Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030990340.1 PREDICTED: Strongylocentrotus purpuratus rho GTPase-activating protein 27 (LOC105445543), transcript variant X3, mRNA TTTTTAACATCTTATAAGTAGTAATGTCTTGAAAGTGGAAAAGTATTTGGCAGCAGATTAAAATTGCAAG TTTCTTTGCAACCTCACAATTAAACAAGAATTTGAGAAATGCAACTCTATACATTCCTGGGTACATGTAC TTTTAGACCTTAACCCAGACTGTATGTCTGGGTTGCGGGCTAGATGGGTGTTAATTTCGACCCTTTTACA TGGACCCAACACCCTTCTGAATCTCAACAGACGATACATACATGTAAATGTAAATGTGTACCAACTGATC TTATCGTGAGGGAGGTGCTAGTAATTCTAAAAAATGACAGATATATCCTGTCGTTATGATAAAGGCTGAC AAAGCTTGACAAAGCTTGGCAAAATATAAGTAATCCTGCTACATACAACAGTACATGTACATGTCATAAC AGGAAATACCTTTCTGTAATCGACTCTCTCATCCTCATTATCTCCTAATAATGACATAGTTTTGGGGGAA ATATAAATAGTTGGCATGCTTGCATGTACATAAATACTTGACAGTAGTTCCTTTAATGACATGGGGTGAC AAACCAGTGGGACTCTTTTACTCACTGAATGGACTTTGCGACCTAGAGATTTTGTTTTTTCTATGTTGGG GTGCAAAAAAAAAAGTTAGTGAACGAATGGGGAAGTTTGCCCTCAAAAATACAGGGGTTGAACTAATCCA AAGTCTGACTAAGGTGCTACATGTAAATGTAGAGCAGACAGGATAGAGAGCGAGAGAGAGGTTTAATTAG TTAGTATAGGGAAGACGTGCAAGCGAAAAGCTGCCAGGAATCGGTGACGTTACCAGAGGCATCCTCTCTA TCAGTTACATCAGGTGAACGAGGAGACTCTTGCTTTGTTTCACCGGTTTGACGATTCCCCTCTGGATTCC TATCGCGGCTGACCTGTCGAGCAAGCCTGGTTGTTGACGTTGGAGAAAAGGAACTCGAGTCATACAAAGA GAGTGCTCAGGTGGAAAACTAGCTTAAACTTTGCAGTGAATAGACCGACTTCACAATTTTCCCAGCCATT TTTCTGCATTGTGTTGGTGATTTAGGTTCAGCTAGTTCCCTGTTGCAGTACACCTAGCCACTTTGGAATT TCGCAAATCACTTTGGAACTTGTTTACCAGCAGTTTTGAAAGGTTTTATGTAACTGTCATGTGCTCCATT TTGTAACTAGTACAGTACTTCATTACTTGTGTTTGAGGACAGATTGTTTGTTTTAAGTGTCGAAGGATTG GATATCACTGACATAACAGAGCTACATGTAGTGGCTTGACAATTATACATTTAGGTGTTTCAAAACAAAC AGGACTTTGGAACTGATTGTCCCAAGAATTTGCAATAAATGCAATAATATGTTTTTGCACAGAAGAGTGC ACAGGGCAGACGTTGTTTGAGAGCTCCACTGTGTGACACTACATGGATAGAGGAACTTGTTGAGGTACTA CTTTTAACGTGGACATGACTTTGGTAGGAATGGCAGGTGAACAGCAGCAAGATATTTCTGGCAAGATCAA AAGATTCGAGAGGGCTTCGATGAAATTGGAAAACAGAGGTCCCGAGGGGAAAGCCAAAGTGAAAGATGCA AACGACAATTACACCACTGAACTTGAAACCAAGCAGGATGGCATAGGGAAGAAGATTCAGCTTATGGAGG CGAGGCTTGGAAGCATCGATGAAGAAAATAGTCGCCAAGACGATGAGAAACCCAGGAGTCCCAGTGATGT CTTGTTGAAAAGAAGTCCAAGATCTGCCTCGAATGAGAATCTTCTGGCTGTTGGGAGTCCCGAACTTAGG AGAAAAATGTCGAGCCATTTCCTCAGAAAATCCTCAGCGCCTAGTCTATTAGCGACTGTTCCAGATGAAA GTAGATTTTCAAAAGCAGATGACCAAACAAAAGAGAAGGAACAGTTTGTCAGAGAAGATGTGCCACATGT GTTTGTGTTCCCCAGTGCTGACTCTGATAAGATCAAAGAGACTGAAGAGGGTCAGCATGGAGAGAGAGAA GGAGAGCATTTGGGTGGAGGACAGAGTGGTGGAAAGGACGGAGGGAAAGGGATGACAAAGAGGATTTCTC GCGTCAGGAAGAGTATGAGTATGAGGTTTTCAAGAAGAGAAAAGAAAAGCCACGACACTGATCACGCAAG CAAAGGAAAGAACGAAGCGACAGAGAATGAGGATTGTAAGCAAGTCGAGGAAAAAGACAAGTGCCAAGTC AGTATTATTGTTAGCAAATCGCCGAGTGACATCCCACCCAACAAGGAAATAGTGAGAGAACTGTCAAGTT TTAAGTTCAAAGGACCGAGACCCGTTGATGAACGTGGTGTTACAAAGAGCACGTCAGACAAGGCCACTCC AGAAACGTCCTTGATGGATGTAAATCCCAAGCAAGGCGATAGCGGAGATGGGAAGAAGGGTTTGGTCGCC GTGAAACCCAACCGTCGACGGAACCGTCAAATTCAACTCCCAGTGCCACCGTCCAAGCCTCCAAGCCAAC GCCAGACAAACAGCATCCATGAATATGACCTGATCAGTTTTGGTGATGACGGCGCCCAGGGTGTCCAGGG TGTCCCATCAATGATGAGCAGCGATAAAGAACAGGAGGAGAAACCATTGAACCCGGTGTATGCTACTCTG TGCCCATCTGATGAGGAAGAGGAGGGCAGCTCTGACGCAGATCCTGCAATCCGTGAGGACATCAAGTTCA TTGACACACGCTTCATCGCGAGCCGCACCATAGACAGAAAGTTCGCTGAACATGTCTACGAGGATATCGA CAAGGTGATGGCAAAGGTCAAAAAGCTGCCGGTTCCCGATATAGGAGCATATCAAGTTTCGAATCTTACA CACACTGATATAGAACCAGTTAAACCTGTAGTTTATGATGAACCCCAGGCACATATAGAAAGTAGCCCTC ATCATTCACCAAAACCAGTCTCCTATGATCAACCTGCTTCGTACACACCGACACCGAGCAGAGAGATCCC CCAGAACTCTGGTGGGGATGGCGTGGTCAAGAACCCTGGAGCCCGCAACTGGGCGCATCGGCTGCCATCA GACACCAGCAGCGGCAGCCCGCAGAGCTATGACGTACCCCAGACAGGTCCCAAAGGATCTCAGAAGCCCC ACCTAGGGTCGGGAAGAGGAGGGGGAAGCACGCCCCACAGTCCAACAACAGTTGTCCCTCCGCAAGATGA TCTGAGTGTACCCCGTGGTTGGAGAGTGGAACAGACTGTCACAAGAGACCCTGTTTTCATCAATGAGATC ACATCAGAAAAGTGGTATAAAGCAACTCCAACGCAGGGAGAGCCTTACTACTACAGTGAAGACAGGTCAC AGACACGCTGGGATCTACCGTCAGTGCCCTCTTCTCCTCGCCATCGCATGGTATCGGAAGGTGGAGGTCA AGCCGACGAGCCCAAGCTACCCAGCCAAAAGCTCCGCCAGGGGAAAGCGTCATCGGTGCGCCCTCATTCC TTCCACCCTCACTTACGGTCTTCCAGCCCCAGTATACCTTACGACGGCCGCTTTGTAGACGACTTGGAGT ATGAAAGAAAGAAAGATGAAATTAAGCGAAGATTTAATAATAGGATAAGCTTATACGCGCCGACTGAGAT GGAAGTGAGAGAGAAGGAGGGTATGCTGAGCATGGTGCTGATGAAAGATAGAGTGCCGAAGAAGAAGAGC CGGCCGGGGTACGCGGTCTTGGCCGGTTCACAACTCAAATACTACAAAGATCACAAGCACTATGAGCGGG ATGCAAGTAACCCTGAAGTGAGTCTAACCTTATTCAGAAATGAGGTTTGCTGGTGCAGAAGTAGAACTCC AGGAAAGAGATTAATCTTTGAGCTGTCTACCACCGATCAAGGTATTTTCCTGGTCCAGGGAGAGGATGAG ATGACTAGTCAGGCATGGTTTGAAGCCATCAGAGGAGCAGTTGGAGGTCGAACAGGGTCATCTTCCGACA TTCCCGAGGAACTTTATAACTCCTCGCCTCTGACACCAACTGGTTTGTCACCACCGGTTCCCGATGCCCC TCCCATGAAGAAGAGCAACAGTAGGATCAGAGAGAAACTGAAGAACTTCATCTTCACGAGACCCGACAAA GAAGACCTGAGACGCAAGGGCATCTTACAAGAGGAGAATGTGTTTGGGAAGGACATCGGGAAGTTATGTG AGAAGGAGAGGACGACGGTACCAGGCTTCGTCAACCAGTGCATCAGGTGCATCGACAAGAGAGGGCTGGA GTGCGACGGTATTTACAGGGTCAGCGGAAACCTCTCTCTCATACAGAAATTACGTTTCCTCGTCGATCAA GAGAAACCCATAGATCTGGAGTCATCACCGTGGAAGGAAGACATCCATGTTATAGCCGGCGCTCTCAAGC TCTACTTCAGGGAACTTCCGGAGCCACTATTCACCTTCAACACCTTTGACAAGTTTATAGCATCCATCAA TCAAATACCTGGTACTGATCAGAAGATCTTAGCATTCCGAGAGCTGTTTGGCGAGATGCCTCGCGTGAAC CAAGATACCATCTTTGCCCTCTTCTCGCATCTCAAAAGGGTCATGGATAACGTCCATCACAACCGTATGC CGGCCAAGAACGTGGCAACGGTCTTCGGCCCCACCCTCATGTGGCCCGAGCGGGAGAACATAAACATGGC CATGGCGACCGTCTACCAGAACCAAGTCATGGAGTTTGTCTTATTAGAATTTGACAACATCTTCCGGTAG TGAGCTCCGCCCGTGTTCTCCTGGACTTTGTTTTGTAGAACAATGCGGAAACCAGCATGTGGGACTGAAG CTAAGAGTCTGGCCAGAACTTGGCATGTGGCTGTAGCAATGTTTTGCTTAGCACATGTCTCCTATTCCTA AGGACGAGTATTGGAATGATAATTTGTCATAAATCAAGTTGCTCACACGTATGTAATTGTAATAGCTGAT GAACGTAAAAAGAGCCATTATCGCCATGTTTATCATGTTCGTGGACTGTCACCAATTCAAGTACACGTAC CAGGGACTGAATCCAGACTTCAATAGTGTGTAGACATTGCCAAATAAACCCAACTAGTTGATTAATATTC GCGCATCATTGTTTAACGATCCTCTGTTGCATGGAAATGTCTTCAATGGATAGTTTTCGGAGCTTCCGCA AACAAGACAACACCCAGAGGATACTGAGAATGGGAAGAAATAGATGGGGTTTGTATCTACAAGAAAGTCA TAATTTTAAGTGTGCACAAAAGTAACTGTACAGTAATGCATCAGTAGCCTATACAACTGATGGAGGCTTT GCAATTCATGTTGAATCTGTTCAGTTGACGAGACCAACGTTCCTCATCTCCTCCTTTGTTGGTATCACTG GAAGCATGGCAAATAGCCCAGAAGTGTGTGAGTCCTTGCTCATACTCAAGGTAGAACATTCCATTGATCA GCCTGCATTGTCGCGGTTGAAACCGGACATGGATCAAGCAGTGGGTAATATTAGTCAGGACTCAACGACA GCAAGACTGGTTCTCCTGTGGACCTGGGAGGGATCACCCACTGGGTGATCTGAGGAAAAGAATCCAGGGA CCCGTTTCACAAAGCTTTTTTTCAATGACAAATGACAAAAATCAACAAATGACAACCAATCAGAAGCAAG GATTTCAGTAGCTTATAACAAAAACTCTCATTTGCCACTGACAAGTTTTGTGAAAAAAAGGATCTCTGAT ACATTCACACTTGTGTGACAAAGGGGCAATGTACTAAAACTTGAAACAGTGAAGTTTTTAAAGAGTAATA ATTTTATGTTCTGTTGACAGTAATAATTTCATGTTTTTTTAAGAATATGATTCCTTTCGATGACAGAAAA GTTCCTGATGCTTCCGCAAAATGCTCCATCTCATCATGTCTTTTTAAAATGTCTTTCAAGAGAGATTTAT TTCATTGTATCGTATGTTTTCAGCAGCATGAGTGGAGCTGCAACTGCAGTCATTCAGCTCAAAAAGTTTA ATATTTTTTTGCAATGTTTTAAAGAAATTCCCTATAGTGGAAAATATATATTATGAGTTGAATCATGTGA CATATTGTTTCTTTCGTTATAAGTTCTAAGCATATTATATTCTCAATTCTATTTTTGTAATTCTTGAGTT ACTTGCATACAAAAGGGTATTATATTCACAGATTTATTCCTTTTTATGTTTTAAATGCATTTATGAATAA TTTTGCACAGGCTCTGAAGATTATTTGTTTTCCTTCTATTTAGTATGTTATTTCCCACTGATTCCCCCCA TATCCATTTTGTGTAATATTTACCTAGCTATAGTTTAGATACCTCTGCTTAAAGACATTAGTAGTTACTA CGGTATTTCCCTGCTTACTCACAATTTGGGACCTGTTTCACAAAGCCTTTTCTCAATGACAAATGGCAAA AATCAGTGACATATCTGCTTGATAACCAATCAGAAGCAAGGATTTCAGTAGCTAATAACAAAAACTGTCA TTTGTCACTGATGACAAGTTTTGTGAAACGGTTCCCTGGTCATGGATATGTTATTGAGAAAGATTTGATG ACTAACATGGAGAGATGCATGCATTCTGTATTCAGGAGCAAGAATTAGAACCCATGAATAGTTTCGGTTA ATCTTTCACTGACAATACCGATGGAAGCCAGAGGCGCAATTAGTTTGTAGGTTGGTCAGATATTTATCAT TACAATCAATGTCTCTTGCTGCTAAAAGAGCCACGGTATTCCCTTCTCCAAAAATATGCAGGCTGATACT TTTTTACGAAAAAAAAAGTCTTTCCAATTTAATTCCAACACTTTAAGTCCTTCGCATTTACAGATATAAA TCAGAAATGGAACGACAATACATTGTCATTTGAATACTGCTTGGTAGTTTTAGTCCGAACAAAATTCATT GTAATTAATATCAGTGACGATTTAAATACATAAATGCATGTTACTGGAACATCATTACCAAAATCCCTTC ATTTTGAAATTCATTCAACATCTCAATTTACTTATCGTATGGTTTGATAGTTATAAAATGTTCAGATTTA TTCATAAACTTGAAGCATAATTCATTTTTATATGTCCATGTATATTCCCATGTATTGAATTACATGTATA TTTATTTACTTACAGTGTACAGTGTATAAGGGGCACACATTCAAGAAAAGTAATGTGCAGAGTATTATGA AAGGCCTTTAAAGGGCCTTTTAGAGAAATCAGCATCGTCTGATCAACTCTAAAAATATGAATTTTTACCT GTCTTTGATTTTTACTGGAAAGGCCATGAATATTGTATTCAATGAATTTGTGTACTTAATAAGAAGAAAT GCAATAAGGAAAGATTTTAGGTTTTTAAAGCCCACGGTATCTTTCACTGGCTGTACAATTGAAATCACTA TATTTGATAATACATGCTGCAGGTAGAATGCAGAAAATTAGGAACAATTTTAAGTTTTAATGATTGGTTG TACTCTGAGCAGTGATTCATTCACTATTGTAGCAAATACCATATGCTCCTGTTTTACTCAAATTTTCAAA GCAACAAATGATTGAGCTACCTGATATGAAACCATATTACATGTAAATTGTTAGCTGCAAAAATGTAAAG TGCACTGAATCTAATGTACAGCACAATTCTACTATACTGAGCCAGATATTGATTTTACAATATTTGAAGC AATGTAGATGTTAGATTATGAAATAATGAATAAGCCAAGTAAGTCCACAAGCTGACCACTGTCGTTTTGA TTTGAAGAGTTTTACCCAACCAAAAAGCCAAGAAATTGATTTCAAAGACACTCTTGTTAATTTGAATTTG CCCTCAAAGCAAGACAATTTAGTTCCGTGCCAAATCAGTGCATATGTTTGTCATTTTTTAATTCACTTTT TTTCATTTTTGGTCGTTTTGATAAAGGTTTCGCAAGAGATCGTGAGGTAAATACTAAACACTTTTCAGCG AAGTTTAGATTAACATAAAATTCAAGTTTAAAGTACCCTAGGCAATGAGTAGGACCAAACCTAACATCAA CAATCTGTAGAATTGATATAACCAAAAAGATTAAGATGTCAAACACCTCATTCCTTTAATTTTGACCTAA CAATTGAACACCCCCCCCCCCTCTCATTTAATTGTGACCAAACAATCGTATTATAATTATCAATGTTAAT GTGAGTCTTGATCCCATCGTTAGATGTTTCAATTATTTGTATCTCACATTTTGAGACTTACATTCCAAAA GTGTTCCACTAGACAAATATGTTTATTAATCAATACCACAAAGTAGTAAAAATAGGACTGGGCTGTGTCT CAATTCATCTCCTTTTCATGTACTTAATTCTTGAGACCTGTCACAAATATTAAAAACAAGGTAATCCTAA ATGAACTCCGTATATTTGGTAATGATACTGTAGCCGCTTTGTTGTAACAGAAAAGGCACTTTTCAAGAAA AAGAAACCATTGTTACCTTATTGTCAAAATCTAACTTGCATCTACAATGTATTTCCTGAAATTGTGGGTA ATATTTTTCTCCCTTTTGAGGTATTCTTTCGCTTAACTCTCTTATTTTTCTAGCGAATGATGAAGAACAT ATTCTGAAAGTTCTATCATGCATTTCAGCACAAATGGGCATGATACATATTGATATAAGCCATGCAGCTT TCAATATTTCCCTCATTAATGGATATATCATTTTTTTTTTATGGGTATGGTATAATTCAAATTTTGATCT GTTGAGTATTAACTGATCCGGAAACAGTGACATCCAGTTGTTTCTCAAGATATTGCTTTGAAAAAAATAT GATTAAACAGAAGTTATAGACATAAGTAAGGATTAGAGTCCTGGAAATATACAGTAATCTTGCACTACAG ATATTTTTTAAGTAGGTAAACTTGTACTGTAGTGAGTAGATATGAAATTCAAAAAAAAGAAAAGGAATCT GGTTTGAAAAAAAACCAACACAGATTGTATTCTGATGATATTTTTGCACTAAATTTGTAGGAAGACTGTA CTTATAGAGAACAATTAATGTATACAGATATGTAAATGTTATGGATATTCCTCATGGTAGGGTATTTTTT AAATGTACACAATAAAGCCCACCGCATACTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds