Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT103097.1 TSA: Strongylocentrotus purpuratus WHL22.415889.0 mRNA sequence GTTTCCCCCTGATCATCTTTGCTCATCACGAAGGAAGAAACAAACCACATCAACAAGATGAAGGTCACTT TCGTTGCCACTGTCTTTGTTAGCATTTCCATGGCACTGTATTCATCAGCCAACCCCATCGATTTGGGATG CGGCACCGCAAGAAACGTCATCGACTGCTACCTGTCACAGCTCTGTCCTCACTTCAAGCCCGAGGACGTC CTCACCTGCGACAAGGAGTTGATGATGAGCGCGTCGTTGATGTCGATGACGAGTGACGTCATGGTGTCGC ATTATCTAAGAGAAGCACACAAGGATAAATTCTGTGACGCGGATGGGCAGCGATTCGGCTCAGCTTGCAA TGTGCTCGATCACGTATGCTTTGGTACAGGTACATTTGACATCACCTACTGCGATGAAACTAATCTACGA TTCCGTCGCAGTGGCTCCTTCTCTGGTAGCGATTCTGGATCTAATTCTGGATCTAATTCTGGTCATGTAC ACATAGTCCACCAACCACCTGCAACCAAGCCACCTACAACCAAGGCAGCAATAACAGAAAAAGCAACAAC AGCAACTGATTGTGACACATCCGACGAAGACGCCACCACCACGGCCGCCACATCTGAGGATGACACTACC ACTCCCACAACACCTACAACACAAACGACTCCAACCACACCAACAACACCAACGACTCCAACCACACCAA CAACGCCAACCACTCCTACAACACCAACCACTCCTACAACACCAACCACTCCTACAACGCCAACAACTCC AACAACTCCGACAACACCAACAACCCCCACTACACCTACAACTCCAACCACACCTACTACTCCTACCACA CCTACAACACCCACTACACCTACGACTCCTGCAACTGAACCAACTGAACCAACAACATAGCTAGAGAGTA TACCTTTTGCATAATATACGGCCTCTTAACTTCAACACCCTTCCTCATTACTCTATTTTAAAAATAAGAA TATTGAATCTACAGATTTTTGTTCACACTGCATAATTTAACGATATAAAATAACTTTGAAATATGTATAT ATATAATAATTATGGGCATGTTGTTCTTTGCATGTATTTCTTGGCAATCGCATGTTTGCCTTTTGAAATG TTATTTAAGTGAAATGATTTACTTGTTTAATGATATTAAATAACTTTGAAATATTGAACACGTGAAATAT GTACAGTATGTGCATGTGTTTCTTGGCAATCACATGTTTGTCTTTTGAATTATTTAAAGGTACTATGTCC CATGTGCAGGCCAAACTAAGGAAAAGGTTAAATTCCAACGGCATTTGAAAAATAATCCTAATTAAGGACT TCCCTTTAAAAAAAAAAGGGGGGGGGGGGGCTTGAAATTTCTTTAAGTGGGAAAATAACGACTATTAATT TGAATATTAGGACACTACTGACGTTTAAATTTCACAGAAAGGACATACATGACATATTCATAATTCCTGC AAAGTTCTACATAACTTGATGTTGGCTGCAAAAGGGACATATTATCTTTACGTGAAGTGATATAGTTATG TTTAAAAGCTCTCAGGTGTAATGAATTGACCTTTTAACATATTTGTCTTCATAGACTATTATTTTTCTTT GATATTTATTATCATCCAATTCTTGTGGATTATTGAGAGATGCTTTTGACTGCAATAAAGTTATTAAATT TGAAATGTATACACTAATGATTGTATGGTTCATTTTTTCCCTGCAGTTTTACATCAAAATGCTTGATCGT GTTTAAAGAGGTTGAGTTCTGGGATCAAAAGGTGAAAAATATTTTGTGAACGTTATCATTGTTTTTATGC AAGTGTGGAAGAACATCAGATAACAAATGTTCCCTGAAAAGCATGGCTCTTCAAATGCTTTCATATTCTA AATATGGCATGTAACAACATACAAATTACATATACATCTTTCTGTGTACAGTGCTTGTAGCTTTACCAAG ACTGGGCCGAATTTCTCATCATTTTGATGATTCCAGAACCTTGCAGTACACACCAATACTTATATGCTAG ATGAAGAACCTTTGTTGACTCGTTCCACACCGTTTCTTTCACAATGCAATTGCATGACCAGAACTCAACT TTATCTTTAATTGTAACTCTCCTCTTTGTGTGAGTAGCAATTTGTGTTGGTGTGAGGTGTATACTAGAAA AAAGTAAATTGGTCTCCCTTTATGTAGGCCTCCAATCAAACCATTATAACATTTTACTTTAACCCCGCTA TTTATACATAGATCGACAATGAACTTTAAAAGGGAGTCACATTAAAAGAATACTTACATACTTCTAAATA AAGTTTAATATGGTTCATACCATTCAAACTTACATATTTCAGCATGATATTGCAATATGTACAGCATATT TTCACAGGTTTGTGTTACCAAAAATGATTTTTCTGGATATACATGTAGATATATAGTGAAAGCAAAAATA CAGTTAATCTATAACTTAGATCATCATAAATTGATTCTACTCCTGTATGTTCACATGTACATGTATATAT CTACTCCATACAAGACACACGGTTATATATTAGGATCATGCAAATTCAAGTCTATTGAAGAGTTGTGAAA AAGAAATTATGTATTTGCCATGACAAGAAGTAAGAGTTATTTGTTTAACACTGTTAATTGGAAAGTACAG TCAAAACATACTTGTTCCTTTAAACATGTACACAATACAGACTCTGCATTGTGTACACGTTTAAAGGTAC AAAGTATGTTTTGACTGTACTTACAGAATACTGTCTATTACTGGTGCAATTAGATCAGTTCTTTAAAAAA CTAGAAAAAAAATTGACTCTGTGCAGTCGAAAATATGCCTCATGATCAGAATATCTTAGCACATTTAAAT TGACCTGTGATCTTTGACTTCTTTACCATAAAATCCAATCAGGTGATCTTTACAAGGTCATACATACTCT CACCAAATTTAACTATGATACCTCAATTCGTTCTTAAGTTATCGCGTTCACAAGATTAATTACGGACGGA CGGACAACCCGCAAATATAATGCCTCTGGTACTAATGTGTGGCGGAGGCATAACAAAAAAAGGGGGGGGG GAGGCATTTTCTTGTATGGTCTCACCCATGTTAACAGAAAACTTTCTGCTTGTGGCAACCCTGGAAGTAG CATCACCCTGGCCTAGGCATAGATTCATCACTGAGCAGGGCTTCTATATCAAAATACACAATCTTTGCAT TGATGAAGTACATATCAGTATAATACAGTATAGCAATTAACACATTTAACATAACATAAGATGAAAAATA TATATTTATATTATTATATACATGATTAAAACATATACATGTTGTTTGATAAATTCTGGCAAGATGTAGC AAACCAATACATATTTACAGTCAGTTAATCCTGAAATCAAGAAAATTGAATAAAACAGAAATATTAGAAA TGGTTAAATTGATGGATATTTTAGCCGTCTCTGAACCGATTTTGATCAAACAAAGATGATTTTGTCATTT AAATTGTATGTTCTTTCAAATTTGACACTCGGTTTATCTCACAAAAAATATTTTGTGGAGTGCCCTCTGC AACAAAACTCAACTATACCTTTAAGAACCTTGAAGATCATGAAACAAAGTAACAATTTGATAACTTCCTT TGCAAGCTAGTTTCATGGTGCATTGCACACAAAATATCTTTCTTCTTGTTTGTTGATAATTGCATTTAAA CATAAATGTTTTCAAAGATACACCTAAGGCACAAGTAGGAGATATAACTTTCTTCAGAGAGAATCTGTCA AATTTTGTGATGATTAAAGGAAAGTGGCTCACAAACGACATCACGGTGTTGTCAATTTGTACATTCATCA TCAACACTGCAATTTCTCTTTAAAGAACAAAAATTGCTCATCTTTTATAAGATTTTTTTCCTGAAGATTC AATGGTCAGCTATTTCTCTCACATATTAGCTGTATTCAAACCCATCTGAAGCTAGGATGGACTTTTAATA AAGGACATCAAACCAGCTAGAGTGGAATTAATACTTTAAAAAGAGTGTTATCACTTTCTCATACCCCTAT TTGTTTATATACACATGTATATATAGCACACATATGCTGAGTGAAGGAAAAAGCACAAAAGAAAAATATG ATAGACTTGAGGCACAAACTTAGATCAATTGCAACCATACAGCATACATTTTATAGTATATATCGCAACA AATTGATTTCATTCCCCAATAAAACATTTGGATGACAGCTTCTGAATTAACATTTTGTATAAGAATGAAT GATTGTCTTTTCTATAAATCAAGACATTACTTAATGAAGTGTATAAGCACATACTGCAAGTTAGGTCAGG ATTCTGATACATATCATGCTCCCTAACAAACATTTTAAAAATAATTATACAAGTTGTGACAGATTTATTT TAAACAAAATACAGTTTCAGTACTGCTAAAGTTCATTGTATTTATCAAGATGGTTATAATAAAAAGAATA TTTGATACAGATGAATCTGTTGATCATTATTTTGGGCAAAATGATGTAATGTGCAATGTTATGTTGGCAT AACAATGAAAAAACAAACCCTAATACATGCAATCACATTTTTTACACAAAAGAGGTACAAATCCTGTTAG TCTATTAGACTTCCCTTGCTAACCTTAAAGGTAGGTTAGCAAGGGAAGTGATGAAGCATAGCAAGGGAAG TGATGCTGTCTTAATGTTATTGCAAAATGCACATGACATATATTTTTCTGAGAGCTTTGCTTTTTGGATT TGTTGTTGTTTTTTGCTTGACAATGGAGGATCAAACCATGTGACATGCAGTAATATCCTTTAGGTGGTCA AAGGTTAGCAAGGGAAGTGATGATGTCACACAGCTACTGAGAACTGCATGGAAATCATGACAGGGTTTTT GACAGAAGTGTAGGGTACTCATTCTGATGTATGATAATGTCTCTTGGAACAAACTTAAACTTGGCTTCAG AGTTCAAATAAGCACTTCAAGTGAAAGGATACATTTTTCAAAATTAGAATTACCATTTACCAAAGATTTG ACCAGTCATCAAACTAATTCACTAAGTTATTGCTTAATCAAATATAGGATTTCATAATCCTTTTTTTTTT CCTGACATCACAGTGAGAGAACATTTCTTGATAAAGAAATGGATATCCTCAATGGGCAAATGCCAAGAAA CTTATAACTTTTTTTTGAGGTTAATGAGGCATAACTGACACATAACCATGCATCATTGGGAATAGTATTC TGAAGTATAAGCCTCCAGTTATATGTGATCTTATACATTGACTCAATGCTACATGCTATACACACATACA CACAGTTAATGTACACTGTGGTGTGTGGGCTCTTCTATACCCAATATAACCAGGCATGCTGGATTGAAAC CTAACTCTGATGTTTCTCTATGGTGTCTTCATGTCAGTACTAATCATACAGCTAACAACCCCACGTTATA TGGTGGCAGCGGTGGGATGAATGACCTAAATGACCTATTATTAACCCATTGTCTACTGGAACCGGGTGGT CCCTGTGTAAAGCCTATGGGAATGAGATAATTCAGTATAGTCAACAGGTTAAATTGAAGACTAGTTGTCT ACAATTTTCCATTTGGTCTTGATCTCTAGGATGACATCCTGGCGATTGAGGTTGGGTTGTTCGAGGTTGC TGATCAGGTTCCCCAGGGTAGCGTTCCCAGACTTACCCCAGTCCTCGAGGAGATGGCCGCAGGGGTCATA GTAATACTGGTGCGGTGATAGAGCCTCTTCAAAGAGCTTCAAATCAGAGGTGGAGTAACCTAGTTGACCT GTGTGAAGGGATGGGAATATGAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds