Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT115964.1 TSA: Strongylocentrotus purpuratus WHL22.325594.0 mRNA sequence AAAAAATTAAAAAAATGTTTTGTCTTTCTGATAATTTAAGTTTTAACTGCCACGTACTTACTCCACCAAC AGATTTGAATTCAGTCAACACTTGCATTTCTGCTAAAATGGTCTAATCTATCCAAAAAAAAATTTAGGTG TTGTGTTTTTGATGGATAAATTGAATGACGAATCATTCATGACATCATATGCCATACTTGACATTTTGAT AATCATTACGCCCGTCCCCGCGAATGTTGCCAAATTGAGCGATTTTCATTAAACAGTAATATACACATTG ATGTAAACCATTATTTAACGTTTTTCCAAATATTATAAAACTTTCTGTAAAATTATTAAAATCTTCATGA AAGGAAACGGCTATTTTTCATCGCCTAAAAATGAGTTATTACATCAAATTTGATCAACTAGTACTACATA GTTGTGGTTTAAAGATGGCGGCTTACATGGACGGCGAAGAAAATTTTGCAGACGACGAAATTGGACGCTT TGTTCCTCCTTTTGGGGTTGGGGGAATGTGTATTGCATTTGAAAAATGTCCATTGTGTTTTACTGCGAGA AGGCCGTTTACATGTGAAAGATGTCTGGAGAATGGGGATTTCAGCCATTCATCTAGCAAAAGTTCTTCGG AGTCGGAGACAGAATCGGAGAGGTATTTTGAAAAACTTGACAGACTACAGAGGTTTAGAAGTGAGAGAGA CAGATTATTATCAAAACTTACCAATAGACTCGAGGAAAGGAATTCAGTTGCAGAAAAGCAATGGGAGGTG TCACTCATGAAGGGGAGGTTAGAATGGACTCGAAAGGCAATACAGGATGGAAGAGGCATGGTGGAAAAGG ATAAGCAATCATTAAAGAAGCGTCTTGATGAAGTGAGAGCTGCTAAGGCCAAGAGAGATGAACATAACAA GAAAGTGCTCAAAATCCAGAAATATCTAGAACACATTCGAACCAACATAGACAGCCGTGAAGAATCCCTG GGGGAGAAAAATGACCAACTGAGAACAAAGAGGCAGGAAAAAGTACAGCAGCTGTTACATTATGTATTCC CCATCACTGAAATACAGCATACTGCACCAGCAGAAGAGGCTTGGCAGGAGGAAGCAAGACAGATGTCTGA GTCTGAAGCTGATGATAAGTCAGAAGAAGACGAGCTGGTAGCTGCCTTGGCTGAGGCCAGGAGGACGTCC TATGTCAGAGGTCGCTGGGTAGAAACCATTAACAATGGAGAAGCTCATTACAGTATTGTCCATCCAAATG TCAGAGTGCCAGCCAATGGAGATTATTCTGCATATGTAGCATGCACACTGACCAGTGAGCCTGATGTCCC TGACCCTGATGGAGAGTTAGATCTTCACAATCCTGGACACCAGGTATCAGCAATGCTGTGCTACACAGCT CAATTAGTAGCTCACATTGCCAATACATTAGATGTTCCTCTAGTCAGGAAGGTCCATTTCAGTCGATTCT GCAAGTCTGAACTCAACCTACGGCAGTTTTCTTCAGCAGTTGAGAAGCTGAACAGTAGTGTGCTCTTCCT ATGCTTTAGTCAGGCTATTCCACCTGATAAGCTCCACCCTCATTACACAATGAGAAACCTTATCACCATG GTTGACAGCAAACACCAAGATTATGGAAGGACAAGTGACTTTGAGGTTCACAGTGACCTTCTCCTCGCTA CATTAACTACACCCAACATGACCAGTATGCTAAGTGGGTCAGGCAGTGAGAGCCAACAGGATTCTCCCGA CGATGACGGTGCCAGCACTGGATCTGCAGACCAGGAGGAATGGGAAACAGTCCCGACCTCTCTGTCGCTC CTCCCTCAGGGGCCGGTGGGAGTGAGTGAGGAAGGCAACAGCCCCTCTCCACCAGAACCCAGCCCTTCTA TGATGAGTGCTTCCAACTTGCCACAAGCCCCTGGGGGTCTGGTATCATCAGCAGTAGCATCAGTTGCATC ACTGTGGAGAACTGCCACTAGCCAACTAGAGAAAAGATGATGAAGGTAACAAGGGGAGGAGGCGTACTCC CCTTTACCTCTCCTTTGTAATGCAGGTTATTGTAGATGTAGCATTTATTAAGTGATTCCATATTAGCTGC AAATGGTTCTTTAGTTACGAGAAATGGCTGGAAGAACTGTGTGAATCAGAATGTGATTTATATTCTTTTG CACGGTTTTCATATCTGATGACTTGACATCTGTCCTTTCAATTTTGTAGAAATTACTGGATTCAGCATTT GCTGATATAAGTTTGGGGAGGAGAAGCCACTGGCACATATATAAGATCTATACATTGGTTTCATGAAACG GATGTGTTGTAATTAACATGCGTTCTAATGGGATGTTGGTGAACTTGTACTTCTGGGGGTTTTGGTGAAA CGATGCCCTGCAAAGCAACAAAATCAAGTTGTTTTGCTTTTAGTCTCGGGGAATCTTGACTCTAATTAGA AAGGGGAGCATGTGCACCAAGCAAAGCATCTGAGCTGCCTTTTGTGATCATCAAGATTTTGGATTCATTT TAGTTCCTTCATTGACAGGAATATATCAATGTAAATCAGTCTATAAAGGTCCAGCTTTATCTTATAAGGA CAAATGCCTTATTGTAAATCAGGTATAACATCTAAATATTGTAGTTTGTTAAACAATGGAAAGTTCTGCA ATTATGTTTAAGACACATAAATTCCTTACTCCAATATTACTATCAATGTATTGCCAAGGAATGTTAGTGC CAGGCAGGGATTGGAACCCTCAACTGCTCCATTGAGAATCAAGTGAATGAACCACTATACCATATACGAC AACACTGCCAATTTTACATTCACTCATATGTACATAAGGGGGTATCTTTTCTGAAGTTTAACAAAAACCC AGCCATCTCTCTTTGATTAAAGAGTCATTTGCGGTGCCTTGAATTCCTGCCATAAAAAAAGGACATAAAA CTATCGCAATGTTTGTGATTAAAACATGCTGGCAAATCATATATGTGAAAGATTTTAGGCTCGCATTAAT ATTATGATGGACTCTTTTGACCATCACAGCAGATATTTATGGTTTCATTTTCTTTTTTAGTTCATGACGA CGATAAATTCATTGCAACTCCTTTAGTCCTGCTTAGACTATATTCTCTTCAATATAAATAGTGCTGAAGG TATGTTTTAGACGTGTCTGTACTCTGTTTATCAAAACCCACTAGAAGCTTCATTATTCTTTCTTACAATT CTTTAACTCTGGCAATAGGTTGACCTATACAAGCTATCAAGAGAATAAGAAGTTCACATGCTGCACTTTT TAAGATATTTTGTGCAATTTGGTCAAAAAACATAAACAATAGCAAGTTTTCTTGAATGTGTATCACATTT TAATGGTAATGATAAATTATATCAGTACAATTGTGTGGTTCATGGAGAACTCCAAAGACATTTATATCAA TTTCTCACTTCGATGTATTGGGCCAACTAGAAATGCGAGTATTGTCATCAATGACTTGTAAACTAATAAA TCTTTCTTTCATGTGCTCTATATCTAATTTTATTACTATGTGGAATGGTTAAACTTAACTGTTTATCTAA TTCTAAAACTGAATTGATTTCCAGGTGAAGAAATGAAAAATAGTTTGTGAAAGTGTGGAATGAGATTATG CTAATGTGAACAGACATGTGTACGTTTTTTAAGAAGAAAAGACATGAATGGTGCTATACTTGTAAAGAGC TAACTTTATTATTTTGTGTGTATTTTATTTTATTTACAGCTGAACTCTTCATTTGCTATGAGGGGTAATT CTTGTTTGCATCATCATAGCAGCTTGCTTTATAAAATAAAAAAATTGCTTTTAGAGTTGAAACAATTATC AAAATGTTATTGATATGTTTCACGTAAAGCTGCTGCTCACCAGAGCTCTCAGAGATGGTCTAATGTGTCA GCAAACTCAATAGTCCATAAATGTTTTGTGAGGAATTTCACAACTTTGAACATGTTTTCAACATGTGTAT GAAAATAATAACAAGAACATGGGAGGGAAGAATCCAGAATGTATCAAGTCCCCTCTCTCACCTCGTTTTT GTTTTTGTTTAGTTTTTTCCCTCATAATAATAATATGTTCCGTGCCTAGAAACAAAGTATTAGGCGCATT ATAAATGTGAGCTATTATTGTTATTATTATAGAGGGTCATAAATGAAGCCTGTTTAAATGTTGATCTATT TGTGTTGTGAATTTGAAATCTGAAGGCCCCTTGTGCACTGGAGCCATGTCGGTGTCAAGCCCTGAATACA AATATGGGAATTGCCATGATATACATGTACACTCTCTATTGTAATATATGTGCCTGGGGTGTCGCATGAT AATAACAAGAATAGTGTGGAAGATTTGATAAGTACCGGTTGGTTTGAAAGAACTGTACAGTAGACAGTAC CAATGGTCATTGAGTGTTTTTTGTTTTTTAATTCAGTGCTTGTTTTTAATTCAGTGCTTGTAAGTGTAAT GTTGTGTACATTAAGCTCGCCTGCAGCTAAGGCAGTAACGAGGAAAGTACTTGAGAAGAGGTGGGTTCTT TATAAATACCGTATGCAATTCAGGGATGTGTTGTTTTTTTACCTTGCATATCAAAGAGTAATGAAGAATG AAATAGGTTTTGTGAAGTGAGTACCGTATATAATTTGCAGAGAGAGTATACAGAGCGAGAGGCAGAGTAA TTAAGAGAGATGGCGTGTGTGTTTAAGTGAGGGAGTGAATGAGAATGCGAGAGGGAGAGAGAGAGAGAAA GAAAATACAAGATAATTAATTAATTAATTATACCAAGGGTTTGATAAATGGAGCTTATGAAAGACTTGAA GGTAATACTTGTATTGATATGCTTGTAAACAGAGAAGATTTGAACGTCAACTATTCGAATATAACCAGCT TAATGTGTGTCTGCATGTATCGTATGGTAGGTATATGCAGGTCAGATATAGGTAAAATTGTGTATTAAAG GACACTTTGAAGCAGTTGATTTACGTATAACTCAAACATGATCAATCATAATTCAGCTCTCTCAAACCAA AGTATGTTCCTACGTAATGTGAGATGAGATTGATTTGTTACGATCCATTATACTTTTAATTTTGTAATAC TTGGAAACATGCTAGATCGTATAGCATCATTTATCATTGTGCCTCATTTAAAGAAAAATTACCATCAGTA TTTTTATAGGTATAATTATATGCAAGACCAATTTTTTAATTCTATATTGTGAGGTGTTTTTTTGTTCCTC ATGAATTTATTAAAAAGCTTTGTGACAGGAGAGCTCAAGAAATCATTATGATTAACTCAATATTTAAATG ATTTTATAATACATGTGTCTCATAATTAATAGAGCCTTCAATTGATATACAAAGAGTATTGTTATCTCCT TAAGTTTGTACCACATATTTCTAAACCAGTTTTTGTTTTATGTTCATGTATATTTTTTGTTTCATTGTTG TTTTTAATGTTAACAAATACTGGTACATCTACAAAATGTTGTGATTTGATTCAATATTGCAATATAGTTC AAATCTCTCATTTTTATTGTAACTGTAACACAGCTAATAAGATGTCCCTTCTTTGGTTCTTCCTTGTGAC ATGTGATTCAAATAAAGTGATAACTGAAGAAAAGGACCGAGGTTTGTTCTTAATATGTCTGGGGACAGTT ATGACTACAGTGCTGAATGATAGTGTAATAGTGTTGTTATGCCGAACATGTTTCAGCTCTGTGTCAAAAG CCTACATTGAGATCACCCCTGCTAAATGTATTCAGTTTATTCATAGCTATGTAGAAATGCATAGAAGGGG GTTAAATGTGCAATGTAAAAGTCAAACTGATTTTAACATCACTCTCAAACCATGGTCAATGCTTATGATA TAGGTTGATAATTAATAAACATATTTTTACATGGACATATACAATACATTTTTTTTTTTATTTGCCATAT TCAGGATTTATTTTATCTATCTGTGTATTACATTTGTTTTGTTATGTTAAATATATAGACTCCACTCATG TACTGATGATATGCATACACATAGGGAATTCAATTTTGAAGAAAAAATGTTGAAGTACATTTTAAGGATA CTAATGTTATTCTTCTTGTAGTATGTTTTAGCCCCATGGTTTCACCAATGAAGCTTCTTGGTTTAACAAA ATTAGGAACGACTGGTGTATAATATAATATGGTCAAATATTGAAATTGCAGTGCTGTGTATGTGGAGGAA GGATATGAAAACCCTGTGCAATAAACGGGATACCATTCCATATCTTAGAATATGAATACTCTTGTGGATC TCTTTATTCTCTTCATTACTGAACAAAATTAATTTAACCTGTTGTATTTGCTTGTTAGGTGTACTAATAA TTGTGTGAGCTTGTGTGAAAATAATGGCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds