Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030974648.1 PREDICTED: Strongylocentrotus purpuratus receptor tyrosine-protein kinase erbB-4 (LOC586488), transcript variant X1, mRNA TCACGAACTTAAGGGTGATCCGAGGTACGAAGCTTTACGATGACAAGTACGCCCTCTATGTTGCGTTGAC GTTTCACACGGGAGACCCAACGATAGCGACAGAAGAGATGTGGTTAACATCATTACACGAAATCTTGAAA GGGGATGTATACTTCCATCAGAACAACCAGCTCTGCTATGTGGAGACCATTGCTTGGGATGACATGCAAC CAGGCCTGGTGGCCAATATCTCCATGTGGGATGAACATGCACAACGAAACTGCTCCGAACATCGATGCCA TGAATCTTGCAATGGACACTGCTGGGGTCCAGGAGAGGAACATTGTCAGATATTAACACTAAAGGATTGC AGCTCAACCTGTGACTATCGTTGCCGAGGTCCCACGCAAGCTGATTGCTGCCACAGAAGTTGTGCTGGGG GTTGCACCAATTCATCCAATGCTGGCTGCCTGGCTTGTCGACAATTCTCGCTGGACAATACTTGTGTGGA AACCTGCCCTCGGCGGTATGAGTACGATAGAAACACTTTCACCAACGTGGAGAACCCCAACTTCCGCTAT TCCTATGGTTCCAGGTGTCTCAAGGACTGTCCAAACAATGTCTTGGTAGATGGTGATAATTGCGTGAAGG TTTGTGGGCCAGGAAAGAAAGAGCAGGACAACCAATGCATTCCTTGTGAAGGAGTGTGCCCAAGCACCTG TGATGGGATAGGTGATGATGGAGCCTTATCCTCCAAACACATTCGCAGTAAACAGTTTGATAACTGCACC CAGATCAACGGCAACCTCATCATAACCTCACACACCTTCACAGGTGATGCGTTTGCCGGCACCACCCCTA TCGATCCAAGTGCCTTGGAGATCTTCAGAACGGTCAAGCAGATCACTGGCTACCTGTCTGTCCAGGGACT TCACCAACACTTCACCAACCTCTCCATGTTTAGCAACCTGGAGAGGATCGATGGCCGCAACCTATACGGA GAGCCACCGTTTGCCTCGCTGGCCATTCTCGATAACCAACATCTGGAGGCCTTGAGCCTGATCTCACTTA ACGAGCTCAAGCTGGGCGGAGCGTACGTCCAGAATAACCGTTTGCTCTGCTATAGCGAGGAAACTGCATT TGATGCCGTCATAAATCCTGAATATAGCGTCTCCTTCGTAAACAACAAAGATAGGGCTACCTGTATTGCT GAGAATAAAACCTGTGATCCACAATGCGCTGATATCGGCTGCTGGGGGCCTGGTCCTCGGCAGTGTGCTA AGTGTAAGAATGCAATCATCGGTGATACCTGCATTGAAGCATGTGATCTGGATAACGGCCAATATGTGGA GACGGAGGCTAGTGCTTCAGAAGCAGCTGTGTGTGAACACTGTGATACTCAATGCTCAGCTGGGTGCTCA GGACCGGAACCAGACCAGTGTGACTGCCAATCAGACTCAACAGGAACAAACTGCAGGAGGATGTGTCGCA ACGTCCAGGACGGTCCCTTCTGCAGGGCGGAGTGTCCCGAACCCAAGTTTGCCAACGCTCAAAAGAACTG TACCGATTGCCACTCAAACTGCCTCAAGGGATGTAATGGCCCTGAGAACAATCTTGGTGAAGATGGTTGC TTGGAATGCCCGCAAGTTATGCTTGACTATAACAGAAAAGTGATGGAGTGTATGCTTATCAATACTCCGT GTAGTGATGACTATTTCTATGATCGCATCTCCCACTCGGAGAAGTCTGATCCTCTAGCAGGTTCAGTGAT CTGCCAGCAGTGTGACCCTATGTGTATCGGATGTGACGGGGCGGGGCCTCGACGATGCAAGCAGTGTAAA CTTTTCCGGCAGGATGATGAATGCGTAGATGAGTGTCGGTCGGGCTTCTATCCTGATGTGGACGATATGT GTCAACCATGCCACCCCCAGTGCAGGCAATGCTTCAATGGTACCGTACATGACTGTCTGGATTGCGAATC ATACACCGTACAAACTGGAGAAAATACTTTCTTCTGTGCACTTTCCTGCCCAGCGGAATACCCCAACGAG CTCAGTCCTTACGTCTGCGGTAAGACCTGCCCCACCCTGTTTTTCCCTAACGCCATGTCAAAATGCGAGG GGTGCCACACCGAGTGTAAAGACGGTTGCCATAACGGCACGCGAAGCGGGTGCTATGCCTGCAAGAACGT GGTGGTGAACCTGGAATGTCGGGCGGAGTGTCCAGCTGCTTATAAGAACACCAATGGTACCTGTCTCTAC ATTCATGGTCCTGATCAGAAGGCCACGCCCAAACCAGGAGCTGCCAAGTATCTTCCTCTCAACAGTGGAG GTATGTCTATCGGACTTCTTGCCGGCATCGTGACGAGCTCCCTCATCATCTTCATCGTCATCATCGTGTT CGTCATCTGGTTCAAACAACGCATCAAGAACGACATGTACATCGACATCCCCCCTAACATAGATCTGCAT GATATGAAGAGCTGTGACTATACTGGAGCGCCTCTGACACCAAGCAACGTGGAGCCCAACCAGGCCCAGC TGAAGATTATCAAAGACACCGAGCTCAAGTTAGGTCCGGTCCTAGGATCCGGAGCCTTTGGGACCGTGTA CAAGGGTCTGTGGATCCCGGACGGTGAGAAGATCAGGATTCCCGTCGCTATCAAGGCTCTCAGGGAAGTC TCGCCCCATGCAGCTGAGGAACTGCTAGAGGAAGCAAAAGTTATGGCATCTGTGGACCACCCATGCCTGC TACGTCTTCTGTGTGTCTGCATTGCCCAAAACATGACCCTGATCACCCAACTCATGCCACTTGGGGCCAT CTTGGACTACGTACGTCAGCACAAGGAGCAGATTGGCTCTCACCATTTGCTCAACTGGAGCTTTCAAATT GCAAAGGGAATGGTATACCTGGAGGAAAAACATCTTATTCATCGTGACCTGGCTGCTAGGAACGTCCTCG TTCAGAGTCCAGCACAGGTCAAGATCACAGACTTTGGTCTGGCCAAGTTCTTGGAGGTAGACTCCAATGA GTACAAAGCACAGGGTGGCAAGATGCCTATCAAATGGTTGGCCTTAGAGTGCATTCAATTCAGGAGATTT TCACATAAAAGTGATGTTTGGAGTTTTGGTGTGACCCTCTGGGAGCTGATGACCTTTGGAGGGAAGCCCT ACGAGGGGGTGAAGGCCCGAGAGGTACCGGAGCTCTTAGAGAGGGGTGAGAGGTTACCCCAGCCTCCGAT CTGTACAATTGACATCTACATGCTGATGGTCAAATGTTGGTTGATTGATGAAGATAGCAGACCAACCTTC AAGCAGATGCAAGAAGAGCTTGAGAGAATGACCAAAGACCCTCAGAGATACCTTGTTATCCAGAATGATG GTGCAATGTCCCTGCCGAGCCCCACTCCCTCAGACTTCTACAAGACCCTCATGCAGGACACTGAGTCAGG AGCAGACCCAGACCTACTCATGGATGCTGAGGACTACTTACAACCAATGAGCCTTACTGCAAACAACATG ACCTATGAGAGCCAGCAAGGTTTCTTCCCAGTGAATGGTGCTGGACCCAGGTCTCCTACAGGAAAGCCTT CTGGTCCATTGAGAAAGGATAGCAGTCTCCTTCGCTACTGTCAAGACCCAACTTTCAAGGGCAACTTTGA TAGGCAAAACAGTAATACGAGCGGCAATGATCCAAACTTGAATGATGACTACTTGATACCAAATGACAAG CTAGAAGGCTTCTCACCATTAATGGAAGAAGAGCATGATTACCAGAATGACCCCAGAAGACCAACAGACC TGGGTGACAACTACCTCCCTCTCAATGATGGAACCGGGTCTCAGCCGACCTCGCCCTCAGCTGGTATGCT TGATAATCTGGAGTACCATGCTATCATGGATCAAGCCTCACAGGGACCCAAGTCACCCAGGACCCCTACC ATCCACACCGGTGACCCCTGGACTCCCATGCAACAACAGCATCCTCACCTGGTGGCACGGCAGCATAGCA CGCCCTCCCAGCCCAGAACCCCGCCCGCTTACGCCCCTCTGGCACCCACCATGAGCTCCAGCACGCCCCT TCTGGGTGACGTGTCCTTCGAGGGACCCGTGCCGCCTGGCGGCGCTCCCGTCATGAACGGACAAAACGGG GGCCCCAAAGGCATGTACCGCTCACCCCCTCCCTCTAATAGTTCTGGAAGCCTTGGTCGGCATTCAACGA GGGGCAGTGAGAGCGATTATGTGAACTCTGATGTGGTGACAGATCGCGGGGAGTCCACCGTTTGATGATC GGACGATAGTGACAGACTTTCAAAAGGCCATTGCTTCCTTGAATATAACTATTTTTCATTATGGCCAAGT GTGCATTCTTTCAAGGGGAACGATGGATTCCTCCTCACGAGCGACAGAATGGATATACAAACCTAGAGAA TAGACTCACAATACTTTTACTTGTACTTAACAACAGATTTTTATGTGATGATTTTGAGATCATGATCAAA TTATAGTGTTTTCATGAGAAACTTAAAATGTTTATTACTTAGAAAAGTGTATGTTTTGTGCCAATAGTGT GAGAAATGGTCTCAAGTTTGGTGCATCGGCATAGCTTACTTGTCTCAAACCAAAGTGTAGATATAATTCA ATTTCAGTTTACCACAAAACTGAATATTCAACGTGTCTTTAATTAGGAGAATTGGGTAAGTATTGACTGG ATATTGCAAAATGATTAGGTATTTGACAGGAAAATTGGCAAGTTAAGTCCAGTTGTATTACTAGGTGCGA ATGTTCTTTATCCTGTTTTAAAGCATTATTTTAGAAATGCGTGTACATTGAACCATTTTTTGCTCAGCTA ACCATTCTTGAATAATTTACTTATTAATTGAGTGAGAAATGAGAAGAAAAAAAAATATCGGTAGTTGAGT AAACTCAGCTTTTATCTCCTCTGTTTTGAGAATCTTGTTCAGTACTCGTTGAAAGACAATGTTTGTATGT GTCCTTGACGTAATATATTATATGTAGACATTGATTCTTTCAACCTTCGTGTAGCCATAAGGTATTAAGA AACATTTATCAAGTACTTAAACATGTATTTATATCATAGTAAAGCTCATTCTGGGATGTGATGATGGTAC TGAATCTCAAGAAAAAAATGTATTTCAAATTTGTTTATTATCCAGTAGCTCGAATCTGTAAAATGTTCAC AAACTATCAAAATTTGAGCTTCAAATCAAACTTTTTATAGTCTTAATATCAATAAAAGTTTGTTTCAGAA TTGTGTCATGATGATTTCCAGTCCAGAAGTTCAGCTTATCAATGAGAATGCGTGTAGTCCAACGTTGTTA CGGTCAACAAAATTCTTTTACGGCACTATAGTCTTGTGCCACCTAGAAAGAGAAAGTTTTCACATATTTT AATGTTGTACAAGAATGCCTTTAAACAATCGCTTTTACATATATTTCATGCTTAAAAAGATTACACAAGA CTTTAAGATATACACAATAATAGTTGTAGTAAAGCAACATACAACTACATACCTGTAACTGTTTTCTTTT GATATTGATCTTGCTATATTTGAAATCTTTGAAAATTATATATATACTTCAGGTTATTTAAAGTATTGAT AAATATCTATAAGGTGGAAAATAAAAAGAAAGGAAACATACATATGTTTGTATGACAGAATAATTGTCTC GTAATTCACTATATATTTGATATGTGAATGATCCATGTACTAGGACTTCTTAATTGTTGAAAATATCCAA AAGTATTTATCAAATCTATTTTTGATCTATTTATGAAATGAATAATCATATGTGAAGCTTTAAACATGTA CTTAAAGGAGTTCAGGTGCTTTAGTCAGTTGTATGTATATCTCATGATTTTTTTTTTCTTTAACTATTGA TACCATGTAAACTGTTCTCCTTTATGCTGCTATTTAACAATAATCTTTTCAATTCTCCAACTAAAGTACC ATGATATTTAACTTCAAAATTCTTATAAAGTCTGAGATACAGTTAAGCTTGAGCAATGTGTTTGTGTTGA ACTCATTATTGTAGAATTATTGCATAATCTCTATGTATAAAAGACTTGTTTTTGTCTGGAAAAGTACTAT GTGAAATAATTTAGTGTGTCTTATCACTGCCAGTGCAAGAACAGTCTTGTTGTTGATGATAAAGAACTGT ATGTTTGTGTATGTATTTTTAGACATATTTGCTCCCTTTTTAAACATTTTATGAAAAAGGCTTCAAAATT GCAGATGACATGTTCTTTCTTTAACGAAAGCAAGCGTGAAGAGAAAATGGGAAGAAAACATTGGATGGGA GTGTCTCAAGAAGACTTTTTAGCATTGAAAGTGTTTTTAAATTGTATATTAGGGTTTGGAATTGGATTTT GATTTTTTTTTTGTAGATGGAATTGTATTTTTGCAAGTTTGGTTTTGTGCCATGTGTTGCCCTTACCTGT ACCTATGTATCGAAGAGTACAATTTTATATTGTGTACACTGTACAGTGGGATATTATCACATTTTCTTGA GGTCATACTTGAATATTTAAAATATGGTATAATCCATTTCAAATGTTTTCGGGGGAAATATTTTACCCCA TGGTTGATTTCCTAGGTTGTCTTTAAACACTCTGGATTAATTTTGCATCGTTGCCTCCTGTCAATATTTT GATTTGATATTGAATTGGGAACTCATCTTGGTATGCCATCTGAAAAGGTTTTTTTAGGCTTGGTCCTAGA AATGATTTGAGGAAACCTTGTCATGCCGTTCATCTTATCTTTGTGTGTTATAGTCATTGGAATAATGTGG ATATTTACATCGCATGTTTTTGAAGATGTTTTTTAGAATAACTGTTGTCCCAAATTGCACCTTTGGAATC ATTAAAAATAATTTGAAGCTGGCTTTCAATGAAAAATACAAATTGGGTCAGAATGGGTACAGAATGGGTA TTTTTTATAGTGCGTATAATTGAACCTAGATCTACTTTTTGAAATATTGTTTTGAGATATTATAAATTAA ACGAGACAGTGGATGACAAGATCTTATCTTGGATCTATATATTTAGATCATTTTCTTGACTTACCTAATC CAGATTTTTTAGTCCTTTCTTGTTTTGTTGTTACTGTTCAAACCCCATCAGATTTTAGAGAATATTTCTT AAGTAAAGACTTTTTCCTTGAAATGTTATACCGGTAGGAACTTTCTGTCTTGTCAGTTTGATTGCATTGA CATGTAGTTTATCTGCTTGTCAGGTTTTATGGATACTTTAAAGGGCCAAATATATGCAACAAGTTGTCCA TTTGTATTTTGCAACAGTTCAGTTCATGTAACATTGTTTTACTGCATATACAAGTCACATGCAAATGTTA AGAGTTTGTCATTTTCTTATGAAAGAGAAGTTCTTGAAATACGTTTTATTCTACCACTAGTCTAGGTATT ACCCAACTTAACGAGCTATTTTTGTCATTGTGTTTTAGAAAGCATATGCAAGTTTGTTGATGCCATAATT TTTATGCATACAGTGGCAGGTGATACAATGTTCCAGTCTGCAATTAGGTATTACAGTCTCCTTTAAGATA TTTTTCCTACTGTCATTTTTATAGTCTTGTATTTTTGTAATTTAATTAAAATGTGAATCAAGTACATTTT TTATGGCGACTAATCATAGACTGAGTTCAAGACCATAGTGATTGTCTCTGTCTCTGTTTTAAAAAAAAAG ACCAATCATCATTACTACCTATGTATTGGTGATTTTTTTTTAATTGTAAGTTGCAATTTTTTTTAAATGA ATGTCTTATATCCTTAAACTTTGAATTAATTAGTTTTTAAAATTTGTTTGGATGCTTTTTTGGTAAGGCT GGTGCAATCTACTGTAAATTATTTTTATACATGCTTTTGGACAAATTCTTGTCGAGGTAGATCCATAGTT TTAGTTTCCTAGATGTTATGTATGCAGGTAAACTTTCAGGATGTTCTTTCATGTCAGTTTAGTACGGAAA GGTAGAGAAAAATATAAACCTGAGAGTTGGTTTTGCACGGGATTGGTCGCTTTATATATTTCATCAATCA TTGATTTCTTTCATTTTACATCATGATCAAATAGATATTGAGGTGTTGGTGGTGGGATATCAGAACTAAT GCTTTCTTATGCAATATTTTATGTTATGTATCGTGTAGCATAGGCGCTAGTGTACAGTTATAGAATGCAA ATCATATTACAAAGGGCATCGGATAGAAACCCTTTGAATGATGATCATGATTATAATTATCTTTACGGTG TACATTTTTTTTCAATTTGAACATACTGGGTATAATCTTCAGTTGACTTATCACTTTATCTTTTTACAAT ATGATAGGCTTGTAGAGGATGCTCTTGTACATGGTTCACAGGTAATCTTGAGTTCTCACAAGGGACAGGA TTTGGAGGTAAACCATTAATCATTTCAGAAAACTGCAAGGAACTAATTAGACTTGTTCTAAAAACAACAC AACAGATGGTATATATGTATATCACAAGTTGTATATTAGTCCTGGCATACCAAGATGATCTCATTTTATT TACTTTTACTTTAATACCGATTATACATTTTTATCAAGTTTGACTTGCAGACATCATTTGTCTTTTGATA GTGTTTAACATTCAGGGTTTCTTTAAAAATTGATTTTACGACGACTGAGATGGCTTGGTCATGTCAGCCG AATGGAAGACGGCCGCATTCCAAAAGACATAATGTATGGAAAGTTAGCGACCGGGACCAGGGCTGTTGGA AGACCTGTCCTTCGGTTCAAGGATGTGTGCAAGAGGGATATGAAGGCCAGTGAAATTAACCCTACAAACT GGGAAGCATATGCCTCAGACCGTCCTGAATGGAGACGCGTTATAAAGACGGGTGTACAGAGGAGTGAGCA GAGGAGAGTAGAACAGTGGGAGGAGAAAAGACAACAACAACAACAACAACAAAGACAACAGCTAGCTACG GCTCCAACAGCACAGCCACAAATGACTTTTATCTGCAGCAACTGCAACAGGACCTGTCTCTCTAGGATTG GACTGTTCAGTCACAGCAGGAGCTGCACACCAAGAAACTGACAACTATATAGCACAATATTCTATTGTCT TTCGAGACAGACAGATGCCGAAGGAAGGATTTTTTTAATTTGCATTGCCAGAACTCAAGAATACCTGTAA GGCTCGAATGATCAAACTTTTGATATTTTCTTATTTGCAGAAGGAACTTATAGCTGTCAAAATAGTGGTA CTTTCCTATTGCTTTTAGGTTATGAATGAAAGCTTCTAGTGTTGTAGTGAGAAGTTGAGTATACTGAAAA ACAAGGTCCATATTAAGGATGATCTTGTTTTTCATGAGAAGGAATAAATCAAAGCTGCTTTTATGAAACT TTAATCATACATATAGATGAACAGGTATCATTGTTGAGGTGTTATATTTAAGAAGAAAAAAAATGTCTTA TCTCGTTATGCTATGATAATGTGTGTATATGTAATCATTACTGTGTAACGACATAGTACATTATAGGGAC TAATAAAAAAATGAGGTCCTTTATTCATTTGCAGAAAACTAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds