Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041619674.1 PREDICTED: Lytechinus variegatus uncharacterized LOC121424084 (LOC121424084), transcript variant X4, mRNA CCTTCTTCTCTTGAGTTGCATTCAAACTTGGATTCATGACATTTGCTCTGCTGTGAATTCCACACACTTA TGGAATCGCCAACTTCAACCTGGGATTTAATACTGCCCTATCTTAAACCTAGAATAAATCCCTATATCTT TTAAGAAATTAAGCCCGGAGCAATGAACACAATTGTGTCACCTTCAAACTCATCTTTTTCTGAAACAGGC TCCAGCACTTACCCAGGAGTTTATTTGCATAATCGTGTTTTAGCTTCATGTTCTGTAATGTTCATCTTAT TTCACCTCCATACAGACCTGGCTGTTTTTAAATATCTACCTTTCTACATTGTACCTTCCACCTTTATATT TGAAAAATATTTATCTTCACATGTCAGCCTTTGAAATAAGATGCCTGTCGATCTCCCAACGTTGCATAAA CAGATAACTTCATTGAGAAGAGCACTACAAGGAGAGTCAAAGTCCCATCCCGTACCGGAGGCAGAACTCT TGAAGTGAATGTGAACTGCCCTCCTTGCAAATCCAATACTGACCTGTTAACATCATGCTATCACTTACCT CCTTATCAGTCAGTCTGCAACCGCACGTTTTTTCGAGTAATTATCAGCTGATGCACTTGCAAACCCAAGT GTCTGCAGATGTGATTTCATTATTCTTTTGAGATATTGACTCAAGTCTAAGTTGTGAATATTATTTATTA TCCAACCTTTTACGTTGGAAGTGGAAATATTTCTCTCTTTACTTGAAGGATGTGATGACAATGTTTGTCC ACCCAAGAAATATGAGGAATATAATCCTATTTTTGCTTACTTTTCTGGCCTTTATTGCCTCAGGATTTGG AGGGAGATTCATTCACACGTGTGATGGATCTTATAATCTAGCATGTGAATACAGATACCATTACGATGGC CAGGTTCTCACAGGGCTAGACGGAACAGAGACTAATGACTACTCCGGTCTTAAGATTTCTGCTGACATCA AGCTCACACCACGTCCTGGAGAGCACGTAGTTATGCAGATGAACAGTATATCAATAACGAGATTACAGGA TGAAGTCAACAATCCTCTACAGCTTCAAGATCCTGCTTTGTTCCTACCTGTAGAGGGCGCCGAGGCCCAA CGTCTCAAGGAAGAGTTACGCCAGCAAACAGACTTCTCATATGACATGGGCCAGGTTGATGTCATTTTCC ATCAAAAAGACGAGTCGCTGACTTCGGTGAACATCAAACGGTCCATCATATCTCTCCTTGTCCTTGATCT GAAGGGCGAGTCGGATCCAGATTCTACGTTAACCGAACAAGGCCAGAAGACACTCTACACTGTTATGGAG GCCGGGGTTGCAGGGGAATGTGAGACTGTATACAATGTGAAGCCTTATGATGTGGAGGCCAAGCTCTTGA CCAATGATATATTACAAAGTGGTCAGTACAGACTCAACGTCACCAAAACCCTTAACTTCAACAAGTGCCG TGAAAGACCAGTGCAGCAGGGTGCGTTCCTTCTGAGTGGGTTTTCATCAGATCCAAGACTGAATGCAACG CAGAACCTGGTAGATTCCACCAGGGAGGTGTCATATTCTGTAACGGGTGATCGCAAGGGATTCTTGATCG ACTCTGTTACCAGCCATGAGACTCACTCGGTTAGACCTTTTGGTGTTGATGGACCAAGCTTCTCTACTTA TATAAGGCAAGATCTGCAGCACACTCGATCCAAGGTAGTTAAGAATGCGGACAATAGGGTTCCACCTTTG ACGGCTTCTGAGCGGCTTTTTCCTAGACTTGTCTTTAAGTTTCCATCAAGTGATACGACTGAATTCACTA ACCAAGAGCTCGTGCAAGTCTCCAATGTGATCGCCACCCTTGTCCAGGGCATTGTTGATGGCCTCGGAAC AGAATTTATTTCCAATGACATTCCTGGAAAGTTTGCTGACTTGGTAGAAATCTTACGCAAGACGCCTTCT TCCAAACTCTCAGAGTTAATTAGCTTCGATACCCAGATGAGGGAAGAACATGATAGGCAGAGGAAAGTGA TTGAGGATGTCCTACCACTTCTTGGCACGGAGCAGTCCGTAGCGATCATCAAGCAGAAGCTAGCCAATGG TGAGCTTAGTGGTGAGAGAGCATCTCAGATTGTCAGCATGTTAGGATTCCATACAACCTTTGAAAAGTCC TTCTTGGATAGTGTAAAGGATCTGTGTGAGAGCACCAGTAAGCATGAATGTTGGCTGGCCTATGGTTCAC TTCTCAACAAGGCCTGTGGAGAAGGGAATAGCCAAACGTGGTCATGTGATGGTAGTGTGCTCACAAGCTA TGCAAAGCCTCTTTACAATGGGACAAGTGCCATGTTTCCTATATCTAAACGACGCACTTTCCTCAAGGCT CTAGGCAACGCTGGACTCAATGGTCAAGCTCAGTATCTCAAGGATTTAATCAACGATCCAAATGCTCGAT GTGAGCTGAGATGCCAGGCTCTCTACTCTCTCAGGAAACTCACAGGGACCACCTCAAGGAAATATGTCAT CCAACTGTCCCTATCCGTCTTCACCAACAAGGAGAACAGTGCTGAGGTGCGGATCGCTGCCTTCGTTTTG CTTATGGATGCTAGACCCGATGCCACCGTCATGATGATTGTAATGAACAGTCTGGAATCCGAGACTAGCG CTCAGGTCTCGAGTTTTGTGTTGTCTCATTTTGAAGCCTTGAGCGACCCCAGCATGCAAGTCCCAAGTAA TGTTTCAAACCTTGCTAGGACCCTCTTGAATGAAGCTCCTTCAACCGACTATGGCATTCAATACTCTAAG AGTTACAAGATGGGCTTTGAGTCAGTGGAAGATGAACTTGGAGTTTTTGCCAACTTGAAGTACATCATGG ATGAAGAATCACCATTTACCTCTGGCATGGCAGCCAAACTGAATGCTCATCTGATGGGATTTAGTCTTAA TCCTCTGGAGATTGGATTCAAGACGGAAGGGTTAAGAATACTAAAAAAGATCTTCATGGGCGAAAGAATG AGAGAGAATATTGATCCATTCCTCGAGGACATAGATGAACAGCTCAACATGGTGTTCCGTGGAGATTATG ATCCTTTGGTTAGTCTCTACATGAAAGCTTTTGGAAGGGAGATCAGAGGAATGAATATTGACAAGAGTTC TATTTCATTCATGAACCGAGGGAGCTCTTTCATCAGGCTTCAAGAACTGATGACCCAACCCCACATCTCT TATCAGAAGGCCATGTCCCTAAGTGAAGGACACCTATGTGTCCCAACCTCCTTTGGTGTCCCGTTGACCT TGAAACTCTCCAGCTCTGCCGTCGCAGCTCTTGATGGGTCCGGAACCATCACTCTGGATCCTCCACTTGA AGACCTCGTCCCCAACATCCGTTTGCCAAATGCAGTCAGTATTGAAGGATTTTTTAATCCCCGTCTTGCC GTTGAGACAGTAGGGGACATTGGATTGAGCCTCGGTGAATCAATCAAGATGGGAACTGCACTGAAGGTAT CTATAAACTCCTCTCTATACCTTGATGGATCCATCAAGGTTGATCTCCAGCGTCAAGACTATTCAGTTAA TCTTACCACTCCGCCAGGGAACCGACAGCTGTTTTCATTCAAGAGCAAGCCGTTTACCTACTCGGATGTG ACAAACTCGATATTTGAAGAGACTGGCCAATCTCAATTGAGTATTCGAGAAATATCGAGTGTGGCAAAAC CAAATCCATCTAAGTTCAAAATAGATGCTCTTGGAGTAGGAGTTGGTGTTTCATTCTTCCATCCATCAGA CAGGCTCTCTCCATACTGCCTCCTGAGGGGTCCAATGCAATTTAACATCAGTATCCTATCGGGAAAGACC ATGCCCGAAGAGATTCAGCTTCATCTGCGCATCAAAGACAAATATGAAATGGTTTTGAAAGATCCCCATG GTGAAAGATATCATCATCATCATGACTCTCCATACATGTGGAATTTAGGAACGGCAGAGAGCAGATGGAT GTCACTTAACCACATCAAAAAAGTGATAAAAGACCATGGTCTTCATGACAATTACCACCACGGTCACCAC AGTGGAAGCGATGAACATCATGGACTTCTGGGAGATTATCATCATGGTCACCACAGTGGAAGCGATGAAC ACCATGGTCTTCTAGGAGATTATCATCATGGCCACCACAGTGGAAGTGATGAACATCATGGTCTTCTGGG AGATTATCATCATGGCCACCACAGTGGAAGTGATGAACATCATGGTCTTCTGGGAGATTATCATCATGGT CACCACAGTGGAAGCGATGAACATCATGGTCTTCTGGGAGATTATCATCATGGCCACCACAGTGGAAGCG ATGAGCATCATCATCATCACTCTGAATACAATGTTACAAAAGTTGAGGAAACACACAACCACACCTACCA CGTACATGTTGATGGCAACATTGAAACAAGAACATATGAGCACACCCATCCTGTTTACAAAGTAGACCCA GTTCCTGTAAGAAAAGCAGGATTAGATGAACATCATGGTCTTCTAGGAGATTATCATCACCATCACCACA GTGGAAGTGATGAACATCATGGTCTTCTGGGAGATTATCATCATGGTCACCACAGTGGAAGTGATGAACA TCATGGTCTTCTGGGAGATTATCATCACGGTCACCACAGTGGAAGTGATGAACATCATGGTCTTCTGGGA GATTATCATCATGGTCACCACAGTGGAAGCGATGAACATCATGGACTTCTAGGAGGTCATCATGGTCACC ACAGTGGAAGTGACGAACATCATCATCATCACTCCCAATACAATATAACAAAAGTAGAGGAAACTCACAA CCACACCTACCACGTACATGTTGACGGCAACATTGAAACAAGAACATATGAGCACACCCATCCTGTTTAC AAAGTAGACCCAGTTCCCGTGCAAAAAGAAGGATTAGATGAACATCATGGTCTTCTAGATTATCATCATG GTCACCACAGTGGAAGCGATGAACACCATGGTCTTCTAGGAGATTATCATCATGGTCACCACAGTGGAAG TGATGAACATCATGGTCTTCTAGGAGATTATCATCATGGTCACCACAGTGGAAGTAATGAACATCATGGT CTTCTGGGAGATTATCACCATGGTCACCACAGTGGAAGTGATGAACATCATGGTCTTCTAGGAGATTTTC ATCATGGCCACCACAGTGGAAGTGATGAACATCATGGTCTTCTAGGAGATTTTCATCATGGCCACCACAG TGGAAGTGATGAACATCATGGTCTTCTAGGAGGTCATCATGGCCACCACAGTGGAAGTGATGAACATCAT GGTCTTCTAGGAGGTCATCATGGTCACCACAGTGGAAGTGACGAACATCATGGTCTTCTGGGAGCTTATC ATCATGATCACCACAGTGGAAGTGATGAACATCATGGACTTCTAGGAGGTCATCATGGTCACCACAGTGG AAGTGACGAACATCATCATCATCACTCCCAATACAATATAACAAAAGTTGAGGAAACACACAACCACACT TACCACGTACATGTTGATGGCAACATTGAAACAAGAACATATGAACACACCCATCCTGTGTACAAAGTAG ACCCAGTTCCTGTCAAACAAGCCTCTGACATCAATCATCATCACAGCCACGAACATCATCACGCATATGA TACCTTTAAAGGGTTATTCCCAGCTGACCTAGCGTCTGTTACAGAAGCAGTCTTGAATAAAGTCCCTGAT AGACACTCTTGGCGAGAACATATCAGAAGTTACATATATTACTGGTTTGGTAGATCTGAACAAAGTGGAA GCACAAGACCCCCAACGCCAACTCTAGAAGACAGTGTTACCTCAAATCCTCCAACCAAGGATAATGCATG GCTGCAGAGGGTAGTGGATATCGTGAATGATAGATTTGGATTGTACCATTTCCAAAACCATCAAGATCAT GACAGCCATGAGCATGGGCACCACACCCATCACCATACAGATTCCAATCATAGTGTTCACCACCATAGCC ATTACCACAATCCTCTCACACTGAAGGAAGCTTTTGACCGGGTCTTTGGGAACATGGATGCTAGCAAGTA CTCCAAGATCATCACCAGGAACTTCTTCTTGAATATCACAGCTAAAGGTCAGAACTCCAGCAATGACCGC ACAGTCATGGTGAAGATCAATACTGACCTTCAGGGTCGCAGCCACAAGTCTGTCAACATGCAAGTCTTTC CAGCTGTCCAGTTTCCTACAGAGGTGCAGGACCCTCAGAGACCACTTCCTTACAGTTCTCATTACCACCA TCACCACAACGACCATCATTTTGAAGACCAGAAGCAGGTATTCTGCTTGCAGTTTGATGCTGATATTTCA TCTTCAAGGTCCGAGGCATCCAGCCAAGGCCCAGTGCCACTCCACCATCATGACTCTCATGGCCATGATT ACCATGATGTCTTCCACCATGGTGTCAGGAGTGGGAGACCTGAACTAGATTCGAATGACACCACCCCAGA CGCTCTCCATCACCACCACTACCATAGCCATAGTGACGAGCACCATGATGTGCATGTCCTTGGAAACCTT CAGCAGGATCATCTGCACCACCACAGCCATAGTGACGAGCATCATCATGGTCATATCCATCCAGCCATCA ATACGTCAGATCCCCATGCCCTCCATGACTATCATCATCACGATCACAGTGATGAACACCACCTTCCACA TGACCTTCATGACGTGCCATACCATCACAGCCATAGTGACGAACATCATGACTATCATCACCTCAATCCA TCCTCTAATGTCTCCCATGGTCATCCACTACCGATCCTCCATGGACATGGACCTGGGGCGCAGAGTGGAC CTCAGGCATTATTTTCTTTGAAGATGGGCTGGGGTAGAAGCTGCTCTATGGACAAACAGGTTCAGTTGAA GGCCCTTTTTGAAAGAAGTAAGAGCCAACAAAGTGCTTTGCATGCAGATTCTCCATCTCCTAAGTCAGCT GCTGACATGAAGGAGCTTCGAGCCATGCATTTCAGCTTTAGTCATCAACATCTCCCTTATGATGTGCAGG CTGGAATATCTAATGCCATTGAGAATTTGAAGCATGCCATATGGAACAAGGCTGAAACAAAGACTTCTGA TGGTACAGACCTACATGGACAGATCTTGCTGTCAGCTGTTCTTGACGACTCCTTGGAGAAGGTCAACTTT ACCATGTCTGAACCTCACGACCTGGTGAGATTCAACAATGTCAACCTCCCTTTCAAGGTCACCCCATATA ATATCAGGAAACCCTACTTTGATGCAGTCATGAGCACGGCAATGAAGCAGCCTTTCTCTCCCATATGTAC CCTTTCAACTGATGGTCAGATAAGCACATTTGACAATGTTAGCTACCCATATGCCTGGTCTGAATGTGAA CATGTGGTGGCTAAGGATTGCTCTGTACAACAGAGATTTACAGTACTGGCCAGGAAGCTAGGTGATAAGA AGGCAATCACAATCTTTGCAGGGGATAACAAGTTAGAGTTGACTCCATATGAGCAGTCTGCCCTCATGAG TATCGTTATCAACGATGAGATTGCTACGCTTTCCAAACGTTCCCAACTTATCTTTTATGATGATGGAACA AATGTTACAGAGGTTTTGGAGGAAGGAAAGGATCTACGAGTCAAGGCACCACGCCCTCAACTGATTGATG CGACAAGGAGATACCTTGAGTATGTAGAAGAGAAGGCCAAGCAAGAAGAGGAAACAGCTCCTGCAGAGGA AGGTAGAACTGTCCATGAGATCTTGACTGGTCATTCTGAGGATGTCCATACTCCTGACTCTTCCCAGACC GAGAGTCACCATCACCATAGTCATCATAGCTATGATAGATTCCGTAGTGACGACCTCTACTGGGGAGGTC TGACCCGCTATGTGGAACTGGCCCTGAACGATGAGGAACAGGACTTTGAGAGGTTCTACCAGCCCCTCTT GAATGGATCCACGGATGCCCCTCCTCAACCAAAAGAGACCCTTCGTCTTCTCAGGATGGAGAACAGGTAC CTTGTGATTGCCAAGAATGAAGGACTTGCTGTGCTCTTCAATGGCTCCAATGTTAGAGTTCAGATTGCTC GTCGCTACCAGGGACTCCAGTGTGGTGTCTGTGGTGACTTCAACGGAGATCCTAGACCGGATATGGAATT CATTGGACCAAGTAAACAAGCCTATTCTAACGGGCCTCAGCTTGCTAGATCCTATCAGATAGATACACCG GAGTGTGCAGGAGGAGATAAATGCGTTCCTACCCTGACAACCGTGACTAAAGAGGACATCGTTCTTGGAG ACTCTGAATCCTACACCTGCACCTCGTCAGTCCCGCGCTGTGATGAGAGCACGTGCGAACCAGTCGGAGT CATCCCTGTTCCCGTCAAGTTCAGTTGTAGCAGAGAAAAGTGCAAGAGTTCAAAGTGCGTCACTTTCACT GAAAAGATTGAAGGTTCCCTTGATATGCACACTGAGTGCATTCCAAGGTCATAGGTCATTCCAGTGATTG AAGCGTGTAAAAAACTTCAATAGTATTCTAATTTCAAATAATATTCTAATAGGGCCTTGCCCACTTGAGT TATTATATTACTTTGTAAGTTTTTAAACCCATTGAAAAAACCCCCCCAAAAAAATACTAACATGGAGGTA AAATGGGTTAACATCAGCCACATACAGTATTTGAAAATAAAATCCCATTGAAAACAATATGATTATGTGT GTACAAATTGGATTTAGAGGCTTTGTCAACCCCCCCCCCCAAAAAAAAAATAATTGAAAGATGGAGGTAA AATGGGTCAACATCAGCCACATACAGTATTTGAAAAAAAAATC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds