGCTGCAGCAACAGCAGCAGCAGCAACAACAGATGGCGTCAGGCCCGGGCAAACCTTCCCAG GGTCCGCCCCAGATGAGCAGCACCACGGCTGGTCCCGGCGTATTCAACCGTCCGCCAGCTAAACTGCGGC AGGCGATACTCATGAGGTCACGGCTGAAGGAACAGCAGTTGCAGCAGCAGCAACAGCAGCTGCAGCATCA GCAGCAACAAAGGCAATGGCAACTCCAGCAACAACAGCAACAGGCAATGCGGCAGCAGCAGCACATGAAC GCAGCCAGCGCCGTCGCAGCCAACCAGCAACTCATGACTGCAAACCAACAGCAGCAACAGCAAGCGCCGT CGATGGGTCCCGGTATACCCGTGGGTGCGGGGAGCCCCGTGGGAATGAATCCCATGCAGCAGACGCAGCA GCGCATGCTGCAACAGAAGCAGCGCATGTTGCTGCATCAGCAGCAACAGCAACAGACTTTCACTGGACCG CAGGTTGAGGGCGGAGTCTTCCCCCCACTGGACACTCAAGCCTTCCAGGACAAACTGAGCGATGTGCTGA ATCCGGCAGCTGGGGTACTCGCTCCTAATGTTAGTATACAGAAATCTCCAGGGCCTTACGGACCACAGAT GCCAGGAATGGGCAACCGTCCCATGCCTGGTGGCAACCAAATGATGGGCGGTGACAGCCGACATCCGATG GGCATGACCCAACCCTTTCCAGGCCAAACTGGTGCCAACCGGGGCGGACCGGAGTTCATGTTTGGCAACC AGATGATGCCTCAGGGGCGGGGCCCAGGTGGGAGTGGATATCAAGGGATGGTTCATGGAGGTGGCAGCAG TGGGACAAACCAGAACGTCTTCACCTTCCAGGACTTTAACAGCCCAGGAGGGATGGGCGGCGGTGGGAGC GTGGGTGGTGGGAATCCGCAACATATGATGCCCAATTCGGGAATGATGGGACCAGGGCAGCACCAGCAAG TCATGGGGATGAACCCCAATATGCCAGGTGGGCACAATAACGTCGGTTTGAACCCAAACATACCACGTCC TAATCTAGCGTCGGTTGGGAACCCGCGGCAGCAGACTCCCGCCCTGACGCGCTCCCTGAGCCTTCCGACA ACAAACTTAGCCGCCGGCGGGAACGGAAACAACCTCAGCCCTGCTAACCGCCACAACCAGTACATGCACC CGCAGCAGCAGCAGCAGCAGCAGCAGCAAAACAATTTCCAAGGGAACAACGCTAACATGAGGGGGAATCA ATTTGGTGGCAGCGGTGGGATGCAGCCCCACTTCCCTGGAAACTCTATGACCATGCAGCCGGGACAGATG GGCGGCAGTGCCCCCATGTTCTCCTCCCCGTCCTCTGGGACCCAGATGCGCTGGAGTGGCCCCAACGGTG GGGGGATGCAGAGGGGGGCCATGCCCCCACACCAGGGGCAGATGTTCCCCGGTTCGGCTGGGGGTGGGGC AGGTGGGATGCCCCAGTCTGCGGAGATGATGCGAGGGATGGGCAATACGGGAAGCAGCGGGACGCAGGAT TTGCAGAGCATGATGAATAGAAGGCTTAGGAGAGGGGACAGTCTGCCAGCTAACCCAAACATGATGGCGA CCCCGCCAAAGTACCCTCTCCAGGGCTCCCTCAACTCTAACATCCCCGTCCCGTCCAACCTTGCCGGCCA GAACACAATGCCCATGACCCAACAACAACAACAACAGCAGCAGCAGCAACAGCAGCAGCAAGCATCGGGA GATGCCGCCAATGCTACCAACTCCTACCTGACCCAACCCAGTAGCACTAGCAACAGTGGGGGTAGTGGCA GTAACACCAACAGCAGTGGCAGCGGCGGCGGCAACACCAACAAGAACAGGTCGACGCCGGGTGGCAACCC GTCCAACTTAGACATGTTGAGCCTGTCGATGGATATGTTTGAACCAGAATTCTTCAAGCCTGACAATCCG AACCCCATCGCCAGCTCCACCACCAACCCGACCAGCCAGCCGGACAGCACCAGTACGACGACGTCCCGCA GCAACGGCGGCAATCCTCCTGTTAATGTTCCCGACCCCCTGAAACCTTACGCCGAGATGCAGTCCAATGA AGAGGCTAAGCTAAGATACCAGGAATTTTACAAGATTTCCGGCGCACAGACCGCGCCCGATGCCAACACC CGAGTGACCAACCTTTTCCGGAATCAGCTGACAGGACAGCCCCTAACCCCAGGGGCTGGTGGGAGAGGAG GGGGAGGGGCTCCAGGGATGGGCGGACAGCAGATGCAACAGTCAGGCGGTGGCAGCGGTGGGATGGTCCC GCCCCAGCAGCAACAGCAGCAGTATGGAAATGAAGACCAGAACCAGCAGGAAGGAGGAGACGGCGATGGT AAATCCAACAGCCTCCTGCAGAAGCTGCTACTCGAGTAAACAAAGTTAGTCATTCAAATTAGTTTTTTTC TTCAACAAGGCTTTGAAAAAAATTTAAAGATAAAGATTTTTGTAGTTTGGCCTGACTAATGTGTCATCGA GTATGGATAACATAATTTTTCGAAAAAGAATTGTACAACTGGCTTTTCGTTCAATATGCTTCCTTTGTTT CGCCCACTGTGTACATAATCATTTCGTCGTACTCTAGGCAGACGATAGTTTAAAAAGCGTTTACGTTAAC ACAGAATTTAAAATTAAAAATCTACTTTGATTGTGTTCTATTAATACCGAGATGTATATTATTGTTTGTT AAATAATGGTATATATGAAGTGTGGTAGATTGTGCCAACTGAATCCTATTTCCGATACGTTGTCCACTCA CTAAATATTAACTGCTGTATAGTGTACAGAAGGAATTAAAAAACAAAAAACAAGAACAGACGAGACATGA AACGGAACGATTTGTACATAAATGTGGAATAAATGTTGATTTTAAGGGAGTTTGGGTTATGTTTTTGGAG GAAATACCATCTCGGCAAATCTAGTGTTGTTTTCTATATGTACACATGTAGATTAAAACCGGAACCGTCT GGTTAAGTCCAGTCCGAGACTTTAATAGTTCAGCACTAAAAGCACATTCAGTTTTGTATGTAGGACACTT GGTAGTCTGTTTTGTTCTGAGAACCGGTTTGAACTGGTCCTATTAACCAGTTGACTCTTGTCACATCCAG TAAGAACCGGTTCTGATACAACCAGTTCAAACTGGACTCAACCGGGTTCCGTTCAGCATGCTATGTATAT AAATATAAATATACATACATCTATTATGGTTTCATGGAATGTGGATCAATTTAAAAAGAATTTGAGAAAT GCGGGGAAAAAACCAACATTTTCTTGCTGATTTGCGGGGTTTAGAATTTGAAAATTTATAAAAATCTGTT TCCAGCACAAAAAAATGTTAAGAGGGCTGACAAGACATGATATGTGCCTTGCACTTTTAGACGAGTACAT TTAACATGTTTTAAGGAGCAAAAAAAGTCGTAAGTGTTAAAAAAAAAAGAAGACTTTTTTGATAACCCAA TCAAAGGTTTATGTATTTTTATGACCAAGTGAGCAAAGCTCATTCCGTGATCAAAACATATTTTCCATTC TTCTCTTTCAGCTTTTAGACATTTTCTTTCCCCTTTTTGGGTTTTGTTTTCCATTTAAAATCTCCCATAA GTTCACCAGTCCTATATTTTGTAAATCTTTTGGGACGAAAAGTGAAAATCACATTTGCTTTATTTGAAAA ATAATTACGAAGTGTTAATCTTTTTTCAGATTTCTTTTCTTTTGCCTTTATTCTTCAATTCTGAACCCAC GAAATCCGCCAAATCAACTTGAAATTCCCCATTTCGAAGAAAATTACAATCAGACAAGCTGACGAATCTT AAATGTTATGAGCATTTTGTCCCAAATTTTAGATGCCGTTTATTGTTTTTGACATTAAATCAAATACATT GTCACAGTGCCTGAAGAAGACATGAAAATAGAAAAAAAAAACATGAAAATTTAACCGGTGTTTAAAATTT AAAAAACGTTTAATTGAGAAAATCTATTTATACTTTTCTGATACAACTCGATTGTAATTTATTATTTGAA ACAGTTTTTTTTTAAAGTGTTTAGAAATATGATGAGTCTTTGTTAGAATGTTTTTATGTACAACTATTGA AATTGTGTGGTTAGGTTGTGTTATTGACATGACAACCGATTTTAATTATCAGTTTTTCCCAGCGATTTTG AGATAAAATATTACCCAGATGAAAGAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds