Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT095637.1 TSA: Strongylocentrotus purpuratus WHL22.641501.1 mRNA sequence ATCGACGAAATAATCTTTCCAAAATGTTACGTCATCTAAACTATGACCTCGGAAATCCTATCTTTGGTCA CCAATGGCTGGCAATGTGTGATCACCGGTTCGTCACATTATCACCTAATTTCGACTGAATTTGATCGTCG ATTTTGCTGTTAAATGATGGAATTTGAATGCCTGTCGATCTGGTGTCCTCTCCTCTCTGAGACCTCTCCA GACATTGTGCACGCCCTGACCATGACCACCACTCCAACCATCATGGAGTAGGCCGAACTAAACAAGACGT GTGCAGGGGCATTCTCACATATGCCGTCTAGCATCATGTGTCCACTGTACTGTCTGTAGATCACCCCTAA TCTCTCATATTATTCTGAAAGAGAGAAGGGATTAAGAGCCAAAGTAGAGAGCAAAAGAACATCCAAAGAA GTTCATATTTTTGTGGTTGCTTATTTTTTTTGGAAGAGCATATTCAGGAAAAGAAATAATACTTTCTCAG TACCTGTTTTTAAAAAAAAAAGCATTCACTAGAAACAAACAGGCTTTTCGATAATATTTTTAGGTCAGGA CATCTGAGAAAACAAAGATGGTAAAATGATTTTGTTTATGGATTAAGAAATCCAATAACTTTCAATGATT CTTCAAAGCCCTGCGGCCACTCCCGTCAAGATGGCTTCAACGACGTCCGTCCAGAATTGGCTGGGCCAGG AGCTAGAAACGAGGGGCGTTGACGCGGTGGTTTACACCCGCTACATCCTGAGCATCTTCCAGCAGGACAG CTTCGACCTGGAGCAGGACCCGGAGCACGTGGTCGCCGCAGCCCAGCCTGTGGTCCCGCCGGCACCCCAC AACCTGCACCCCAAGACGGGACCGGAGGGTGGAGGAGGGGGCGGAAGCAGCATTACCCATGCTGGCAACC ACCACCACCAGGCGCTACCGGGCAGGAAAGAGAAAGGGCGGGGTCGGTGTAAGGGAAAGAACCATCACCT TCGATGGCAGACTCCGGAAGATCTGAAGAAGGATGCCGTGGTGAAGTGCCTCCAATCTGTTGCAGAGAAG GACTGTGGAATTGAGGGCCTTGTCGAGGAGCTGTGTCTGAAGCTGAAGAAAGTCCAGGAGGAGAGGGAGG AAAACGCCACACCCCCACATTCTCCGGACAACAACTCAGAGAAGTCCACAGAGAGGTATTATGATGCCTT TCCAGCTTTGAGCGACAAGTCTGGAGCTGTTGCAGCAGACACCAAACCAAAAGGTGCATGGAAATCTAAA GCCAAACGCAACAACTCAACAGGCTCTATCTCCAATCCTTCCAGTGATCGTGAACTGGAGTCGCTGCCGA ATAAGAGTGTATCTGCCTCGGTCTCTCGCAACAGTCACTCTCCAGTGGATTTCAAGAGCAAGCAGTACCA GCGAGCTCAAAGCCTTCCTAGCAGCCTCTCACGCAACCAGAACAGGAGTCCCACGTTCGTTGTTCCGAAG TACCAGGGACGCAAGGGACACCATCGCAACTACGGCCACAGCCAAGACAAAGGCACAAAGCGCTACCAAC GAGACTGGGATTGGGGCAGTCGGGGTGAAAGAGTAGATGGCAAGTACAAGAATGTGGCCAGCAGGAAGAA AGGTGGCATGTTTCCCGAGTGGTACAGTGAAAGCGGAGAAGGTCAAGCTGACTTGAATCTGTTCCTGGAC GCAAGGGACTTTGGAGCAAGAGAAGAGGCTAGTCAGGACGTGTTCCTTGAGGCGATCGGTGACAGTGCTG TCAAGGAAGAAGAGCGTCTGGAAGAGGCAGTCAACACGATGGCTGAGACCCTGTGTCGCAGCATCATGGA GGAGTGTGACGATGACAAGCCTTTTTCCAAAAGCTTAACTATCCATGGACTACTGACTGATGAACAGGAC ATGTATATGTTTGGAAGTGGGGACAGCTTGAAGGATTGGTACGCAGGTTCCACAAGAACGGGTGACTTCG AACGTGAGGTCAGCATGGCTCCCGTAGATGTCGATGGTCAACGCAAACTTTCATCATCCATCTGGGAGAA GAATCTTGTGCCAGGGAGTCCATTGTGTGAAGACCAGCAGGAGCCCTGGGAAAACAATGCAAGATCTTGC CTGCCTACTGCTAGCAGCCCCCCAAGTACATCAGTATCAAGTGGTGCAGTTGAAGTCAGCCAAGCTGGAA GTGATCCAACCAGTCCAAGTAGCCTGCAGGGCGATTCTGCACTTGAGGAACCTTCTGATGCAACATCGCT TACAGGAGAACTGAGAGTTGACATCAACCACCATCATATGGACAGTGCTCCCATCTCGCCACGCAATGCT CCCATCGGCACTGGACGCAATAATGACAGTCTCCTGCGTATTTGTGACCACACCCATGCACACTCCAATC CGTATGATCCACAAGGACCGGGCACTCCCTCAGGATGGGGAATTTCCACCGACGGCTCCCAAGGACCTCT GCAGTCAACACCTAGCATACCAGGCCTACCAAGTGACCAGTCCTTCAGTGCAGATGATGACAGCATAGTA CAAAGCATTTGCTCATCTCACAAAGATGGTTCAATTATGAACCTCTCGGGTGAAGCTCACTCCCTGGATA TGAATAATGCTCTCTGGGCGACGTACGAATCTAAACAGCTGCAAGTTCTCCCTCCAAAAATCGTGACGTG GGACGAAAGCATATTCTCAGGATTTCAACCCATGGCTAAAATGTCTACGTTCATTGAAGGTGGTGTCTAT GGCAGCCCATACAGCAGTCATAACAACAGTCAGTTCAACAGCTGCTCTACCAGTCCTTGTAATGACAGCA GTATAAGAGAACTCTGGGAGGGCTCTCACAACAGGGACACAACATCATCTGTGTGCTCCCTTGAATGTCT GTTGAGTCCTCAGCCATGCGGGGCATCATGCTGCTCTGTCCAGGATGAGCAGAGTGTCATTGAAGACAGT CTTGTGGACAGCCCAAAGTATCTCTGCTCCCGAAGCTCATCCCGATTTGACTTTGCGAGAAGTGATGCTG AGAACAGCGACAACTCTGCTGGAACTGAAACTGATGAGATGATTTCGGAAGATGAATGGGTTGAGGAAGT TCCAAGAGATGTGCCTGATGTAAGCAAGAGGGGAGATAAAGATGATACAGGGGATCAAAGCGACAATGAC CGTACTCCAAAGGACAAGTCCCCTGGAGTGATCCATGAAGGAAGCATGAGCAGTCAGCAGGGTTCTTCTG CCAACAGCCAGCAAGGCTTCTGTGGAAGCTCTCTAGGATCAGGCAAAGGCACTATCGTCAGTCAGCACCT TCTGTCTGCAGACTGGAAGAAGCATCAGGGAATCTCTTCTGTCAGTCCCGACAAATTACCTTCTGTTTCA TCAAAGGGCAGTGCTGAGTTGACAAACTTATCAGAACGACCTTTCATTTCAGAAGATTCTCACTTCAAGC CAATTCAGCATGAATCCAAGACAGAACCGCCTGGAGTTTCTTCCGACGAGAATGTGGAGTTTAAGCCTTT CGAACCTAGGAAATACACCCGAAGCACGTCACAACCAGGTGGTCAGAACTATGGCACTTCTTCCCATCTT TCTGGAGGTAATGTAAGTAACTTGTGGAAGCCAATCCAAGGATCTGCTCCTCAGGGTTACCTCTCCGGTG GGAACCAAGGTTCCCAACCCTCCAAGCCACCAGAGGACAGCACTGCCAGAAGCACCAGCCAGGCATCACA GATACATCCAGGTGGACTCTATTCTGGTGGATTTTCAGGGTCAGTCTCAAAGACCGGCCCTGCTTCAGGG TACCCTGCCCAACCGGGAGATCCTGGAGGCCTTTGGAGGTGTACCTATCCTGGAGGAGCTGGAGCTGATA TCCGAGACCCAGGGGGTGGCCATGGGGGAGGAGGAGGAGGAGGAGGGTTCATAGCAGACAACTGGGGATT CTATGGAGGCAGACCGCTTGGAATGCAACTTGACCACGATGCACCGTTGCTGTACCAAGATGAAGACGAT ACCTTTCTTCATGAGGGACTCCTGGTAGACCAGCCGTTGGAATCACATCCTCCCCAAAGATCTCAAGGCA GATTCAAGAGAAGAAGTGGGGCCAACAGTGTCTGCAAGGAGTTCTTGGAAGGCTGCTGCACCAACAGCAT GTGCGGGTACTCCCACGACACCAGTCACGTGACCTGCGGCCAGTGGCTAGAAGGCAGATGCGAGAGGGGC ACCTTCTGCAAGTTCATGCACGGATACACCAGTAACATGTCATCAGAGAACAGTAGCAGAGCTTGC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds