Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030994041.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100890779 (LOC100890779), mRNA TTCCTCTTCTTTTTAAAGAAAGTGCTCTTTTGTTGGTGCACCCCTAATCTGAAAGACTCTCCGCTACCCC TGTAATGCAACATCGAAATCCGACACGAATACTTATCTGTAAAGTTTATTCATGCGAGCGAGGTATTGTC AACATTTCTATTTATTTTTCTCGACCTGGTCACGTTCAACTAGACTTGTTGACGCTGTATGTTATTACTT CCTCGTAGGCTGCTTCATGTCGGTCTATTCGAAACAGGGAGTCGACTTTTGATAACTGTCATACTTACTT AACTAAAGCAGGTTACATCGCATTTGGAATGAGGAGATTTCAAAGCAAGCGAAATCGGGCACTTAAACAT TTGGCTGGAATTGTGATTCGAAATACTCCTGTTTAAGTTTTCTTCGTTCTCACAAGTTATACCAGTTTGA GCCATTTATAGAACGTCCTACGCTTTGAACAGGGTTTTAGTACACGAAATATTACCACGGACAGCAACCT TAGAAATCCTAACCGATTGTGTATAGTTCATTTATTACTCAACTAAATTTACATCTAAACAACTCATCCT GTACCTAAAGTAGGCAGTAAATGACGTCATTGACCTGCACTTAAAGGCCTACTGATTGATTATACAAATA CAAACAATGGAGCCTTTACCATATTTACAGGAAGTCGAGATGATTCATCTTTCCAGAGACATACCTCATA CTAGTTACTCAGAACTGTGCATCGCCCTGGGGTACTCCCATAATCGAAATCAATCAATTCTCTCAACTCA TCTAAAAGATTACAATGAGGCTATGAAGGATATCCTGATCAAGTGGAATACTAAACAAGCAGATACAAGC CAATCACGATCGATCCTGGCGAGGAAGCTTCATGATGTGGAGCTTGGTGGATTGGGGAAAAAATTGTCCA AAGGTGAATATCTCTCAAAGCAGCAGGACCCACATGAACAAGTCGATGCGACTCCACTGCACAGTAGCTC AGATATCTACAGTAAGAAGATCTCGCCATCATTGACTGTTCAGCGATGTCGCGAAAAGTTGGAGAATAAG TACCTTAATCAATTGTGCAAAATTCAAATGAAACCGTGGGATCAAAGTGATTATGCTGAGTTCAAAGATA TGCACACGGTCGTCACAATGGTGAAGAAGGACGGTCGTGGAAAAGACAAGAAAATGAAGGAAAAACTCCA GGGTTCTGTTGCTGAAATATTTTCGAAGAAAGTAAACGGAAGACTGCCAGCTCGAATCCTCATTTCGGCC CCAGCTGGACGAGGGAAGACTACGGCTGTTGCTAAGATGGCTTACGACTGGGTTCACAGAGAAAAGGGGT CAGCATTAGAACTACTGCCACTTCTGTTTGTTGTGAAATTCCGAAACACAAGTCAGCGTACATCGATCGG AGAAGCAATTAAATCCCAGCTTTTGAGTGATGTTGATGATCTCACACCAGAGGGTCTGGAGAGTTTCATT AGAGAGAATCAGGGAATCTGTCACATCATACTAGACGGACTAGATGAGTATGCCGGTATTTCTTCTTCAA ACCGAAGCTTAGAGAGCAATATGGTCAAAGTCATCCGCTGGGAGGAATTTCCAGAGTGTCGGGTCCTTGT AACAACACGCCCTCACCTTGAGAACTTCTTCAATCAAAATGATCTTTCAACGGTATACACAAAGATGTGG ATCGAAGGATTCTCGCAAGAGAGCTCACGTGAGTACATCAACAAGTTCTTTGCTTCGACATCGAGTCCTG ATAGTGGGCATGGTCTGAAGGTTTACCTTGATGGCCAACCACTTATTGATGAACTTGCTAAAACACCTCT ATTTTGTCTCATGGTCTGTCATTTATGGAGCGACGGGCGTTTGAACTCTGAAACTGCAACTCAAACAGAA TTATTAGACAGCGTGAATGATTTTCTGATGCACCATGCCAATGCCCGAGCAACATCAACAGACAGCATAA CAGAAGAAGAACTAATCGAAATCATTCGTAAACTGGGTAAGGTTGCTCTAGCTGGTCTACTCGACGACTC TAAAAAACTAGTCTTCACGCCCCATGATTTCCGAAGAGTTCCCTCTATCCTTGATAGGGCATGCGATCTT GGAATAGTATCCAAGATATCTGTTATAACCACACGGCTCCAACGATCTGACAAGAACACTGCCATAACCA TTGAGTTTTATCACAAACTCGCTCAAGAACACTCGGCTGGGAAATACCTTGCTGCTAAAGCTAAATCGAG AAAGCGTCAATGGCCCTGGCAGACTTCCAATTTAGACAGAGTAATGCTCAAGATCAACGCAAACATCGGC GACTATGAAAATCTCATCCGATTCGCGGCTGGCACGGATAACAGCCTCTGTATACGAATAATGGAGGCGC TCCTTTCAAACAGTTATTTGGATGAGAGCGAACGATATCGCATTATTCTTGACTGCTCATCAGAGACCAA GGGTACTGAAGAAAATGTGTCTTCGTTTGTTGAAAGATGCGTAACTGCACAGAGTATTGTTCTAAAGTCA CCGACTGTCTACACCGTCGTTGGGATGCAAAATCTTCCACAGCAAATGAAACATGAGGTAAGGACTATAA CGTTCGAGGGATCTACTCTAACTACCGACGTGACGAGTGGACTATGGTCATGCCTCGGATCATTTTCGAT GCTACATACTCTCACCATCTCGGACTCCTCTCTTGTTTTCCCCCCATCTGCTCCGGAGCTTCCATCCGTC ACAAAGCTAGCAGCCGAGAGAGTGACGTCACAAAGCTATGAAGGTCTGATCTCATCGCTTCCTGGCTTGA GAGATATCGATATCACTATCGATGATGCAGAGAGAGACATATCTCAGATCACGGCTGGTCTTCGTCGGAC CGGAGGACAGCAGCTCACACGCATCGAGCTAACAGCACCATCATCACTCCCATCAGAGAAAAACAGAGTA TCGAGAGAGACGGTGAGAGGACTGGGTCTTCTGATCAGAGATCAAACCAAGGAACTGCAGCGGCTTTGTC TGTCCGGAGTGAAGGGCTTGGGCGAAGAAGACTTGGTTGAACTTGTCGAGTCGTCAACTTTGAAAGCATT GGATAGTCTGCATTTACAATTTCTTGATGGTAGATGTTTCGAATACGATCGAGAATCGGGTTTCCAGGTA AAGAAATGTCGGCTATCTACTGAGATGACTGCCAGAATGTGGTCCTGTCTCAGATCCTTCACCTCTCTGA ACCATCTCATCATCTCAGACTCCTCTCTCAGTTTCCCTCCATTTCCTCCTGAGCTTCAATCAGTCACAAA GCTATCAGCTGAGAGAGTGACGTCACAAAGCTATGAAGGTCTGCTCTCATCGATACCTAGAGTTAGAGAT ATTGATGTCTCTATCGATGTTGCAGAGACGAGCAACACCATCGCATCCAGGCCTATGAATCAGACTAGTG CTAGGGATGAACAGTTCGTTGTTCATATTAGACTACACGCCTTGCCAGCACTCGGCGCAGACAGGAAGAT TAAATCAGGAGAGTCAATTGGAGGGCTTAGTCTTCTATTTGAAGACCAAACCGAAAACCAACAGCGGCTG CATGTGTCCGGGGGGAGGGGCAGAGACGAAGAAGCCTTGGTGGACCTGTTTGTCAAGACTAAACAACTAA CGTACTTGAATTTGGGTGGAGGTGAATCTGTGAACAAAAAGAACACCGTTCAGAATACTAGGCTTCAGAT AGAGCAATGCCAGCTATCTACTGAGATGACAGAAAAGTTGTTGTCCTGCTTCAAATCCTTCACCTCACTG AACCATCTCACCATCTCAGACTCCTCTCTCAGTTTCCCCCCATCTCCTCCTGAGCTTCCATCCGTCACAA AGCTATCAGCCGAGAGAGTGACGTCACAAAGCTATACAGGTCTGCTCTCATCGCTTCACGGCTTGGAAGA GGTCGATATCTCTATCGGAGATGCAAGGACAGAAGACATATCTCAGATCCAGACTAGTCTAAGTCGACTT CTGACAGGACAGGATCTCACAAGCATCGACCTTTCTTCTCTCCAATCAGAGGAGAATGTATCAAGCATTT CGAGAATGACGATGAGAGGACTGGGTCTTCTTATCACAAAATCTCAGGCGATATTGTCCGGAGTTGTTTT CGGACTCGAGGATGCAGTGATCGATCTTGTCCAGTCTTCAACGCGTTTAATGTCAGCTAGTCTGTATGTT GAAGAGTTTTCTGGGTCGCTAAACTCAGCTAAACATGTATCAAATATTGACATGTTGACTATAAAGGACT GCCAGCTACCTACCGAGATGACCGAGAAGTTGTGGTCCTGTCTCAGATCCTTCACCTCACTGAACCATCT CACCATCTCAGACTCCTCTCTCAATTTCCCTCCATCTCCTCATGAGCTTCCATCCGTCACAGAGCTATCA GCCGAGAGAATCACGGCTGGTCTTCGTCGGACCGGAGGACAGCAGCTCACACACATCACCCTTGCAGCAC CGTCATCACTCCCATCAGAGAAGCAGAGTGTATCGAACGAGACGATGAGAGGACTGGGTCTTCTGATCAG AGAACAAACCAAGAACCTGCAGTGGCTTTGTCTATCCAGAGTGAAGGGCACGGACCAGGGAGACTTGGTT GAACTCGTCGAGTGTTGCAAACATGTGGAGACGATGAATCATCTAATGCTTCTTGGCTGTGGGACAAAGT CAGACGGTAGACTAAGACATCACATCACTGGTCTTAACAAGTCAGAGAAGTCACTCAGGGTGATTGCCTT GCATCTTCCATCTGTCACAGAGCTATCAGCTGAGAGTGTGACGTCACAAAGCTATGAAGGTCTGCTTTCA ACGCTCCCCAGCCTAAGAGATATCGATATCACTTTCGATGATGCAGAGAGAGACATACCTCAGATCACGG CTGGTCTTCGTCGGACCGGAGGACAGCAGCTCACACGCATCGACCTTACAGCACCGCACTCACTCCCATC AGAGAAGAAGAGTGTATCGAGAGAGACGATGAGAGGACTGGGTCGTCTGATCAGAGAACAAACCAAGAAC CTACAGTGGCTGCGTCTAACCAGAGTGAAGGGCTCGGACGAGGGAGACTTGGTTGAACTCGTGGAGTGTT GCAAACATGTGGAGACGATGAATCATCTAATGCTTCTTGGCTGTGGGACAAAGTCAGACGGTAGACTAAG ACTTCACATCACTGGTCTTAACAAGTTAAATAAGTCACTCAGGGTGATTGCCTTGCATATCACGGCTGGT CTTCGTCGGACCGGAGGACATCAGCTCACACGCATCAAGCTTACAGCACCGCCATCACTCCCATCCGAGA AGCAGAGTGTATCGAGAGAGACGATGAGAGGACTGGGTCTTCTGATCAGAGAACAAACCAAGAACCTGCA GTGGCTTTGTCTATCCAGAGTAAAGGGCACGGACGAGGGAGACTTGGTTGAACTCGTCGAGTGTTGCAAA CATGTGGAGACGATGAATCATGTAATGTGA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds