Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990338.1 PREDICTED: Strongylocentrotus purpuratus rho GTPase-activating protein 27 (LOC105445543), transcript variant X1, mRNA TTTTTAACATCTTATAAGTAGTAATGTCTTGAAAGTGGAAAAGTATTTGGCAGCAGATTAAAATTGCAAG TTTCTTTGCAACCTCACAATTAAACAAGAATTTGAGAAATGCAACTCTATACATTCCTGGGTACATGTAC TTTTAGACCTTAACCCAGACTGTATGTCTGGGTTGCGGGCTAGATGGGTGTTAATTTCGACCCTTTTACA TGGACCCAACACCCTTCTGAATCTCAACAGACGATACATACATGTAAATGTAAATGTGTACCAACTGATC TTATCGTGAGGGAGGTGCTAGTAATTCTAAAAAATGACAGATATATCCTGTCGTTATGATAAAGGCTGAC AAAGCTTGACAAAGCTTGGCAAAATATAAGTAATCCTGCTACATACAACAGTACATGTACATGTCATAAC AGGAAATACCTTTCTGTAATCGACTCTCTCATCCTCATTATCTCCTAATAATGACATAGTTTTGGGGGAA ATATAAATAGTTGGCATGCTTGCATGTACATAAATACTTGACAGTAGTTCCTTTAATGACATGGGGTGAC AAACCAGTGGGACTCTTTTACTCACTGAATGGACTTTGCGACCTAGAGATTTTGTTTTTTCTATGTTGGG GTGCAAAAAAAAAAGTTAGTGAACGAATGGGGAAGTTTGCCCTCAAAAATACAGGGGTTGAACTAATCCA AAGTCTGACTAAGGTGCTACATGTAAATGTAGAGCAGACAGGATAGAGAGCGAGAGAGAGGTTTAATTAG TTAGTATAGGGAAGACGTGCAAGCGAAAAGCTGCCAGGAATCGGTGACGTTACCAGAGGCATCCTCTCTA TCAGTTACATCAGGTGAACGAGGAGACTCTTGCTTTGTTTCACCGGTTTGACGATTCCCCTCTGGATTCC TATCGCGGCTGACCTGTCGAGCAAGCCTGGTTGTTGACGTTGGAGAAAAGGAACTCGAGTCATACAAAGA GAGTGCTCAGGTGGAAAACTAGCTTAAACTTTGCAGTGAATAGACCGACTTCACAATTTTCCCAGCCATT TTTCTGCATTGTGTTGGTGATTTAGGTTCAGCTAGTTCCCTGTTGCAGTACACCTAGCCACTTTGGAATT TCGCAAATCACTTTGGAACTTGTTTACCAGCAGTTTTGAAAGGTTTTATGTAACTGTCATGTGCTCCATT TTGTAACTAGTACAGTACTTCATTACTTGTGTTTGAGGACAGATTGTTTGTTTTAAGTGTCGAAGGATTG GATATCACTGACATAACAGAGCTACATGTAGTGGCTTGACAATTATACATTTAGGTGTTTCAAAACAAAC AGGACTTTGGAACTGATTGTCCCAAGAATTTGCAATAAATGCAATAATATGTTTTTGCACAGAAGAGTGC ACAGGGCAGACGTTGTTTGAGAGCTCCACTGTGTGACACTACATGGATAGAGGAACTTGTTGAGGTACTA CTTTTAACGTGGACATGACTTTGGTAGGAATGGCAGGTGAACAGCAGCAAGATATTTCTGGCAAGATCAA AAGATTCGAGAGGGCTTCGATGAAATTGGAAAACAGAGGTCCCGAGGGGAAAGCCAAAGTGAAAGATGCA AACGACAATTACACCACTGAACTTGAAACCAAGCAGGATGGCATAGGGAAGAAGATTCAGCTTATGGAGG CGAGGCTTGGAAGCATCGATGAAGAAAATAGTCGCCAAGACGATGAGAAACCCAGGAGTCCCAGTGATGT CTTGTTGAAAAGAAGTCCAAGATCTGCCTCGAATGAGAATCTTCTGGCTGTTGGGAGTCCCGAACTTAGG AGAAAAATGTCGAGCCATTTCCTCAGAAAATCCTCAGCGCCTAGTCTATTAGCGACTGTTCCAGATGAAA GTAGATTTTCAAAAGCAGATGACCAAACAAAAGAGAAGGAACAGTTTGTCAGAGAAGATGTGCCACATGT GTTTGTGTTCCCCAGTGCTGACTCTGATAAGATCAAAGAGACTGAAGAGGGTCAGCATGGAGAGAGAGAA GGAGAGCATTTGGGTGGAGGACAGAGTGGTGGAAAGGACGGAGGGAAAGGGATGACAAAGAGGATTTCTC GCGTCAGGAAGAGTATGAGTATGAGGTTTTCAAGAAGAGAAAAGAAAAGCCACGACACTGATCACGCAAG CAAAGGAAAGAACGAAGCGACAGAGAATGAGGATTGTAAGCAAGTCGAGGAAAAAGACAAGTGCCAAGTC AGTATTATTGTTAGCAAATCGCCGAGTGACATCCCACCCAACAAGGAAATAGTGAGAGAACTGTCAAGTT TTAAGTTCAAAGGACCGAGACCCGTTGATGAACGTGGTGTTACAAAGAGCACGTCAGACAAGGCCACTCC AGAAACGTCCTTGATGGATGTAAATCCCAAGCAAGGCGATAGCGGAGATGGGAAGAAGGGTTTGGTCGCC GTGAAACCCAACCGTCGACGGAACCGTCAAATTCAACTCCCAGTGCCACCGTCCAAGCCTCCAAGCCAAC GCCAGACAAACAGCATCCATGAATATGACCTGATCAGTTTTGGTGATGACGGCGCCCAGGGTGTCCAGGG TGTCCCATCAATGATGAGCAGCGATAAAGAACAGGAGGAGAAACCATTGAACCCGGTGTATGCTACTCTG TGCCCATCTGATGAGGAAGAGGAGGGCAGCTCTGACGCAGATCCTGCAATCCGTGAGGACATCAAGTTCA TTGACACACGCTTCATCGCGAGCCGCACCATAGACAGAAAGTTCGCTGAACATGTCTACGAGGATATCGA CAAGGTGATGGCAAAGGTCAAAAAGCTGCCGGTTCCCGATATAGGAGCATATCAAGTTTCGAATCTTACA CACACTGATATAGAACCAGTTAAACCTGTAGTTTATGATGAACCCCAGGCACATATAGAAAGTAGCCCTC ATCATTCACCAAAACCAGTCTCCTATGATCAACCTGCTTCGTACACACCGACACCGAGCAGAGAGATCCC CCAGAACTCTGGTGGGGATGGCGTGGTCAAGAACCCTGGAGCCCGCAACTGGGCGCATCGGCTGCCATCA GACACCAGCAGCGGCAGCCCGCAGAGCTATGACGTACCCCAGACAGGTCCCAAAGGATCTCAGAAGCCCC ACCTAGGGTCGGGAAGAGGAGGGGGAAGCACGCCCCACAGTCCAACAACAGTTGTCCCTCCGCAAGATGA TCTGAGTGTACCCCGTGGTTGGAGAGTGGAACAGACTGTCACAAGAGACCCTGTTTTCATCAATGAGATC ACATCAGAAAAGTGGTATAAAGCAACTCCAACGCAGGGAGAGCCTTACTACTACAGTGAAGACAGGTCAC AGACACGCTGGGATCTACCGTCAGTGCCCTCTTCTCCTCGCCATCGCATGGTATCGGAAGGTGGAGGTCA AGCCGACGAGCCCAAGCTACCCAGCCAAAAGCTCCGCCAGGGGAAAGCGTCATCGGTGCGCCCTCATTCC TTCCACCCTCACTTACGGTCTTCCAGCCCCAGTATACCTTACGACGGCCGCTTTGTAGACAATCCGTCCC CACCTGTAACTAATCAGAAAGATGAAATTAAGCGAAGATTTAATAATAGGATAAGCTTATACGCGCCGAC TGAGATGGAAGTGAGAGAGAAGGAGGGTATGCTGAGCATGGTGCTGATGAAAGATAGAGTGCCGAAGAAG AAGAGCCGGCCGGGGTACGCGGTCTTGGCCGGTTCACAACTCAAATACTACAAAGATCACAAGCACTATG AGCGGGATGCAAGTAACCCTGAAGTGAGTCTAACCTTATTCAGAAATGAGGTTTGCTGGTGCAGAAGTAG AACTCCAGGAAAGAGATTAATCTTTGAGCTGTCTACCACCGATCAAGGTATTTTCCTGGTCCAGGGAGAG GATGAGATGACTAGTCAGGCATGGTTTGAAGCCATCAGAGGAGCAGTTGGAGGTCGAACAGGGTCATCTT CCGACATTCCCGAGGAACTTTATAACTCCTCGCCTCTGACACCAACTGGTTTGTCACCACCGGTTCCCGA TGCCCCTCCCATGAAGAAGAGCAACAGTAGGATCAGAGAGAAACTGAAGAACTTCATCTTCACGAGACCC GACAAAGAAGACCTGAGACGCAAGGGCATCTTACAAGAGGAGAATGTGTTTGGGAAGGACATCGGGAAGT TATGTGAGAAGGAGAGGACGACGGTACCAGGCTTCGTCAACCAGTGCATCAGGTGCATCGACAAGAGAGG GCTGGAGTGCGACGGTATTTACAGGGTCAGCGGAAACCTCTCTCTCATACAGAAATTACGTTTCCTCGTC GATCAAGAGAAACCCATAGATCTGGAGTCATCACCGTGGAAGGAAGACATCCATGTTATAGCCGGCGCTC TCAAGCTCTACTTCAGGGAACTTCCGGAGCCACTATTCACCTTCAACACCTTTGACAAGTTTATAGCATC CATCAATCAAATACCTGGTACTGATCAGAAGATCTTAGCATTCCGAGAGCTGTTTGGCGAGATGCCTCGC GTGAACCAAGATACCATCTTTGCCCTCTTCTCGCATCTCAAAAGGGTCATGGATAACGTCCATCACAACC GTATGCCGGCCAAGAACGTGGCAACGGTCTTCGGCCCCACCCTCATGTGGCCCGAGCGGGAGAACATAAA CATGGCCATGGCGACCGTCTACCAGAACCAAGTCATGGAGTTTGTCTTATTAGAATTTGACAACATCTTC CGGTAGTGAGCTCCGCCCGTGTTCTCCTGGACTTTGTTTTGTAGAACAATGCGGAAACCAGCATGTGGGA CTGAAGCTAAGAGTCTGGCCAGAACTTGGCATGTGGCTGTAGCAATGTTTTGCTTAGCACATGTCTCCTA TTCCTAAGGACGAGTATTGGAATGATAATTTGTCATAAATCAAGTTGCTCACACGTATGTAATTGTAATA GCTGATGAACGTAAAAAGAGCCATTATCGCCATGTTTATCATGTTCGTGGACTGTCACCAATTCAAGTAC ACGTACCAGGGACTGAATCCAGACTTCAATAGTGTGTAGACATTGCCAAATAAACCCAACTAGTTGATTA ATATTCGCGCATCATTGTTTAACGATCCTCTGTTGCATGGAAATGTCTTCAATGGATAGTTTTCGGAGCT TCCGCAAACAAGACAACACCCAGAGGATACTGAGAATGGGAAGAAATAGATGGGGTTTGTATCTACAAGA AAGTCATAATTTTAAGTGTGCACAAAAGTAACTGTACAGTAATGCATCAGTAGCCTATACAACTGATGGA GGCTTTGCAATTCATGTTGAATCTGTTCAGTTGACGAGACCAACGTTCCTCATCTCCTCCTTTGTTGGTA TCACTGGAAGCATGGCAAATAGCCCAGAAGTGTGTGAGTCCTTGCTCATACTCAAGGTAGAACATTCCAT TGATCAGCCTGCATTGTCGCGGTTGAAACCGGACATGGATCAAGCAGTGGGTAATATTAGTCAGGACTCA ACGACAGCAAGACTGGTTCTCCTGTGGACCTGGGAGGGATCACCCACTGGGTGATCTGAGGAAAAGAATC CAGGGACCCGTTTCACAAAGCTTTTTTTCAATGACAAATGACAAAAATCAACAAATGACAACCAATCAGA AGCAAGGATTTCAGTAGCTTATAACAAAAACTCTCATTTGCCACTGACAAGTTTTGTGAAAAAAAGGATC TCTGATACATTCACACTTGTGTGACAAAGGGGCAATGTACTAAAACTTGAAACAGTGAAGTTTTTAAAGA GTAATAATTTTATGTTCTGTTGACAGTAATAATTTCATGTTTTTTTAAGAATATGATTCCTTTCGATGAC AGAAAAGTTCCTGATGCTTCCGCAAAATGCTCCATCTCATCATGTCTTTTTAAAATGTCTTTCAAGAGAG ATTTATTTCATTGTATCGTATGTTTTCAGCAGCATGAGTGGAGCTGCAACTGCAGTCATTCAGCTCAAAA AGTTTAATATTTTTTTGCAATGTTTTAAAGAAATTCCCTATAGTGGAAAATATATATTATGAGTTGAATC ATGTGACATATTGTTTCTTTCGTTATAAGTTCTAAGCATATTATATTCTCAATTCTATTTTTGTAATTCT TGAGTTACTTGCATACAAAAGGGTATTATATTCACAGATTTATTCCTTTTTATGTTTTAAATGCATTTAT GAATAATTTTGCACAGGCTCTGAAGATTATTTGTTTTCCTTCTATTTAGTATGTTATTTCCCACTGATTC CCCCCATATCCATTTTGTGTAATATTTACCTAGCTATAGTTTAGATACCTCTGCTTAAAGACATTAGTAG TTACTACGGTATTTCCCTGCTTACTCACAATTTGGGACCTGTTTCACAAAGCCTTTTCTCAATGACAAAT GGCAAAAATCAGTGACATATCTGCTTGATAACCAATCAGAAGCAAGGATTTCAGTAGCTAATAACAAAAA CTGTCATTTGTCACTGATGACAAGTTTTGTGAAACGGTTCCCTGGTCATGGATATGTTATTGAGAAAGAT TTGATGACTAACATGGAGAGATGCATGCATTCTGTATTCAGGAGCAAGAATTAGAACCCATGAATAGTTT CGGTTAATCTTTCACTGACAATACCGATGGAAGCCAGAGGCGCAATTAGTTTGTAGGTTGGTCAGATATT TATCATTACAATCAATGTCTCTTGCTGCTAAAAGAGCCACGGTATTCCCTTCTCCAAAAATATGCAGGCT GATACTTTTTTACGAAAAAAAAAGTCTTTCCAATTTAATTCCAACACTTTAAGTCCTTCGCATTTACAGA TATAAATCAGAAATGGAACGACAATACATTGTCATTTGAATACTGCTTGGTAGTTTTAGTCCGAACAAAA TTCATTGTAATTAATATCAGTGACGATTTAAATACATAAATGCATGTTACTGGAACATCATTACCAAAAT CCCTTCATTTTGAAATTCATTCAACATCTCAATTTACTTATCGTATGGTTTGATAGTTATAAAATGTTCA GATTTATTCATAAACTTGAAGCATAATTCATTTTTATATGTCCATGTATATTCCCATGTATTGAATTACA TGTATATTTATTTACTTACAGTGTACAGTGTATAAGGGGCACACATTCAAGAAAAGTAATGTGCAGAGTA TTATGAAAGGCCTTTAAAGGGCCTTTTAGAGAAATCAGCATCGTCTGATCAACTCTAAAAATATGAATTT TTACCTGTCTTTGATTTTTACTGGAAAGGCCATGAATATTGTATTCAATGAATTTGTGTACTTAATAAGA AGAAATGCAATAAGGAAAGATTTTAGGTTTTTAAAGCCCACGGTATCTTTCACTGGCTGTACAATTGAAA TCACTATATTTGATAATACATGCTGCAGGTAGAATGCAGAAAATTAGGAACAATTTTAAGTTTTAATGAT TGGTTGTACTCTGAGCAGTGATTCATTCACTATTGTAGCAAATACCATATGCTCCTGTTTTACTCAAATT TTCAAAGCAACAAATGATTGAGCTACCTGATATGAAACCATATTACATGTAAATTGTTAGCTGCAAAAAT GTAAAGTGCACTGAATCTAATGTACAGCACAATTCTACTATACTGAGCCAGATATTGATTTTACAATATT TGAAGCAATGTAGATGTTAGATTATGAAATAATGAATAAGCCAAGTAAGTCCACAAGCTGACCACTGTCG TTTTGATTTGAAGAGTTTTACCCAACCAAAAAGCCAAGAAATTGATTTCAAAGACACTCTTGTTAATTTG AATTTGCCCTCAAAGCAAGACAATTTAGTTCCGTGCCAAATCAGTGCATATGTTTGTCATTTTTTAATTC ACTTTTTTTCATTTTTGGTCGTTTTGATAAAGGTTTCGCAAGAGATCGTGAGGTAAATACTAAACACTTT TCAGCGAAGTTTAGATTAACATAAAATTCAAGTTTAAAGTACCCTAGGCAATGAGTAGGACCAAACCTAA CATCAACAATCTGTAGAATTGATATAACCAAAAAGATTAAGATGTCAAACACCTCATTCCTTTAATTTTG ACCTAACAATTGAACACCCCCCCCCCCTCTCATTTAATTGTGACCAAACAATCGTATTATAATTATCAAT GTTAATGTGAGTCTTGATCCCATCGTTAGATGTTTCAATTATTTGTATCTCACATTTTGAGACTTACATT CCAAAAGTGTTCCACTAGACAAATATGTTTATTAATCAATACCACAAAGTAGTAAAAATAGGACTGGGCT GTGTCTCAATTCATCTCCTTTTCATGTACTTAATTCTTGAGACCTGTCACAAATATTAAAAACAAGGTAA TCCTAAATGAACTCCGTATATTTGGTAATGATACTGTAGCCGCTTTGTTGTAACAGAAAAGGCACTTTTC AAGAAAAAGAAACCATTGTTACCTTATTGTCAAAATCTAACTTGCATCTACAATGTATTTCCTGAAATTG TGGGTAATATTTTTCTCCCTTTTGAGGTATTCTTTCGCTTAACTCTCTTATTTTTCTAGCGAATGATGAA GAACATATTCTGAAAGTTCTATCATGCATTTCAGCACAAATGGGCATGATACATATTGATATAAGCCATG CAGCTTTCAATATTTCCCTCATTAATGGATATATCATTTTTTTTTTATGGGTATGGTATAATTCAAATTT TGATCTGTTGAGTATTAACTGATCCGGAAACAGTGACATCCAGTTGTTTCTCAAGATATTGCTTTGAAAA AAATATGATTAAACAGAAGTTATAGACATAAGTAAGGATTAGAGTCCTGGAAATATACAGTAATCTTGCA CTACAGATATTTTTTAAGTAGGTAAACTTGTACTGTAGTGAGTAGATATGAAATTCAAAAAAAAGAAAAG GAATCTGGTTTGAAAAAAAACCAACACAGATTGTATTCTGATGATATTTTTGCACTAAATTTGTAGGAAG ACTGTACTTATAGAGAACAATTAATGTATACAGATATGTAAATGTTATGGATATTCCTCATGGTAGGGTA TTTTTTAAATGTACACAATAAAGCCCACCGCATACTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds