Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT098917.1 TSA: Strongylocentrotus purpuratus WHL22.350122.0 mRNA sequence GGAAGTGCATCCAGCAATCTACTGAAGTCAGTCGGCAGAAATTGTCGGCCTGTCATCAGAAAAAACTGGA TCATATCGTGGATTTTCTATGCTTTTTCTTTCTATGTGTAGTATTTCATAAGAGAGGGACATCATGTCGC AAACGCCAAGTGCAGAGATTTCGAGGAAAAATCCTCTGGAGGATTTTGAGCTGCTGCAAAGAATAGGTAG CGGAACGTACGGTGATGTTTACAAGGCTCGGATGACCGCAGCTGGAACTCTCTCTGCCATCAAGGTTATA AAGATAGAGCCAGGTGATGATTTTACTATCATCCAACAAGAGATCTTAATGATGAAGGACTGTCGCCATG CAAACATCGTAGGATACTTTGGGAGTTACCTTAGAAGAGAGAAACTATGGATTGCTATGGAATACTGTGG AGGTGGATCACTCCAGGACATCTATCACATGACTGGACATTTGGCAGAATTGCAGATTGCTTATGTGTGC CAGCAGACACTGACTGGATTAGCTTACATGCATACACTTGGAAAGATGCACAGAGATATCAAGGGTGCCA ACATTCTACTGACTGATGATGGAGATGTCAAACTTGCTGACTTTGGAGTCTCAGCGCAGATCACACAGAC GATAGCAAAGAGAAAGTCGTTCATTGGCACTCCTTATTGGATGGCCCCTGAGGTGGCTGCTGTGGAAAGG AAAGGGGGCTATGACTTCCAGTGTGACATCTGGGCAGTAGGTATCACAGCCATTGAACTAGCAGAGCTTC AGCCACCAATGTTTGATCTACATCCAATGAGGGCTTTGTTTCTGATGTCAAAGAGCAACTTTGTTCCACC GAAGCTGAAGGATAAGAACAAGTGGTCGCCGATATTCCATGCATTCATCAAAACAGCACTAATCAAGAAT CCAAAGAAAAGGCCTACTGCCAGTAAACTTCTTCAGCATCCTTACTTCCAAGACAACATAGACAGGCTGA CTGAGCAGACGATGAGGCAACTGTTAGAGAAGGCTCGTAATGTCAACCCAGGCTATTCACCCATAGAAGA TGATGATGATGATAGGTTAGATGAACAGGCACTAGTAAACGTGAAAAAGAGAGTATCATCTAAGAGGACA GACCAGAAGGACAGACCTGCTTCAGAAATCAACATGGACTTTGTGAAGAAGGTGAAAGAGGTTCCCAGGA TGCCACCTGATGATGATGGCATGCTCGGGGAAGGTAACTACCAAGGAGCACATGAATGGACCCCAAGCAA CGCAGAAACAGAGGGAAGAAAGAGTTTACTTGCTTCCGTTGAGGAGGAGCTACAAAAACGGGGTCATCAG ACCAATGATTTCAAAGGGGCTGAAGAGAACACAGAGGAGGGCAAACATGACACATTACCACACAGTGATC GACCTCCACCTCTTCCACCTAAGCAAAAGTCAGTGAAGTTCTCAGCATCAAATGGAACTGCATCCAACGC ATCAACAAGAGAAAGCGCCCCTCCATCAGTGCCCCCATCCAAACCAAACAGACCGCAGCAACAGAAGATG ATGAATGGAAGAGCCCCCACCACAGAAGGAGAGAACACAGAAGATATCGATAATAAACCGCCGATCGTTC CACCCAGGAGGATACGAAATGAATTCTTAGAACCACCGCCCCAGCAAGCTAGCAATGGACTTCCTCCAAC ACCAAAAGTCACTATGGGAGCTTGTTTCTCCAAGGTCTTCAATGAGTGTCCATTAGTTATACATTGTTCA GCAAGCTGGGTTCATCCAGAAACAAGAGATCAGTACATTATATTTGGTTGTGATGAGGGTATCTACATGT TCAACCTCACTCANATTCATGAAGGTGCTATGGACCAGATGTTTCCTCGGAAAACAACATGGTTATATAT CATCAACAATATCATGATGTCATTATCAGGCAAGAACCCCAGTATCTACCAACACAACCTGGTTGCATTG GTGGATAAGAACCCTCATAGGTTTCACATGCCAAGCAGATTTGGTGAGAAGCTCCAGAGAATACCAGACA AGCTAGTACCTAGGAAGTTTGCACTCAGTCATAAAGTACCAGACACAAAAGGCTGTACAAAGTGTTGTGT TGTGAGGAATCCATACAATAGTCATAAGTACTTATGTGGAGCTCTGCCTGCGGGTGTGGTATTACTGCAG TGGTATGAACCCATGAACAAGTTCTTACAAGTAAAGGTGTTTGACTGTCCACTGCCACCAGAGATCAAGG TATTTGAAATGCTCATCAAACCGGATGCCGAATTCCCTATTGTGTGTGTTGGAGTAGCAAGAGGGTTGGA CAGGTCACACCTAACGTTTGACGTTGTAAATCTGAACTCAACGAGCAGCTGGTTTGTAGAGCACCCTCCG ACGGAGAAGCTTCTCGACGTCGTATGTGTGTCTCAGATCGAACGAGACACTGTCCTGGTCTGCTTCGACA GTGAAGTGAAGGTCGTTAACCTGAACGGCAGACCGAGGAACAGCAAGAAACTGCTGACTGAACTGCACTT TGACTTTGCTGTGGACAAACTAGTAGTACTACAAGACAGTGTGCTGGCCTTCCATCGGCATGGCATGCAG GGAAGAAGCTTCAGGTCAAATGAGGTGACGCAAGAGATCTGTGATAAGAGCAAGCTGTTCACCCTACTTG GCCATGAGAAGCTCACTGTACTCAAGAGTCATCCCCTCTCTGATCCTACTGCACCATGCAATATCTATCT ACTCACAGGCCATGCTAACATGATGTGAAGAACACGCCTACATTGTGCACCGCCTGATGAGGCACGCAAA TATATAATGTGAACATTTTGTTTGAACATTCTGCTTCCCATCAGGAGGACACATAGTTAGTGTGATACAT TGAATGTGCACTGGTCAGCAGATAGACATGTTACGTCTAGGATGGACATGATAGTGGATCAACATGATGA TGACGGAGTGATGAGAGAGAGAGAGAGAGGAACTGTTAGGCCTAGAAGCCATTGTGTGTGAGAATGGAGT CATTCTTAGCAGCAGCTGGACAGTGCTAGACAATGATGCTCTTTCTGTGCCCTTGAGGAAGGAATGTATG CCTGGAGAGAATGCTGGTTTATTGAGAGCTATGGAGCTCAGTCAAGATGATATCATCCCATCCCTCCTCT ATATCATTTCTTTATTGCAGGGTTTGACTTTGAAATCCCAAGCATCTTTATACATTGTAAAATCTTGTAA CTGTAACAGAAAGTATATTGTACATGAGGTTTGTTTTACTGGCTAGAGTAAATTATAACATATACTATGT TGCTATTCATGACATACCTAAACCAACAGTAAATGATGTAGAAGACATTGTCAAAATGGAAGCCCCTTAT CAATTCTTTGGAAAATACATTGCATATATACTGTTCCTACAGAGGCATTTTGATGTTATACTAGGGTCCG ATATTGTACACATTTTGATTGCTGTCTCTCTGAATAAACTTGCTGAAATATGATCCTATTGCTCTAATAA ATCTGTAAATTGCATGTTTATCCGAAAAGAAAAGGTAACTGATGGCTTATCAGAAGCTAGTCAACTGCTC AAATACATAGTTATGATTGATGATGACAAGAATGAGTTCTTTTCCAATAACATCCCTATTTGAATAGATG CTGTATAGACAGCATGAGTTTTTGATTTAAGGCTTTAATTTTCCCTTGGGTTGCGGCAGATGAATATAAC AAGTGTTAAGAATTAGCTGATAACTGTTCTACCTTTGGATATAAAAGGATATGAAGTAGCATGCTGCACA AAGGAGCACAATAAAAATATTACTTAGACAAATAGATTTGATTTTCCTTCTATTAAAGTGGCCCTATGTT TTAGCCATTATCAAGGAGAAGAAAGCAACAAAGAAGTGTCACTCTTCAGGTATTGATCAGAATAGTAAAC TAAAATGGAAAGCTCTTTCAGACTTTTCTGTGGTCAGTTCATAGACATATAACATCATTACATGAAGTTT CTCTGTACCATGTACAAGTACTGCAAGATTTTGGAAATATGTACACTTTACTTTGGTATTGGAGAGATAA ACAGTACATAAATGAGAATGAATTGGCTATTATTCAATACTTATACAATCTATCATTTCCCATTTGTCTG TATATTTGTGTGAATGTGTTACCCACATTACCTAGTGATTAGTGTTAACCTTGGTATGTTCACACATGAG GCTGGAAGCTGCTGCACTGTTGTTGTTTTCCTTCTAACATGTAAATGACAATTGAAGATAAACAAAGTAT CTGCTCAACAAAGGTCCTGTTTATACTCAATATCTGTCAGATATAGGATACAGAAATGTGAAATATTTAG TGCGTCACTTGCGTCATTATTAAAACAAAACAAAATGCTGCAGTTTGCTGCCTCATATGTGTACAAGCTT TTAGTGTCAGCCTTCAGTTTAATATGGTGTATCCTTTTATGACAGAAATTTTGCCCTGTAATTGTTCAAT TTATTCTCCTTTGTGTCAGCGCAAAAACCAATCCAATCCTGATTTTTGTGATATAAGTATATATAAGTCT ATTCATCTTTGCCTTCCAATGTATTGTAATTAATTTTTTTAAACCAACTATCTTTTTTTTCTTCATATAA ATTGTAGGGTTCTATCTATGCATTTTTCACACAAGGACTTTTCTTCTTCCAGTTCAATAAGGATGCTGCT TTATAGGTAATAGGAACCAAGAGCTTTGTTTTTAAAAAATGAACAGTTTGTTGGTTGACTGTCTCCCACG ATGTGCACCAACAAATATCTCTTCGAAGCCATTTCCATCTGCATACCCTATTTGTAAGAATGACAATCAA AAATTTAAAGAAAAATAAAAGAGTATATTATTATTGTCCTGCACATTATTTTATTCCTTTACCAAAAATA ATAAAGTAAGGATAAAGCAGTTTATAAAAAAAGGTGAACTTGATAGTTTGCATATGATATTCCTTTGCAC AATATTGCACATCTATTTTTAGAATACATTAAGCAAAAAATTCCTTTATTAGTCCTCAAGCCCATTCTTT TTGTATTGCTACAAACATCTGCTCATTCTTTACTATGAATTTATTCCCCAAATGTAGACATTTTGGGGTA AAATATGTCTGCATTTGTAGAGAACAAACTTTCATATCTGCCCATTATCACAGCATGAATTATACTTTGA ATTATAATTTTTGAATTTCTCTCTGTCGTCCTTTCATTATTTGATAATTTTGATCATTTCTTAAATGCAA TATTTGTATATTTTTGCATCAGTTATCTTTGAATTTTGTTAGTGCAAAAGTTTATTATTTCCTTTTGTAT GGTAGAATTCCTTCAGCTAATTTAATCATTTCTTTTGAGTTGAATGAAATTGCGATTCACACCTCAGTTA TATGTGTACAAGACATGTTGAAATAGTATAGAGTTACTTTTTGAAAGTCATTTGTCTACATGAAATGTAA TAATAATGATTAATTTTGAATGTATATTACTGTTTAATGAAAGTACTGTCAATGTTGAATTTTATGATAT ATCACATTTTAACCAGCAGAGCTATTTCATATGTAGTAAATGTTGATAATTTGGTCTTTTAGAGTATGAC ACTGCCAAATGGGTTGCGTTCTTACTTTTATCCACTTACACGATATGGCACCTCTTAGCACCTCCAGAAT TGCGCCAAAGATTTATTCATTTTTTTAAAACCTGTTTTCGTAAATTCCTGTCCCTCTGTTCTCCATTTTA GTTCCTGCTCCCCCATACTTTTTGTTGCTTTCTCCCAGTAAAATGTTGTGCTTGGAAATGAGTAGCTGTA TGGGATCCCGGTACCTGTTTCTAAACTTATCTAAAGTTGTATTTGAGGGACAGCATTAAAGAATTTAGGA TGAATGGCTTATCTGGCAGCATTAGCTCATTGATTGAATTCACTGCTCTCTTCACTTCGCTATAGTACAT GTACCTTTTTTGCTACATTACTGGGTTTCATTTAGATCCATAAAACCATTCATATGGGTTCATTACAAAA ATACTTTATTAGCAAGCAATGTATGTACTTTATAAACTATGTTAGATCCTGGTGATAAAAAGTAGAGTCT ATAGTAATGTTAAAGAATATACAATTTTTCAATATTGTAGCACCTGTTGCAATTCAAAATTCAATCACTA GGTGTTTATGTGCATATTATTTATGATTAGAAGTTGTTGTTTTAATGATTCAATGACTAAATTTGCAACA TCTGCTCACGGTATGCGTTCTTATATAGCACTGTAGAACATCAATACAGAAGAATGCTTTGGGGTTTTTT TTTAATGGGCATTCGCATTTTCTTTGAAGGTTATGAATTTGCATGTATTTAAACAAGAGATGATTATTGC AAAATTGAAACAGAACTGCACAATCAATGATACTTTACCTGATGTATATTCCTTGTTCAGAAAGTCTTCC TGGCATATGATTGTTTTTAGAAATGCTTTATATCACATTCTTTAGTAAAGGTCTGAATATAGTATGTACA AGATTCAATGTCGAAGACACGTTTGTTCCATGTAATGCATTCACACATTTTATTATTTAGTTAATATAAT TTTCATTTCTCTTGTGATGACTCTTATTTTTGTGTGTGCACCTTCTTGCTGGTATTGAAAGTTCCAACTT GTTCTCATTTTTTTTTGGTCCTTGGTCGCTAGTTGAATGGATAGATAATAATAACTCCTCCACATCGTAC CCTTGCAAAAGCAAACTGTCAGTGATTTGTGAATTTATGTGATTATCCTCCGTGAGTGTGAGTAAACTGA ACAAAGATGTTTTAAGTGCTAGCTGCGTATTTATGAAAAAGACATGTCAAATCTATTTGATTGTAATGAA TGATGGGACCCATCAGCCTTCTATGCTTTGTACATGCTCATGTGTAAATATCTTGTAAATGTGGCATGTA TGATGGCACAAATTACATGAGGATATTGTTATTACGAAATACATCTTTTTATACTATTAAAGTACAATAA ATTTGAGATGATTTGTATTTAAATTATCACACTTTTGTACAAGTTTTTAGAAATGGACAAGCTAAAACCT ATAGATGTTCTATAGGAAGAAAAAAAATCAATTGGTCATGATGCTACACACTTTATAACTTTAAAACAAT TTTTGAATTTTTATTAATTTTTGTCAATAAAATCCCTTCCATTTTTCCAAATATAATTACCAAAATACTC CACAAGTTCCTTTGATTTTTCTCTGTATGCTATACTAAAGATAGAACAGGAAGGAATGTGATTTGTAAGA AAGATCTCTCCCATCAATCACTATAGAGTTACAGACTACTATTAATGAATACTACTCTAGATATGATATA ATAACTTCAAATTATTGAAAACTTTTTATGAAAGATACAGTATACTATAGATTTATTATTTAACAACAAC AGTTACACAATGAATAAATCAAATCTGGGAGATATTCACAGGTTTCAAACAAGCAACACCAGCGCAAAAC ATTGCTGTTGAGCTGCATGTTTCACCTTGTTTACCTGAGTGCTAAAGTAGAATTATGGTCAAATATGCAA AGGTGATAAATGTGAATTTCAAACTCTTACAAGTACTTTTTAACATGTGTATACATTGTGGCCATAGGGG TGGCTCTTTTGTACACACAATTGTATTGCATTATACAAAATTCAATATTATGAGAATGCAATATCAAGAT GTGGCATATGAGTTTAACCATCCATTTCTTTGTAAAATGTTTACTTAACCTATATATATCTTATGTGTGA ATAGCTGGAAAAAAGTAACTATTATTGTTCTGTCATCTCAATCAGTTGTACATACAAAAATATTGCTTTA ATCAAATTTCTTTCTAATTAAAAGAAGACAAGTTCTGCCATAAAACAG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds