Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030982032.1 PREDICTED: Strongylocentrotus purpuratus cell wall protein DAN4-like (LOC105436562), mRNA GTAATTTCCGAAAATTAATGGTTGACTTCCAAGCTGAATTTTTTTTGAACCGGAGAAACCGAAACAGAAA TTCCACTCCAGCTCCCAATCATGGCGCGTTTTTCATGGAAACTGTCGTTAGTCTTTCTGGTGCTAGCTTC AACAACCGCTGCAGCTCCAACAGCCACTACAGCTCCAACAACCACTGCAGCTCCAACAACCACTGCAGCT CCAACAACCACTGCAGCTCCAACAACCACTGCAGCTCCAACAACCACTGCAGCTCCAACAACCACTGCAG CTCCAACAACCACTGCAGCTCCAACAACCACTGCAGCTCCAACAACCACTGCAGCTCCAAAAACCACTGT AGCTCCAACAACCGCTGCAGCTACAACAACCACTGCAGCTCCAACAACTACAACTACAAGTAACATGACC ACAGCAGCAAGCAACATGACTACCACACCCAGTAACATGACTACCACACCCAGCAACATGACTACCACAC CCAGTAACATGACTACCGCACCCAGCAACATGACTACCACACCCAGCAACATGACTACCGCTCCCAGTAA CATGACTACCGCACCCAGTAACATGACTACCTCTCCCAGCAACATGACCACCACATCTACAACACTACCA GTGACAACATCTGCCCCTGAACCCCGATGGAAAGTGAAGAACAAAGCCGGAAAGCTGTGTATGCTGATGG ACTTTGATGGAACAATAACAGACATTGAACACGCCAACCAAGTAAAGATACCTTCGTCTGCTTCCATTGC AAAGTCCTCTTGTGAGTCAGCCGATTCCTCGCAGTTTGTCGTCGAATTTTCAGCAGAGGAAACTACTTTT TGGCAGCTGATTCTGAACTTTACGACAGCAAAGAACTCTTACAAGCTGAGCAAAATGACAGTGAATTTGT ATCTAGATTCATCGCTAGTAACATATGGTTTCGATGAGAAGGAGTTCCTCACTGTTCCGTTAGGTGACTT CTACAAGTGTGACTCCCTCAACGCTACCTTTGACTCGTTCGCAGTGAACCTGACCACGCCTACTTTCCAG CCGTTTGTCCAGCAAACCAAGGGAAAGGACAACTTGGGCAAAGAATGCCAATGTACGAACGGATCTTCAG TAAACCATACCAATATCATCATTGGAATCGTCATCGCGATCATCGTGCTTGCCGCCGCCGTCGGAGTGAC GTACTACGTGGTGAAACGACGCGGAACGCCCTCCGACCCTCCTTATGCTAGGGTTAATTGAGAGACCAGA GGAGTCGCTCAAACTACTGGATGTTTTTTTAATATTATCCCCAAGCTTTGTACGATACAGTCAATCTGCT TTAAAGATAAAAGTGAGGTGTGGTTATCCGATTCTCCCCATCGCATGCGGCTTTCTCAATTCTAACACTT GCGCACTCTATTTTGTGACATACAAATCGGCCAATTTTCTGGGAAGGGTACTTTGGGGTTAATTGCCCCT GAACACCTTTGTTGACAATATTTTGATAGAAACGAAACGCAGCATTGACATTCTTTGAAACTAGTAATGA GGATGAAATCTTGTTTAAACTCTGTTGAAAAAATACCAATAATAAACACGTGCTATGGTAAACAACCTTA GAAATTCAAAAGAAAAAAACGCAAATCCCTTCAGTTGATATGAAAATCATTTTCAGAGTATATTGTTTAC ACCAACAAAATAGTACCACTAGTAAAACTGAAATGAAATAAAGAAGAGAGATATATTAGAGAATAGATAT ATTAGAGAATATGTTAAAAAGTCATTTCCTGAACTTTCATGTTACACCTTTTTTTCATTACATGTTGCTA CTGCTATTGTAATTTTAATATTTTCATATCTGCTATATCTTTTTACAATGTATCCATTATATCTAGTATG ATTTTAAAGGTATTTGCAATTCAGCAATTCAACAGTGATGTGTTTTTTTAATAAACCTTTTTGAATAAAA TTATTAAAAACCATTAGAATGCTTGCTTATGCACATATTTGAAGTTTATGTTTCATGCATTGTTTACTCG GATTTTTGACATGGATTGTTATAAAGAAAACAGGTTTGTTATTGTTTTGTTTTTAATTGAAAAGTTTGAT TGATAGTGCTTTATGAGACATTTACATTAAAAGAGAAATAATATTTTAACTTGCTTTTGTAGTTTCTTAA TACTCTTTGCATGTGATTTGTCTGTATTTGTAAATATGTATGTTTGAAATCAATTTATCGTGACGTGAGA ATAATTAAACTCAGTCTTTCTCATCTATTTTTCATAAATGTGAATATGAATTTCTGTCTTTTCTGAGTGG TACAATACCTGCTTGATGCCTCAACTATTTCTGAAGGTCTTTCATCTGAATACATTTCATTGCCTTGAAA GAAATCGTCTTGTATATAAGAATTTAGTGATTTTTGATAGGCCATTTCTATTCAACACTGGAAACGATAG AATTGGGATGACATTCTATTCAGAATTTCATAAATGCAAAGAATGCATAGCTACAGTGGGTATTGTCATC AAGAGTTTGGCCGACTTGGTTTCAGTTCCTCACAACATGTCATTAATGTAGTATTTTGTACTTTGCTTGC CTAACTAATCAGGATTCGCCACATTTTGCCCAGTTCGAATCAGGTTGGTAAATGATAGAATTAGGATGAT ATTCTATTCAGAATTTCATAAATGCAAAGAATGCATAGCTACAGTGGGTATTGTCATCAAGAGTTTGGCC GACTTGGTTTCAGTTCCTCACAACATGTCATTAATGTAGTATTTTGTATTTTGCTTGCCCAACTAATCAG GATTCGCCACATTGTGCCCAGTTCGAATCAGGTTGGTAAACCCTACTAATGAATTGCTCTGTTGCAGGCT TGCAGCCATTTATTCATCAAACATAGAATAATAACTTGATGGTGCAATGGATGAGAGAGCTTTCAAATAT CCATATATAAATTGAAAAGGAATTGTGTTTATTTGGTGCTTTGAACATTATCATTTTAATTTCTCGTTTT TATATATATACAAAATTAAAAAGAATAAAAAAACATCAAAATTTTGATCTTCTCAAAGGTGAAGTTAAGA GGCATTTTGATCAAGAGAGGTTCATCTTTATAAAAAAAAAAACAACATAAGTGTGATAAATTTGACAAGA AATGGGGATTGTATTTGGATTATTTTATGCAATAAGCTTCACCTGTGCTTCTTCATATGTTGTATAACTT GAATATCTTTTCTGTGTAAAACCGTTGTATCAACATTGCAAATTGATATGAAACTAATAAAAGTTGTTTT GTTTTTCTCAGGACAAAAAAATATAGAAGAATAACAATTTTCCTGATATTTTGTTGCATGCCAAATGAAA AACGAGTTAGTGCAGTTATTTCCAATATACAGTACCCACCCCGTAGTAATAGTTCAGTACTAGTCCATAC TCTTTATTTTAATTGTAGATTTTATTGTAGTTTTATGTTGTTGTTTGTTTGTTTCTTTTAAATTTCATTG ATGGATTCTATGAACCTTGTGGAGTCATATGTGAGATGGGAAGCAATCAGACGAACACTTAAGATCATTC AATGAAAGAAAGAAATAACCTTTAGGTGTCAAAAATACCAATCTGGCATACAAATCTAAAAATGAAAAAT TAAACTTTGTACGAATAAAAACCAGGAAAAATCTCTCGGTTAGTGGATTCCAATGAAGCTTGTCCTTAGC CGTGCATTCTTTTCTCCATTTAGTCAATAATGCGTTGTAAATAAGCTTCCTATTAGATCTAATTCTGATA TATCTTTTTTTTTTCTTTTTAAAATATTTCCCCCCTCTTTTTAAATAATGTATGTTAGCAATAAAAAAAA AATAGAATCATGTAAACTGGTATGTGACTTTTTTCACAATTCCATTTATATCATTTAAGGAACTACAGCA TAATCAGACGTATATGTTTGTGACACTTTTAATGAGGAAAGTTGAAGTAGATCAAATTTTGTTTGATATT TCCTTTTAACAGGTATGAAGTTAAAATATAACTTGTGTAATCGTTATTTCATGATATTGTATATGGACTG ATCTGAATAAAGTTTAGGAAAGTTTTCAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds