Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT111740.1 TSA: Strongylocentrotus purpuratus WHL22.6617.1 mRNA sequence TAAAAACTGAAAAGACGGTATAGTTCTTCGGTTCATTTCCTCCGGACAAAAGTAGGACCAGTAGAGCAGG CCCAATATCAGGCAGCATATAGGCTAGTCCACGACTAGCCCGACTAGCCCGACAGCCAAGATGGGGGACG ACGACTCCGACGTGAGTTTGACGCCGCAGGAACAGTTCTTCCTCGCCGCGTCGAAGGGCGACGTAGCTGT CATCAAAGCCCTGCTCGATGGCCGCCCCGAGAACGGTGTGGATATGGACGCCAAGGATGAGAGTGGTCTG AGTGCATTGAATCTGGCAATAACCGAGGGATATCTAGGGGTGATGTACCCTCTACTAGAGGGTAACGCCC ATATTGGTGACGCCATGTTAAGAGCCGTCGACGCTGACTTCCACGAGGCTGTACGAACCCTGCTCCAATT TGCTGAAGAAAGGGACGAGAGTGGTCGAATGGCGATCATCAACTGCAGATGCGAATCGAGCGACATTCAT CCGGACATCACCCCTATGATCAGGGCGGCACAGCTCAACAGCTTTGCCATAGTGAAGATGCTGCTGGAGG CAGACCTGTTGATCCCAGAACTGAACACGGATGCCTTCCAGGATGAGGCTGCTGATGATCTTCAGCGGTC CGTAGGGACCCTTGAGATCTATGGTGGACTGGCCAGCGAGGCCTATGTATGTCTAGCAAGCACCGACCCA ATCGACCGGGCTTTCACACTGTGTGGGATTATGAAACGGATAGCTATCCTGGAGGTGGAGTTTAAAGTGC GATATCTCGAGCTAGCGGATAAAATGGAGAGGTTGGCCGCCGAACTTGTATCATACGCACGCGATTCCGA GGAGATCAATACAGTGCTCACGTTCCAGGAGACTAACGCACTGAATGGGGGCGCCCAGAATCAGCGCCAT GTTGGAAACATTCCCAAAGTGACACAAGCTATCCAGTATGAACAACGACAGTTCGTCGCGCACCCGAACA CCCAACAAGCAGTTTCGGCCCAGTTCTATCGCCACCTCGCCCATCTCCGTGACGAGCCGCCCTTGGTCAA CTTCCTCGCTTTCATCGGTCTCGTCGTGGCTTTCCCGTTTTTTTCAATCCTCTACAAGCTCGGCGTCTCC ACACATATTCGGCATCTTGTTCGAACTCCGTATGTCAAGTTCGTGATGCAGGCCGGGGCAGACTTTAGCA TGCTTATCATCTTGTTAAATATAGACACATCATCACACCTGCATAACATCATCATGACACGCAACCAGTA CATTGTGCATTTCATACTCCTGCTCTTCGTGGTTGGATTGAGCTGGAAGGAGATGTACTTGGCTTACCTA TGTGGGATCAGGAAGATTATGTCATCCTTCGAGCATATCAGGGACACCCTCATCTCCATCCTGCTCATGG TCTACTTCGTTTTGACCTTCCTCAGCATGTTCCAGGATTCGGGGACATGCCCTGCCGCACCGACCATAGA CCCGAACGCCGTGAACGTCCTTGAAAACTCCACTACCAACATCGGTGGCATCACGCGTCTCAGACTCGAA GAGATAGAACTCAATGGCCCCTCCCGGGACGTCGCCATTGACATCATCATCGAAATACTTGCCGACCTCC GCTGTGTATCATCACCTGCCCTGCAGATGGATGAAGCAGAAGTAACCACAGGACCGCCATCAACGTCAGA TTGCGAGAAAACGAATTCGATCCTGTCCCGAAAATGGAACGATCCGTCTCTTATCGGCAACGGTATCTTC GGCATCGTCACGGTTCTAGCCTTCACCAAGTTGATGTCATTCCTGATCGCAAACGATTTCGTCGGCCCGC TGGTCATCTCAGTCGGCGACATGGTGAAGAGGACGTCGAGCTTCTTCATCTTTGTAATCGCTGTCATCAT CTCGTTCTCTTCGGCGATGACGTTCAACTATAACATCTACAGCCAGGGAGACATAGAGAGATGTGAGACG AATGATGCACATGGAGACTGCGGCAGGTCTTACGAGTATAGGAACCTGGGACGCAGCATGATGTCCCTCT ACTGGTCACTCTTCGGTCTGATTGACCGGGATTCCTTGAACATCAAAGCAACGCCCGACGTCATCAGGGG TGCAGGAGAACTCCTTTACGGTGCCTTCTACATCTTCGCTGTGTTGGTCCTCCTAAATGCTCTCATTGCC GTTATGAGTAACGTCTTTAACAAAGTAGAGGAAAACGCCGATGTGGAGTGGAAATTCGCCCGAACCACGC TTTGGATGAGTTTCCTTAACGACACCGTTACCGTCCCGCCGCCGTTCAATTTGTTGCCTGATTGCAGCCA ACTTAAGCAACGTCTAAAGTTATGGTGGCAGATGTGTCGTCGACGTCGAAACATTCAGACAGAAGTGCTT CGTGATTCCTTAAAATTGAATGATATGCAGAAAAGGAAAAGAACTTACAAGCGAGTGGATTTGTCCAATT ATCAGCGCATTATGCGGAGGCTCGTTGAACGTTTCGTTGCCGAGCGGACTGCCCAGGAAGCTAATGCACA GGGAGGTATCACCGTGGCCGATATCAGGAACCTACGAAACGACGTCGTGGGATTGAGATATGAAACATTT AAGCAGTTGTGTCAGATGAATGAAGAACTGGACAGGTCGAAGCAACAGAGTTCAGCGATCAGCGGGCAGT CAAATCAGGCCAGTGTGGTGTTCACACGAACAGACAAGATAAAGGACGAGGTTCACGAATACAGCTCGGG TCTGGCTGAGGTCCAATCCGAACTCTCGCAGAAGCTCAAGATCCTCCCCGCGCTCGAGGAGCTCATGCGG GAACTGGCCGAGATGCACAAGGCGAGCGGCGTGCCCGAGCAGTGGGGCAAGCGGGTCCAGGACATGGTGG GTTACTACGAGGAGGTGAAGGACATCGTGGCCGCGAGCAAGGATCGACAGGTCAGGACGAGCTCCTTCAA CCTGCGACCCGGAGTCAACGTGACCTCGGAAGATGAGGACGGGCAAAACACTTGGTTGTAAATTGTCACT CGCTTGTATCTCTAACCTGGCTACGTTTGCATGAGCTGGTTTGCAGTTGACAACACTGTCCCTTTCGCAC CGGCTTCAAATCTTGTGCATGCCTTCCATGTTTAATTTAAATCTTTCCGATTCGTTTCTTTTTGATGTTG CTAAGCATGGCCACTTTGTAAAATGCTTACTTTGTACATTGTATATTGTACATGTAACTTGCTATCTGTC ATGGGGCTTTTGATATTGCATTTTCATGTCGTCCTCTTCAACTATCAAATGCACTGTAAGAAAAGTCCAG ATTTTAATCTCATCAGTTTGTGAAGTTTTCAGGTTTGCTTTAATTTCAGAAATGCACTTGATAACAAAGG CGATATATTATGTGTGCACAGAATGCATTACGTAACGTATCAATAATCAATCAATCAATAAAGCTGCATG TCAAATTTAGTCACCATCTGATAAGCATCTGAATACTAAACTGATATCATATCTTAGAACTGAAGCATAT GAACTTATGATACCGTAGTTAATACCTTATTTCTTGTATGTCATGGTGTGGTTTACTTATGCTTATTTTA TAGGTCGAAAGTCTCGTCTTCAGGCAGTAATTACTCCAAGGTAAATTTTCGATTCTAACCGAATTCTTCA AGTGTACCAATAACCTGAAAGAAAGAAAGAAAATGTATAGCTAGAATGTATGAAATCAACCTTATAAAAT CCTTAAAGTACATTGTTGAAGGTTGATGAAAAAAAAAATTGAAATTTGTGTATGAAATGTTACTTATTAT ATTCCTTCTACTGTACTGACCCTCTAACGGGCAAAATATCCTGAGAAAATTCTCAAACCACAACGATATT TAAGGTTTTCCTTGAAGGCGTCACTGTGCAACACCCTCTTAGAGTGATTAAAAGTAAATTCTCCCAACCA TTTTTCAATTTTCCCGACCGTTTTTCCATGAAACTAAGACATAAAACAGGCTCTTAAAAATCTGTCAACA CTTAAATATCTGGAATGGTACATAGAGCCAATGCATTGCTTTGTGACGATTTACATTCACCTAAAATGTA ATTAAATTGTAATATAGTTGGAAGAATCAACAAAGTGATCAGATAATTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds