Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038191811.1 PREDICTED: Patiria miniata DCC-interacting protein 13-alpha-like (LOC119721875), transcript variant X2, mRNA GTGACCCACATAAATATACACCGCGGGAGTAGACTGACCTTGAGAAAGTGGGTTGGGAAGTTTTGTTTTC GAGGTGAACTGTCTGTACGGCAGTACGGAATGTGGTGACTGACGGGTTGACGGATTCTTGCAGTTGTACT GTGCAAGGTCCATGCTTGGACTTTTTGAAGAAGACACCAGCCTTTTTACTGGTTATGTGAATGGTTTGCT GGCTGCTTGCAGGAGGGTTGTAGACTGTGAGACTGCGTTATCAGTTGCTATCCAGACACTATCACAGAAG CTTCAAGAATATGAAACATTGAATTTTCCCCTGGGCAGAGATGACAGTATTCTGGCTTCAACCCTCAAGC AGTTTGCACAGACAATGGAAGAGGTCAGCTCGGTTTACACAGCTCATTCTACTCAACTGAATGACTTGAT GGTTCAGCCATTGTCTTCATTTACCAACGGTGACTTGAGTGAAATCACAAATATGAAAGCACTCCAGCGA ATGATAGAACAAGAACACGACAATGCAATAGTCAAGTACTGCCGGGTCTCAAAGAAGAAAGAGAATGAGA CAAAAGCAAGAATAGATGCAAATGATGAGTTATACTCGTGCAGGAAGAAACTCTTACAGAATTCCCTAAA CTACTACAATTCTCTGAACCTCCTTCAATACAAGCGCACCACCAACCTGCTGCAGCCCATGCTGGGCTTC TTCCAAGCTCAGCTCATGCTCTTCCGTTTGGGCAAGGAGACCCTGACAAGACAGACGGAGGAGTATCTAG GCAACATCACTGAGAGTGTTCAGAGTGTCCATTCGGAGATGGGTCAACTATCTCAGCGATCCAGTGATAA GATGCAAGAGATTACTGAGAACTCCACATATTACTACATGCCTGAACCTACCCCAGACATGCAGATGCAG TCTAGACCAGTCAATACTGGCCTTAGTCAGATAGCTGGATATCTCATGATCAGAAGCAAATCTGGTTTGA CTCACCGATGGGACAGACAGTATTTCTTCACTCAAGGTGGCAATCTGATGAGTAATGCCAAGGGACAGAT TGCAGGAAGTTTAGTCCTAGATTTGGATGGCTGTACAGTCAATGCAGCAGAAGTTGATGATCGTCGCTTC ATCTTCCAAATCACCAGACCAGAGGACACTAAAAAGTTGGTTACTCTTCAGTGTATGAGTGAATCTGATA GAGCCGAGTGGATTACTACAATCCGTAACATCTCCAGTGGCTTCTACATGCCAGAGAACAAACACCAAGG TAATATCCCTCAAGCTCAAGGTGTTGGAGATGCACGATCACGAGCCTTCAGTGCCCCACCCACCGCAGGG ACAACTCATGGAGGGGGAGGGGGTGGGGAAGGTATCATCACTACCCCCACCGGTGGCACACGCCCCAAGC AGCCTATGTCTCTGTCCAATGTGCCCCAGAAACAACGAGCTGACAGTTTTCAGCACAGTGGCAAGGAGTC ATCCCGTTCAAGTGATACTAGCTGCTCAAGCAGTCAAGACATCCCAGCAACACCTCCACCATCTCCCCTT GATTCTGTGCTGTCCACTACACCAATCCAGTTTGATATGATCTCACCCAGTGAAGAGCAACCGCCTCCAA TGACCAGATATGCTCCACCCACCAGGGAGGGATCACAAAGGAGGATCAACCCATTTGGAGATAAGGAGCC GAGACCCATACAAATTGTAGGAAGTACTGATCCTGTGGGCTATGTCCAGATGTACTCGTTGAGGTTCTTG GGGTCAATGGAGGTCAGACGAGACAAAGGATTAGACATCGTCATGGATACCATCAGGAAAATCATGGCTG CCAGGGCAATTCATAACATCTTCAAGATGACAGAGTTGAACCTTGTGGTGACCAGCCAGTCTATAAGATT GCTTGACTCTGCCAAACAAGTAATCAAAGCTCATCATGATCTGACTGATGTGTCATTCTGGGCTGCCCAT CAAGAAAACAAAAGGTTATTTGCCTTTATAACGCGTCAGCAAGGGGCTAGACAACAATCCCAGTTCATAT GCCATGTCTTTGAAGCAGACGTCGGAGCAGAGGAAATATGCCAAGCCATTAGTCTGGCGGCCGACATCGC ATTTCAGGCATTACTCCAGCAGCGTACCACAGCTCTTGCAGTGGGTCAAGACAAGGGAGACTCACCAAAC CTAGGGTTAGCATCGAGTAGCCCACCAACCAGCCAGTTCAACCAGCCACCATTCCATACTAAGGAGCTGA ACCAAACACTGTCACAACAACCAGGCCATCAGACTTTGCAACCTAGTGAAGCCCACTTACAACTCGGCCA AGCCCAGATGCAACCTAGTCCAGTCCAGCTACAACCCAGCCAAACCCAGTTACTGCCTAGCCAAACCCAT TTACAACCAAGCCAAACCCAGTTACTGCCCAGCCAAGTCCAGTTACAGCCCAGCCAAACCCAGTTTGAAC CCAGTCAAACCCAGTTTCAACACAATCCACAAATACATCATAGCCAACCCCCAGCACATCCCAGCCAGCC AAGTGGGTTCATACCGGTTCACACAATGCCCTCAGTGGATCCACACAGCAACCAGCATTTTGCGGGGCCA GCTAACAACTCCAACTCTAACAAGAACAACAGTACGTATGCCGGGTCAGCGTACGTACCCCAGGTGCCCA TAGCGAGTGGGCTGGAAGGTCTGAATTTAGGCAAAGGTGTGGAGGGAGGGTATGATAACTCCAAAGCGCT TGATGAGTCAGATGCCTAGAGGTACAAGGAACTGCTTTCAGTAGTTAGGAATTTCTTAACTTATGAACTC CTTGTGATACTTAGTAAGGTGCTTTTATAGCCTACTGTAATTTGAAAGCCAGGTGAGGGCACCAACTGCT TGCACAAACGTGTTCATGCACAATATCAAACTTGACATTTCAAAAGTGCAAACCAACAGTGTACGGCTGT ACGCCTCAATTTCTGATTGTGGAACAATTGGTAGCATACATGTACTTGCACAACTGATAGTAACTTGCTC AATAGAATAGAGTGAACAAGGTGACGATTAATAGTTTGTGAACGAATTGCCAGGGGTCAGGGTTCATTCT GTTAAATACTCATGACACTGACAAATCAGATTGTACAGTCATCCGTGTATACATTAAATATTGTAGCTCT CTGTTTTAGAGTAGCCATTGTTTATACATAATTCTCATTCCTTATTTTCAGTTTTAGCAGCTTCTTTGTA TTTTTGAATAAATAAACATTTGAAAAATACTTTTGCATTATTTTTGATCTTTGGGTGACCTACTTACATG TATATATTTTGTATCATGAGAAAAATGGAGTAAAATACCGTTTCAGTGAAAAGTTGTAAATATTTGGTGC CTTTGCTATCAGTCAATATTTATCAGGGAATGATGCAAAAAAAAAGATAAGACCAAGAATTTAAAAACCT ATTGTTCTTACATAAATAGCATTGGAACTCCACCATTATAATCTTAGTATGATCTGCACATCAAGATGGT ATAGTGACCCTTTGCAATACTAATTCAATGCATTCTTATGTGTGCACAGGGACAGCTCCACTTTCCAAAG CAAAATTCATTCCAATTCAACACTTTGTCAGCTAATCTTAGGACCAATGTACTACACAGAATTTGTGAAG AGGTTTGGCTTGGAACCAAATTTGAAATAGTACAGGCAATGTTTCGGGTCAAGTGTTTACCATTCTTAGA AACTGCATTGAACATTTAGCACCAATACCTCTTTTTGATTCTCTGTTTAGATTTTCTTATTTTCTTTTAG AAGAATTTATTTAGCAAAGTCATTATCACATTGTATGTTTGATAAACAATTTATAAATATAATGAAGCAA GCTGTTGTTGCAAGGGATTTGAAATTACATTTTTACATAACTCAGAACAAGTTCAGTGATTTTAAAAAGC TATATTTTACAAGGTAAATAATGAGTAATTGTCAGTTTAATAATACTGCATTGTCTGTACAAAAAGTATA TAATTCAATCAAATTGCATATATTCTGAAATAGCTGTCGTACAACAGAAGAGCTAAGCACTGTTGTTACT GTAAATGATTTCACAGAAAATGTAACGTGACGGTGCCTGAACAAGCAAGGTATGAAATTGAAAATGGATT TACACACAACTGTTGTAAATAAATACATGATTTGGAGCTATAAATCTATAGAATAAATAATACGTTTAGA GAATTGATTGGCAGTTTTAAAGGTTGTTAGGTGTGCAGTCATCAGGGCTCAATTTCGTGGCTAATATCGT AAGTGAAAAGTCCATGCAAACAAAATGGTTCACCAACGGGTAGCGTATCTCATAGTCAAGCATGGAATTG TGCATACAGGGTTAGCAGAAATGTCTGTGTTAGTGCTGTAAGCACAGAAGTGTGATCACAAGGGCAGAAC TCTGTGGTAAACAAAGCCATGACATTGGGGCCTGGAGAATATGTTTGACATCAAAGGGTGTACAGTTAAC GTTTGTGTTCTCTTCAGATATCGTGTAAAATTTATTTTCCGTTTGTCAAACAAACTTCTGTAGTTACAGG AATAAATAACCAACTATTCTAAAGACTGTAATCTAGCTTTTTACCATGATTTTTTTTAATGATACCCAGA CCACCAATTTCTTGGCCTAATTATTGACTGCCCAGATGCAGATAAACATGTTGAAGTCATGTATAAAAAT AAATGCCGTCAGTGATATGCTTTATTGTGCCTCAATATCAATAACATGGAATGGTTGCAAAATAAACAAT GTATATTATAAGATGATATAAATTGAATAAAGTCAGCATATCTATTTTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds