Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030972586.1 PREDICTED: Strongylocentrotus purpuratus ATP-binding cassette sub-family C member 9 (LOC585445), transcript variant X1, mRNA CTGGCGGTGCAAAGCATATTTGCACAAGGTTGCAATGAGGTCCGTAGTATAAAGTGGCGTACTATACGAC TATATGTTATCAAATCTGAATAAAATCAGTTTTTCAACACATGATGTTGGTATCTCTCCATACACATTAT TGAAGCTCACTGTGTGCAGTGGTGTCAGACTGGCAGAGTTGTAGCTGCAGAATAATTCTTTACAATCGGT TTAGTATCGACACTACCCCTGGATTTCACTTATGGGGAAACCAGTCAACAAACTCTTGAACACTGAAATA CCAGTGTAGGACCTATTCATCTGTCGTTCGGATAGTGAAGGGAAGAACAAAATATGTCTACAGAGCATAT AAATTGGTTTTGTGGAATAAACACAACATTGGTTCAAGATGAGGATTTTCTAAACAGCACATGCAAGGTG AACGGAACCATCGTCGTATCCCAGTTAGCCTTCAGCATCATCTTCATCATCACACCCCTCTTCCTGAAAT GCTGCACCTCATACGGCAAGCTTCCACCCTCTCCGTTCGTCTTTCGACTACCAGGCCACACCCTCAGATG GATCCTTACCTTCGTGTACTCGGCAATTTCCCTGGCCATGATCGGGGAGGGGGTACTCACCAACGACAGC TACATCGCATACGCGTTGCCAGGGCAACCGCATCTGTACATAACTGGGGTATTCACGATGATATCGGTGG TGGCATCACTGCTGTACTACCACATGATGGAGAAGTGGAGAGCTAGAGCGATGATCTGGTTTCTCTTGGT GTATTGGATGTGGTCTCTCGTTATCTTTGTCATGAAGATAGTGCAACTCGAACACCAAGGACTCGACGAT TGGCAGATCTTTACATATGACGTGACTCTTGCGGTGATTGTCCTTTCGGGAGCTCTACTTCTTATTGAAT TGACACTCTTCTACAGCTTGGCGTGCCGTGGATGCGGAGACCCCCTGAACGCCCCCAAACACCAGGACAC CCAGAAGGCATTCATGAAATACCGCCAAGAGCATTCCAATCTCCTCTCATCGCTCACCTACTGGTGGATG AACTGGCTTTTCATCCTGGGTTACAAGAGGGCAATTGAGCCCTCAGATCTGGGCAACATCCCGGAGGTTC ACACCTCAGAGTACAACCATCGGATTTTCAAGAAAAACTTCGAAAAGGAGAAGGAACGGGCAGCGAGGAG GGGGCAAGAAATCAGTCTGTATCGAGTATACTGGAATACGTACTCGTTTAAAATGGTGGCTGGAGGATTG TTCAAACTTGCTGCAGACTTCTCCAACTACGTAGGACCACTGTGCATCAGCGGCATCATCGTCTACGCAA CCACAAGTATTAATACTGGGACACCTAAAACAGAAAAGGCTATTCCCCATTACACAACCACTAATGAATT CTTCTCCAATGGCTTCATCTTAGTTGGATGTATATTCATTGCAGCCATCATGAAAGGAATATTTGATCAG TGCTACCAATATTTTTGTTTCATCGAAGGTCTCCATGCTAAGTCTGCTATTCAGAGTATGGTGTATGAGA AGTCTCTTCGTCTGTCAACGTATGCGATGTCGGGTGGGATGATGACCCAGGGTCAGATCACCAACCACAT GTCCCTCGATGCCACCAATATTCAACAATTCTTCAACTGGGGTAACGAGTTATGGACAACGCCAATTAAG TTTGGGGTGACTCTGTATCTTCTGTATCTTGAACTTGGAGTACCGTCTCTGATTGGTGGAGCACTCCTCG TCTCTGTCCTTCCAGTACAGCTCATCTTTGCCGGCTTCACATCCAAGTATATCAAACAAGTCTTGCTTTA CTCTGATCAGCGAATGAAATACTCAAATGAGATGCTACAGGGAATCAAAATACTGAAACTGTACGGATGG GAGCGCATCTACTGCAAACTGGTCCAAGCAGAGAGAGCGAAGGAGATGAGGGAGCTGGCCAAAGTGTACT TCATCCAAGCTTGGAATTTCGTCATCAACATTGGAATTCCTACCATGGTAAACTTAGTGTCCTTCAGTAC CTACACACTTATTACCGGTCGACCGTTGAGCCCAGACGTTGCTTTCTCGTCCCTCTACCTCTTCAATTCC CTGGTCGACCCGATGTTCATCTTCCCCTACGTGATCAGTCTCACAGTCAACTCCCACATCAGTACGAAGA GAATCAAGTTCTTCCTGGTCGCACCGGAGATCGAGGGAAAAGAATCCGAGAAGCAAGGCTCCGAGAAGGG GCCTGAAGTGTTTTTTAATTCCGGGTCACTAAAGAGCAGCATTCGTCTGTCGTCAGCAGAAGAGGAGCTA GACTCCACAACGCGTACTCCTCTTATCGATGGGCGTGACAACAAGAAGAAGTACAGTGCTATGGAGGACT CTTCGTTACCTCCTAAGGATGGCCTTCCAGGCGAAGTGGCTATTAGGATAAAAGATGGATGCTTCACATG GGACCCTGACTCCCATGAGGCCATTTTAAAAAACATCAACGTTGACATACCGGCAGGGAAACTGACGATC GTCGTCGGGACGGTTGGCAGTGGGAAGTCATCCGTTTTACAAGCAGTGCTCGGAGAAATGACGACGCTTC AAGGCCGAATACAAATAAGTAAAGGATCAAAGATCGCATACGCCCCTCAGAAGGCGTGGCTTGTCAACAC ATCTCTGAGGGAAAATATCCTATTCGGAGAGCGTTATGACCCAGCAAAGTATCGGAAAGTGGTCGAAGCC TGCGCTCTGGCTCCAGATATCGACATGTTACCTGCAGGTGATGCGACAGAGATTGGAGAGAAAGGACTCA ACTTGAGCGGTGGTCAGAAGCAACGTGTTAGTGTAGCAAGGACTATGTACTCAGGAAGAGACATCATAAT ACTGGATGACCCCCTGTCAGCCCTGGACATGCATGTTGGTAGTCACCTCTTTGAGAATGGTATCATGAAG ATCTTGAAGAAACAGAAGCAGACCATAATACTCGTCACCCATCAGCTACAATACCTTCCAGAGGCCGATA AGATCATCATCATGAAAAATGGAAAGATCTTGAGAGAAGGTGAGCCGGATGAAATAGGCCGGGAGGACCC AAGCTTGATGAGAGATTGGCAGCAAGCCATCAGGCAGATGAGCGAGTCAGAAACCGAGATGTCCGAGTCC GAGGCACTGCTGGAGGAAAGGCGCTCGCTCAAGAGACAGATATCCTTTCTCTCTAGTGCATCTACCAAGG AAGTATCTTCGACGCATGACGACAATGATGATGAGCGAGGACGTCTCATTGTGACAGAGGACCAGGAGAA GGGCTCCGTCTCTTACGGTATCTACCTCTACTACTTGAAAGCCGTCGGGTATTTGGTAGCTCTACTGGTC GCATTTGCTTCCATAGCGGGTGCAGCTATAGAAATAGCTACCAATTTCTGGTTGGCTAGATGGTCTGAGG CGAGTCTACAGACCAATAACACCCAGCAAGCCATTGATGACGCGAGTTACTACATTACAAACTACGCCAT CCTATCCGCCTTCAACGTACTCTCCAGAATGACGTACGTCGCCTTTATTTGCTTTGGAATGTACTTTGCC GCCAAAAAGCTGCACTATCAGATGTTACTCAACGTTATATCTATCCCATTAAGGTTCTTCGATACGACGC CAACTGGCAGAATTCTGAACCGTTTGTCAAGCGACACCCAACTTATCGATCAACGACTTGTGCAATCGAT GCGTCTCTTTATCAACATTAGCGTGGTGCTCTTGTCTGCATTCGTCATCATCATCTCCGTCAACATCTAC TTCATATTCTTCGTGATTCCCATCGCCGTCGTCTTCGTCATCTTGCTGATGTTCTATGTTGTCACATCAA GGGAGCTCCAGCGTTGTGAGAGTGTCACACGGTCACCAATTTTCGCCCATTTCTCCGAGACACTGGGCGG ATTGCCAACTTTAAGAGCCTTCAAGGATGAGAAACGATTCTTCCAAACGGCATTGGATCGCATCCTCATC AACAACACAGTATTTACATACCTCATCACCGCTCAGAGATGGGTTGGAATAAGACTGGATATGCTGGGTG CCGTCGTGGTTCTGTGTTCAAGTTTACTCTGTCTGCTTGGGGCATTCTACTTTGGTATTGATGTAAGCCT CGTAGGACTGGCTATTTCATATTCACTCGAGATATCACTTTTCATGAACCTGAGTGTTCGGGCCGCTGCC GAAGTTGAGCTTCAGATGAATGCAGTCGAAAGAGTCAAGTACTATGCAGAGCTGCCAACAGAAGACTACA GTGGTACTGAACCGCCTCCTTCCTGGCCTGACAAAGGTCTGATTGAGATGGACAATATCAGTGTACGCTA CGCTCAGGAACTTGATGCAGTCCTCACGGATGTCGATCTTACTATACCAGTACAAAATAAGCTTGGGATT TGTGGTAGAACAGGGAGCGGCAAGTCGTCTCTAACCCTCGCCTTGTTTCGTATCATTGATACATTCAAAG GCCGCATCGTCATTGACGGGATCGACATCGCCACCGTTCCTCTCCTCTCCCTTCGTCAACGTCTCTCCAT CATCCCACAAGATGCATTCCTCTTTACTGGAACTATTAGGAGCAACCTCGACCCCACGAGTGATAAGAGT GACGAGCAACTTTGGCAGGCATTAGAGATTGCCCAACTCAAAGATATTGTCACACAACTTGACATGGGAT TAGACTACCAGGTAACTGAGGGAGGGGACAACTTTAGCGTCGGACAGCGTCAACTCTTCTGCCTTGCCAG AGCTTTCCTGAGAAACTCCAAGATTGTCGTCATGGATGAAGCGACTGCATCAATAGACCAAGAGACAGAT CTGATATTACAAGATGTCGTAGCAGATGTCTTCCAGGATAGGACCGTCTTGACTATCGCACATCGAGTGT CGACTATCCTGAACGCGGATTCGATCTTAACGCTACAGGACGGAAAGGTGATCGAGTACGACTCGCCAAA TAACCTCCTCGACGACGACACCAGCATGTTTGCTTCTCTTGTCAAGGCAGGGAAGTAATGGCTCAGGTGC AAACCCTAAGCGAAGGGTGATAGAATCGCGAAAAATATTAAACAAATAAAGAGAAAAGAAAATGGAGAAA TAGAAAAGTAATGGGAAAAAGATGATTAGACAACTTCATCACCCTTTTCTAATCTTAGGCCATGTTAATT CGTATTTCATCCATATTGAAAGACCGGTGCCGAGTGCAAGTACAACCTCAATGTCTAAGCCCATGTGACG ACATCGAAGAAGGTTGTTTTTTCCAAATAAGGAAGGTGAAATAAGATGATAGATGATGATGATGATAGTG GTCATGTTGATGATGATAATCATGATTGTGTATGATAAAACGTTGTCAGCCATTACAGGATATGGGCTGC GTTATGGCGTTGATACAGAATTGCTTTGTTTTTCATCTTTAATATACTAGTAACTAAAATTCTGATGAAT AGAAAATACTTAAAGACACCCAGTCTCAAAGTAATTTCCGAATGAACAGGTAAATGAGGAAAGTCCAGTG ACAAAAATAGGGAATTATGTGTTAATGATATATGCATTAATTTCTTTTTCATATATTCTATTTCTCCGGA GCATCTCTGCTCTCTGCCCCCCCCCCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds