Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030989259.1 PREDICTED: Strongylocentrotus purpuratus formin-binding protein 4 (LOC577901), transcript variant X3, mRNA GTTGTTCATGCGTTTGCAAGGTCCAATGAAAACAAGGTTTTTATATTATGTGCAAAGTGTAATCAATCGT CGCGAAAACATGATGAAGATGCTCTGTCGCAAAAATGTTGTCTAAATTAATAGCGCTGAGGGCTTACGAA TTGGAACTGTCACTGTGGTATAAAGCACTACTCCACTAGTGACTGTCTCACCCACACCAACAACACATGG TAGACTGCTAGTGGTCAATGCTAATTTGGTAATGCATGTTTGTCTCACTTTGCAGACATGGCTCGTAACT CGGGATCAAAAACGTCTTCAGATCCATGTATTTATTGGAGTAGTGCATTCGTCATTTTTATCATCTTTCT TATGATGCTATTATTCACGATGTATGGACTGCAACTGCATATCCAGTGCCTAGAAATGCTGGTCAAGCCA CACAAGATAGACTATTAAAGGACTGCCAGTAAGCAGCAGTTTGATCCAACGTCCCACTCCACAAAGCCCC CCACCATGGGGAAGAAGAAAGACAGGGTCATGCCAGGCCCGGGCAAAAGACGAACCGTGCTCCAGATCGA AGGACCCTCCGTCAGCAGCAAGAAAGGTTATGGACCGAGCTCTGGGGCCAACGCCCTCAGCGGCTTGATG GCCAACTACGGTGACAGTGATGACGAGCAGGAATACACCACCCCGACGTACACTGACCCCAAACCTGCCG ACGCCCCAGCCAAGCCCAAGAATGCAATGGATGCCAAGCTGGCAGATTTCTTAGCTGAGATTGATGCATT GGACACCGCCTCCAACAGTCCAACCGGAGAGATGGTGGATGGAAAACCGACAAAAGACGAATCCGTTGAG GGGAAACCCCTAAATTCAGAAGAGCCTGCTGCAACGGATCCCCAGGGGTTAGTGGGAAACACCCAGGCGG TGGCCGGGGCAGAGGCAGAGGCAGGGGTAGAGAACCCTGAACTCACAGCTGTTGGGGAGTGGCAAGAGTT ACTGGATGAGAACACTAATTGTGTCTATTATTGGAACATGTATAGTAATGAAGTGACATGGGAAATGCCT GAGGCATTCAAACTCCAACAAGAGCAGCTGGCTGCAGCCGGCACAACCCTTCCTGTCGCATCGGACGCGA ATGCAGTAGATACAGGCGAATTGAATCTTCCAGCCGTGAATGCTGCAGAGTCGAACGCAATGGACACACA AAACGGCGATGTCGCCAGTGTGCTAATTCCAAATGGGGTCGCGTCCGAGGATCTCCTTGCGGTAATGACG GCAGATGTTGGCGAAGTCGCCAAAGACGAGATCGAGAAACTCCCCGTGTATGGGTCAGCGAGAGCGAACT ACCAGTTGGATCCAGTGCCTGATGAGCTGGCGGATATCATGAAGGACGATTTGAAATCGCAGGAAGATGT CGACGAGGAGCATGAGGAGGAGGAGGAGGTTATCGCTCCCATCTCGCGGAAACCCAAGCTGAACTACGTC TCGCAATTTACCAAAGGGGAGACCTTACTCCCAGCAAGTACGGACGCAAAGACAAGCAAACCAGAGGAAA GCATTGATGAACGGACTGAGAATGTTAAGGAGAAAAGCGATGATGAGGAGGAGGAGGATGAGGAGGAGGA GGGGGATGATTCATCCGATGATGGAAGATATGATCTTCATCCTGAATCGGAGATGGAAGACGAGGAGGAG GAGAAGAAGGAGAAGGATGAGCTTTATGCTGTTGATATGTTTGCTGATGAGATGGACGACATTGACACAC AGCTTGAGATGGCTTTAGAAAAGAAAAAGGCGGAGTTGAAGGAATTGGAAGAGGCCGAAGAGAAGAAGTC GCCGGAGCCCCCGCAGTCTGAGAAAAGCAAGAAACGCAAATCAGACGTGGCAGATATGGCCAGCATCTAC GATGAGAGTGGGAGCGTTGATCTATCAAGGTTTAAGAAGAAGCGATTGGAGAACTTGGCGGGGAAGCAGA AGAGCGCCGGAAACACGCAGGAAACTGGTATTCAGTGCGACCTCCAGGATGAACTCACACCGGAGGAGAA AGACAAGGCCAAGGAAAAAAAGAAGAAAAGGGAAGAGAAAGGAAAGAAGGAGGAGATCGTTGAGGTGGTC TCCACCATGATGAACAAACTGGAGTTCCTTGGAATCTCCACCAAGGGCCTCAACAAGTTCCAGGTCTTGC TCATAGAAATGGAGACTCGGATCCAGGATTGGAGGGAGGGGTTCCTGGAGAGCAAGCAGCTCCTGCAGCG CCTGGAGACGTCCGACTGGGAGCTCCAGCGCTACGAGACGGAGGCCGCCCCCGAAGGCTGGCTCTGCTCA TGGGACAGGACGCACAAGCAGTACTACTACACCAACATGGCGACCAACGAATCGCAGTGGGACTACCCGT TGGAGGCTGCGGATGAAGACGCGAAAGGGGCGGAGTCGACGATTACGAGGGAGGAGACGAGGAGTGCGTT CAGCTGTGCTGCTGCCGCTGACCGAGGATCGGTGAACAGCGGTGGGAATAGCGGAGAGGAGTCAATGGAC GAGGGCGACACCTCAGATGATGAGCCAGCCCTTCCTAAACCAGCAGAGATCCAGCTTCCACCTGCCCTTC CCCACTCGCCGACCCCGCCCCTACCCCCTATCCCTCCAGAGGAAGCAGAATCACCCCTCCCTCCCCCTCC TCTACCAGACGGCCCACCGCCGCCTCCACCACCTGGAGAAGAACCGGCTCTACCCCCATTACCCCCAAGC CCACCACCGTCCACCCCACCACCAGCACCTCCCCCGGAGGAAGGGGACACCATTCGACCCCTCACCCCGC CCCCATTCCTGACTGCCGCCTTGGCACAACCCCCTCCCCCACCCCAGACATCGGCAGTGGTGATAGGGAA ACCCCAGGTCCTCTACTCGGCGCCTGCAATGACCACGGGTGCCGCCACCATAGCTGCTGCACCGGTACTG GCGGCACCAGCTACAGCAGCCCCGGCACCGCCAGTACCTCAGCAACCAACTGCACCCCCTGCTCGGAGTA AAAAGAAAAAGAAGAAAGAGAAAGAGCCTAAGTTGGTGAAAAGCAAACTCCCTCACTCCCTGGTCTCCAA GTGGAGCAAGATCAAGGAAGAGCAGGAGAAGGAGATGGAGGAGAGCGAGGAGAGTGAGGAGGAGGACCTT GGAGTCCGCAATAAGAAGATAATCAGCGACTGGAAGAAGGAGCAGTTGGTCATGGGCAAAACGAAGCATA ACGCCAACTTCCAGCAAATCCAGGGTGACTGGAGAGAGAGGCTAAAACGAAAAAACAAACCATGATAACT GTTACCACATCGGTATTTTTGCCTTTCATGAAGCAGGTTTACATGTTTACATCTATTTGTATCTCTCTTG TGACCCTGTAGTCAGACTGAAACGTCGCTGATAGATATCCGTCACTTTTTGTTATTAGGTGTTGGATTGA AGATTGTAAGATATGACAAATAAGATAGAGCCAGAGAGGGAGAGAGAGATTGAAAGAGAGAGAGAGAAAG AGAGAGAAAAGCCAGAGAGTTTAAAGCATAGTTTTTAGTAGCATGCGTAATTGCTCGTAATTTACAGAAG TACAACAACTTTTATGACAACACCAGATGAATATTTGTCATCCAATGTTTAAAAGCAATTTCAACTATTG TACGTTAGGATAACATAACATGTTTCTGTTAAACCAGACATTCACATGAGTCTTCTTGTTAACAAACATG TATAAATTTGTGTGATGGAGCCTTATTTGTGAGCTTCTTCCCGATCAGTGGGAGCATTCTGGTATATGGG TCAAAACTCAATTGTCCTACTCGATCCTTTGACGAGGTCTTTTACCCTCACTTTTCCCTTCTCGACCAAG GTGTATTTAATTGGTACATACCAATACTGAGGAAATTACGATTGCAAGGCCCTCTGGAAGAACAGTATTG ATATCAATGAGTCTTCCCTGGGTAAATAAAATTATTATCATAATTATCTGTTAATAGTCGTAAGATAATT GAAGGCACACTACATTCAGTTTTTTGAAAGTGACAGGTTGGCAGCTCTGTACATAGGGTTATCAGGTTAT CAATTCTTGTTAGGAGTCGATATGGTCATTGTAAAAAAAAAATTCAAACCATGTCATTTTTTCTGTGGGT CAAATTGAACATGCTATTGCTTATCGTATTGCTGTATATGAAGCGGAAATATAAAGCATATAATCAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds