Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT115481.1 TSA: Strongylocentrotus purpuratus WHL22.433357.0 mRNA sequence CTCAGACCTTCATCTGGCAGCAGAGCTGGGCAAGACACTCCTTGACAGGAACAAAGACCTGGAGGCAAGC CTGCTAGATACACAGCAGCAAAATGAAGAGCAAGTCATGCAGATCGTGTACCTGGAGAAGCAGCTTCACA TCCTTCGTGATGTCACAGAGTCCAAATCCCACATCTATGAGCAGCTTGATATCAGTTCCCAGGAGCTGGA CGCAGAGAACCAGCAGCTTAAACATGACCTCAAGACTGCACAGCAGAGGGTTCTCAGGATGACTGAAACG GTTGAAAATCTAGAACTCCAAGTTCATGACCAGGGATCTACGATAGAGCAGCTGAGGACAGCAGACCGAG AGCGCTTGAGAGAGCGGAGACGACTGGAGCGGGTTCATGATGCTATGGTCACTAACGGCTGGGGAGGTCT CCCTCTAAGAAGAGCTCACAGCTATGACTTGGGGAAACCATCTGTTGACAGCCTGTATGAAGAGGAGTTG AGTAATCTGCAGCTTAGTAATCGCAATCTGAAGCAAGAACTCGCCCTGAAAGAACAGAAGAAGGACGAGC TCGAGTCGGAACTTGCCGTTCTTGTTCGTGAGAACAAAGCCTTTGAAAATCGTAACCGCGAGCTACAGGT GAAATCAAGGATGTTTGAAATCAAGCGAGATTATCGTTCACTGGACAACCTGAATGAAACTGTCTGCAAG TACTGTGATAGTGTTATGACTTTAGGCAGTGATGAGAAATCGGATGACTCGGAGAAGATGAGTGAGTCAA AGAATGATAGGGAACTGAAGCGTTGTAGTAGTCTAGATTTGAGACCGATAGCCGAGGAGCTGAGCCAAGA ACCCAAGTATCCTCTGCCTAACCATGACCTGGTTCAATCGGATGGTGTGTCACTCCTGGGTGAGATTGAT GCCCAGTACCATAACCTCATGGACAAGTATACCACTCTGCTGACGCGCAGTCGCAGTGCCTCCTTCCATG AGTCCTCCAGCAAACCAAGAACCAACAGCCTCCGACGTAAGGCAGATTCAGCATCATCCCAGGACGGAGG TGACTTGAGCTCTTCACCCACCAAGGCTTCCAGCATGAGCCTTCCTGGCTCTTGCCCTCCTTCTTCCACC TCATCTTCCACGTCATCAAAGCAAGAAACTCCCCCTTGTCCGGTGGACAACCATTTTGAAACGGGACCAC CCGAGTACAAAGCACTCTTTAAAAGGATATATGAGGTTTTGCACAGACCCCTTAAAAAGACAAAGTCAAA GTCTAAGCTTGAAAAGTCATGAACGAACAGGCTGTCCAATATATCGTTATAATAAAAAGCAGTATTAAAC AAGATGAGAGAACGATATTAAGAAAGAGAACTTGGAAAATTCATTGTAATTGAAAGTTGTACATGTACTC TGATTGTTTTGTAACAAGAGATGGTAGTTGATTAATTTTACATTAAATTATTGTTACGATAATTATTTCT CTACTTTTATACTTTCCCTAAAGCCTGTAGCCTGATATCAAGCTTATTTTACGGTGTCAGGATTCAATGC TCCTGAGAGAATTAAGTTGCTGTTGTACCTGGTCACTACACTAGCCATTCCTCAACGGAGCATTCCATGT TGGGTGTATCCGGTCAGGCAAATATCGTGGAGCTTTTCCACTCTGAAATTCCGCTAATAATTTGTGTTTG TTAGTTCAGCTTATCCATTGACTGTCACTTTCCCTCCTGAAACCACCTTGTAAATAAATAAGATCAGGCT ATAAGCTTTACGGAAACTTTTGTAGTTTGATATATACCGATACATATGTATCGGTACAATTATTACAAGG GATTATTTGTAATTGTATTGAAGAGTGTTTTTACTCCATCCTATTGCTGTCCCATTTTCCATCAATCTTG CCAAAGTCCAGTACCAAATTACTCAGAAGTGCAAAGGATTATTACGAATAATAGAAAAAGGAAAGAATTC ATTCAGCTGAATAGGCAATAGGAAATTGAACTAAATTCTGTAAAAAGAAGAGCAACTTTCATATTTTCGA ATATCTTTGTGGAGGAAGTGTGTTTTTATGTTTTTCTGCATTCCATATGACTCAGTTTTTGCCTTCAGTG TAATAATTCTTTGTTTGCAGTGTATGCCTTCAACGTCAGATAAGTATTAGAATATTAGTTGTGCTAGATT ACTGTACATGTATAAATTGTAACACATTTCTGTTGGATTTAGTGATGAAGTTGATGTCAGCCTTGTCAGG GTCTCACATATTTAGGTATGGGCACCTTGACTCCATCTTTCATGTCATCTCCTTGTATGTGTAGTAAACC TGTAATGTCATTCCCATCAAGAAATCAGGGTATATGTTAGACAGAGTTTTTAAGTGTAATCAAGTTTGCG TGTGTTGCTGCTGTATTTCCAGCATTGATCCGTAGTTGAGTTCTGAGTTTAGGGGTATTCAATATATCGG TCACAATCTTAATCTTGATCTTGAGAGGACCAAGATTTCATGCTTATCAATTGGCAGAAGCTTAAAGGTC TACCTGGGACCCGTTTCACAAAACCTTTTTTCAATGACAAATGACAAAAATTAGTGACAAATCTGCTGAT AACCAATCAAAAAGGATTCAGTAGCTTATAACAAAAACTGTCATTTGTCACTGATGACAAGTTTTGTGAA ATGCCCCCTCCCCCCATGTCTTTGTAAGTTTCAGGTCTTGACCATAAGCACTGCTGTCAAACTGTACTGT ACTTTTAATCAAGCAACACATTATTTGTTTTTCACAGCGAAAAGCATTTGTATGCTTGACACTGGTAGCT CTAGGATAGCCATTTGAGCACAAAGTTAAATACAGCACAAAAAAAGCAACAGGGGCATATTTATTTAACC CTTAGAAAAGAACAAGGTTTTTAGACAGCTATCACAAAAAATGTTTTGTTTTAATTCTTATTTCATATTT ATACAAAAGTATTCCATACTGTCAAACTTTACAAGTCATCAGTCATTTTGAATTTTAAGAAGGGTGATGG TCTTTCTGGTAGTAGAAAGTGTACCGTATTTAAATTTGGATGGTTCGAAAATGTAACACCTGCCAGGGTA GTTGTAAAAAGGAACTGGTAGTTCACTATTCTGACAGTATTTCTATGCTTTATATGTAAGTTCTTCATAT CCAAATCACATTGGCGATACAATTGTAAGTGTATAAAAGGTTCAGTTTTCCATAAATGTAAAAAGTATCT TCAAAATTGCAATAGCCCCTTTATTATGTACTGTGAGTACTGAGAAGAGGCAGAATTTAATCTCATTAAC TATTAAAGCTACCATATGATAGTAGGCCTACACCTACAGTGTGTAGCAATATAAGTGATGACCATTGATA TTCAGATTTGATTCTTCTATGTTTGGCTGATGTTTCTCTTTGATAAAAGAATTATTGACATTTATCCTAT GATTTATAGTTTCTTACCAGTGGTAGTCATAAGAGCTCCTATGGTATTGGTAGCTCATCTTTTCATGGTA TTGTCTATAAACTGCCGTTTCCTGTTGGAAACCTGTTTAAGAGGATTTCCTGTTTATGAATTCATTTACA CATTACTGCGTAAATGTAGCACTTTACAGTGCCATAGCTAGTAGAGTAATAATAATAATAGTCTTTTAAA GTCCACTCCAAATTTTATTAAGTTAAACCGAAAATGGAAATTCTTTTTGCCCCATTGATCGTGAGCCCGG CAGCTCGACGTTGCTCTATCCCTTATTGTAACGTCTTTTGGTATGACGCGGCCAGGGTTCGAACCCACGA CCTCCCGGTTGTGAGGCGGATGCTCTACTGACTGAGCCATCACCCTGATGTAAAAGTAGTTGCATCAGTG GAAGTTGTTCTTGTCACAAAGTTTCAAACCTGTTGCTGTTCCATATTTAAAACCCTCAGTGACCCCCTTG GTCTAAAGTAGTTCTTTCAATTCACTATGTAAAGTGCTTGCTGAACTATCATGATTAATCTTGCAGCTCT AGTTTAATCTATAATATATTCTTGAATGCAACTCTTAGATATAGTTTTCCTTTCAATGCGCTGTCTCCTG AGGCAGGAATAAATGATCTTACTTTAAAAAATACTCTTTAGATCATCTCATTTGATAATTGCCAAAGCAA TATCTAGGTAGATAATTAGGTAGGATGTTTGTATGTTACATTATAGAGTAAATGTATTTAATTCAACTTT TCTAATTCGTATTAGATTTTTACAATTAAGATGCCCATAAATTGGACTTGGGTAAAATTATGTTTAGCTG ACAATTTTCCTGAATGAATCTATGATCCATGAATTAACAGTTTGTCATAACAGTAGTCATTTTGTATTCC ATTAAATGTGTGATTATAGAGCATTTGATGTGTTTTTAGAAATTGTCACAGTATCTTTATCTTGCCTACA TTATTGATGTGATAACTTACATGAATTATATTATCTGATGCTTATTTTCATTTTAATTTAAGGGAAGATG AGATTTTTTTTGCATGATTGCATAGCAGACATATACAAAAGTCCCACAAATTCCATGTATAAAAAGCAGC TACCGGTACTCCAAATATATTCAAATGCGTAATATATTGATTGTATCAAGTATATTATAATTACTAACAA AATGTTTGGAAAACTCAATGGGTGGTATTTTAATGCATGTATTAATCATTTATCTTAAATTTATTTCACA ACATCTGTAAATGGAAGAAATGCATGCATGTTCAGTTTTTTTTTAAAATAGAGATTTGCATCGATGGCCG TTATAGGTTAATGGCATTAACATAATGAATTGAACAAAAATATAACGAAATATATTGTGCATGATATTTT CTTTACAAGAAAAAAAGATATGCCCTGTATGTGTTGAGTGGACTTTGATAAAAACATGAGACGACAAGAA ACCTGAAAAACATTTCATGTGTATGATGTTCCCGGAGATCCCATGAGACCAACAATATCGGTCCGGTGAA TACTTAGATTTCAGAAGGTCGTTGAGACAGAAATTGTCGGTTCACATGGGCTGTCAGTCTAGTCGGCTCT CAGTCTGATAGACCGTCTGTCTTGTCGGTTGTAGCTGATGTTTGTACTTCATAGGGCAATGATTTGAGGA TTTGTATTATTATAATATTGTATTCCATTATTATTATTCAATGAAGTACTTATGTTTTCACAGTTTTTTA ATGATTTTAATACTTTTCTTTAATAATTAAGTTATGTTACTATGTATTTTACTCCTGACTTTATAATTCA GGCTGAAATTTGCCCAAAAATGTATTATTTTACTTTATATCTACAATTCCTACTGGAACTCTACTGATTT GCTGAAGTTCATACCAGTTTTTGGTGATATGTGATAACGTACCAATCACAAGAAAGCTGAGGAAAAATAG TTTGTATTATGAGTATGTAAATTATGTATGATTGTCTTATTCAGAGTTGCAAAATTTCTTCCAGAAAGGT TTTATCACAAATTTGCCAAATTCGCTGCGTGTTTGAATTAGTTACAGTGGTTTTAATTGTGTGTGTGAGT GCAATGTATTTGACTGTACAGCTTAAAAATGAAAAGAAACTCAAGTTTTTAATGTTCTTGGTGCTGAATT GATGTGTTTCCATGTTTCTTAATATGATACTTGTGCCTACAAGAATAAGTGTAACTTTTTACTTCCTATT ATGCATGTATTTCAGTGTGAGTTATTTTATTTGTGTCTTTGAAAGAGCAGCAACTGCAAGGCTCCTTTTC TGTAAATGTAATTTTGTCTGATTGAGTGGTTAAGTTTCTAAAAGTAATTTGTTTTGTTCAGCATTATCTT TAACTCAAATGTTTAAATTCTTTATATTATTTATACAACATAGATCTACATATTGTAATTATAAAAGGCG TTGAATATATATTAAAAATCATGTATAATGTTTTAGATATTGGAAATTAAATTCTAATCTAAGCAGTTTT TAAATGGTAGTAAATCAACTTGATGGTTAAGGTCACATGAGTCAAAATTTAACTCTGTAGAACTCCCAAT ATTTACAGAAGACTGAATATGTCTTCTAATGTTTTTCACCCCCTCCTCTATTTCATGCTGTAAGAAAATC TTTGTGTTTTAGCACTATGGCGTAATTGGCTTTATTGTCATAGACTACCATTCATTTTTTAATTTGAATG GAGTTGAGGGCAGTTGGGGCAAAATAGTAAATTCAATATTTTAACAATCCGGTGCATTCCTGGTAACCCA GCCGACAAATATTAATGAAGGTCATTTCGGCATTTGCCACATGATGAGCTTGGTGTATTGGTATTTTAGA TAGACAGAAAGATTGACACCATTAGAAACATTAGCAATGAAGCACTATAAATTGGTAACAATTTCAATAC CCTCACTTCAAATTTAAGCATTCAAGCTGCAAATAGTTGATGTCTTTTTGCATGTATGGGACTCAATCTT GCAATAAATATACATTGATGGCTTAAAAAATTGGAAAGAAAATAATAAAGTGATGCATTCTTACCTATCA ATACAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds