Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030991196.1 PREDICTED: Strongylocentrotus purpuratus probable E3 ubiquitin-protein ligase HECTD4 (LOC100890523), mRNA ACCCCTTTTTCACAACATAGCAAAATGGCTGCCTCCAGTGCAATGAAAAATACTGTTGTTAGACTTCGGC GGAATGTAACTGCATAATCTTCTTTTGCCATTTAGATGGAGGCATTTCTGAGAAGGTCTGCGGGTCTGTG TTCAATATGTCTTCAAACTGTGTAACAGATACAACGCAATGGCTATCAGTGAACGAAGAATCGTTGTTTT TACATGACGGTTTATTACGGGTAAGCGATCTTGTTAACTTGCCAAAACATATCAACAACGCAAGCCCGCA AAACAGCTCTGACGAAGTCGTTTCCTTCGACACGAAAAATCCAACTGAATTGAGTCACAGGCTAGTTTCT GTTTGTGAGAGACACAACAATATATATGCTTACTCAAGACTTCTTGAATACCGGTTAAATGCACTGAAAG GGTTATGGAATGCCCATCGCCAAATATCTAATAATGTGGAGCAGCTGGAAAGAGAGACATTCAGTGAAGA GGAAGTGGCCAGCGCCGCCGGCCTTGGCGGCCTGAGCTTGCTGAAGAAAGTCACTTGGCACGGTGCTGAA CCAGCAGCCTTTTCAAGCAGACTTGGATTACTCCTCCTGTTTCCACTTCTTCGGTCACAGCAGAGAATAA ATCCAGAGCTAAGCAGTGAAACTGCTGTTCTGCTTCTTAATTGCCTTCGAGATTGTCTTCCACTGAGCCT TGCTAAAGAACCTGCGGACTGTTTAGATGGACTGGAAAATCTTTTGAGTTCCTGGCTTGGTGAAAGTGAT GAGATTGATGTAATAGCTAATGTGGAACCACATGAAGAGCAACATGTTCAACAACTACCACGCCAGCTAC TTGCCTCTGCATTGGTTGCATTTGCCTGCGCAAGGGGCTCTACAGGAACGTTCATTCACACCACCCACCT CTTACAACAGCTTGCCCCATCCATAGGCCCACTGCCCATAGCTGACATCCTCCAGAGACTCCTGAGGCTT GAAGGGGGGCCAGGCTCCCCCTCTTACCTCCATGGTAGCCGGCACGTCGTGTGTTGGGGATTTGAGGATA TGCTGGGTGAGAAAGAGGAGAAAACAGAGGACAAAGAGAAAGAAAAAGAATCCAGTATCGGTAGAAGCTT GGCCTGTGACGGTGTCTTTCTGTACTGTACGAACGCAAGGGGGAAAGGTCTTGCTAAGATTGGATCTGGA TTACATGGAACGCTAAGAGGCTTTGTCTACACTCGTAACCCTGACCTTCCAGTAGGCTGGATTGCGTGTA CGGACAAGATACTGCTGCACCGCCCTCTGGAGGCAGACTCTAAGACAGAATCCCTAGGGTCGGTCATCAA CAGAGACACTCTCAAGGTGGAAGGTAATGTGAAGATGCCTGAGTCTCTGGTAAATGCATCTCAAGTCACC GTCTCGCTTTGCAGTGACGGCACCTACTTCTATCGGGTCTGGTGCCCTCCTGGTCCCGACAAGAGTGGCA AAGGTCAACCTGTCACGGCTGATCTTCTGAACATGAAGGAGCAAGATGGTGTGGTTGTTGCTGAACCACT TAGACCATCGGTAGTACTAGTAAGGAACGAGGACGTAGTGAGGGGTGTGACGGACCCTCTGCTCATAAGA CTGAGAACATTTCGGCCGGGTAACGCTGCTGCCCTAGCCCAACTCACCAACTCCAACGGCAATGCAGGCG GCAGGGAAGAGATCTCTACTACCAGCTGTGGCCTGACCCTGAAACTCCTGCGCAGGTCACCTATCTACTG CTGCGGCAGTAGCGTGGTGATTGTGACGTCGCCCCCTGGAGGTGGTAGCAGCTCAGCTACTCGGTCTCTC TTCAGTACTACCGCAGGCCTTAGTGGGCTCAGAACATTGGCGACAAGCATCTGTTTCAATCTTTCAAACG GTCTCCTGACCAGCAAGCTAGAGCTGATGGACGCCCCTGCATGTGCTATTGCAAGGGGTTCAAATGTACA AGGTCTAGGTATCTGCTATGACGAGCTGAACAACGCAATCTGGACTTGTTCTCCAGACTGGGTGGATCAG TGGCAGAATCCCGGGCTTAGAGCCACTCACCATGTCTGTAAACAGCTTGGAGTACCGCAACCTCCACTCA CAGACAGAGCACCACAAGATAACATGCTGGAGGTGTCAGAGGTGGTGGGTCTGCTCTTACACCACGTGGG TAGCTCCAGCTGTCACAACGTACACAGCGAGATGTACCAGAGCCCCGCCCTGGGGAGGCTCCTGGCCGCC CCGACCCCGCCCCCAATCACCCATCTCAGGAGACTGTGTGCTATACTGGAGAAGGCTGTGGAAGAAAGGA ACCTGCCTATCATCCAGTGCATGCTGGTTGTTCTTCAGGTATTTCCTCAGGTTGTCTTCAAGTCACATGC ATTCAATCCAGAACACTTGGATGAGAGAAACATCTTGGAAAGGACCAGGAAACTGGTCTGGGGTCTTCTG ACATCCACAGATGAGAAGTTCAGGGCTGAGAGACTGATAACCGAAGCCTGTAATGTCATCAAGACTGGCC TTTCGGTGCTCTTCAATGGTGCCGATCAGATGAACGGTCTCCTTCGTCAGCTGCTGAGTGAGGGAGACTC TCGGGCCTCCTTGGGTAAGCTTCGGGACATGATCCTGATGGAGCTAGCTCGTCAACTGAGGCAGACTCCC TGCAAGGAGACCTCCATTCACAAGTTCGATGAAGGGTTGGTCCAGTTGATCATGAATATATCAGAGAGGG AATCACGTCAACTTCTCACTCAGTGCCTCACCAGGAATAAACCAGCTGAATCTATCACATCTAATGTACC ACTTGCCAGCCCTTGTCAGCAGTTCCTAACATCACTGGAGATACACACCTTGCAAGGCATTATCATGAGT GATGAGAATGAGGAGGATGGGACCACCACCACCGGTGGTACTCCTCAAGGGGCTACCTCTCTCAAGCCCT GTTCAAAGGATGTAGAAAACACAGTCCTCAAGCTGGCTACTAAGATTTTCAACGGATGTGAACAGATTCT TGAGACTCTACTGAGCATCTGCAATGACCTGATGAACTCTGGTCAGGCCAGTCAGATGCAGGTCCTGGAC CGTGTAGTGAAGGGAACCATCCTGGGCTATCTCCTACCGGGTCTAGTCACAGCCCTACGTCATCCTAACC TGCGCAGTCTGGCCCTAGCTGAAGCCCTGGTCCCGCAAGTTGTAAGACTTGTGGTCCTCATCAGTCAGGT TGCCATGGCAATAGGAAACACTTCTTATCAGGAGAAGAAGATGGATAAGAACAGCTCTCAGCCTCACGAT GTTGTCACAGACCTTCTCGCCAGTCACATCAAAGACAAGAGTGAGAAGAATTGTGAGAACTACCTGACCA AGCTGCGAATCCCAGCCCCGTGGGCTGCCGGTAAGACGGTGGAGACCATTCACCCTGTTAGGGATAACTA CAAGTTCAGAGAGACTGTACACATCCCTGGTGCAAGATGTCTGTATCTGAGGTTTGAGCCTCGCTGTGCA TCGCAGTATGACTATGACAAGGTCGTGATCTATGCTGGACCCAACACCAATTCCAGGAAAGTGGTGGAGT ATGGAGGCAACACTTATGGGTACGGAAGCAGGAGTGTGCTTGGGTCAGGCTGGCCCAAAGACTTGGTCAA GGTTGAAGGGGATACAGTGACATTTAACTTTGAGATGAGAAGTGGTCGTGAGCACAACACACCAGACAAG GCCCTGTGGGGGTTCAGTTGCACCGTCAGAGCTCAGGAATCATCTGAGGACTGCACCAGTGGACTTCCCT TTGTAGCTGACTTGGCACTAGGCCTGACAGTTCTAGGTTCAAGCCTCCTCAAGGTTCTCTACGAAGGACC AGAGGTCACAGGTTCGGAGGAGCGCTGTCACGCCCTTCTGTCTTCCAAGCTGATTCAGAGGTGTGCTTGG CATGAGATGGTACAGCAACCTACAACAGGTCCATCCTCTGGAAGTAAAGAGAAGGTACCGGACACCAGTC TACCCAGGCTCAAGCTTTCTAAGGACAAGCTGCAGAGACTGAGGGCAATGTCTGGCAGGGCTGCTCCCTT CCTCAGGCCTAGTATCAAAGATGCCATCAACCCTGTTGTCCTTGAAGAGACCTTGGTGTCTGCAGCCATC AGACTACTTGACCTTGAACCCATGCTGAACTCGTTGAGCGGTACCGAGGGAGGTCTTACCGCAAGCAGCC CCGGCCAGAGTAGCTTTGTCAAGATGGTGGCAGAGGTCTTCAACAGAGTGAATACCCTGGAAAGACAACT TATGTTCATTGGTGAGCTAGAGCAACGTTGGGAGAGAGAACTTGATGACCTGAAGACTGAAACGGAAGCT TCTCAACCATTCTTCAATGATTACCATCTTCAAGAGGACAAAAAGAAGGATATTGAGACACTCTGCTTCA TCAAGGGTATTGACTGTGAAACTACCAGTGGAGAAGAGGCTGTCAAATTACTAAGGAACAAAATGAAAGA AGAGAGCAAGTCAGAGCAGGATGCCTCGTTGAAGATGACCAAGACAAAGGCACTGGTGGCGGCCATCTTG GATAGAGCCAACGCACTCTTGGAGGTTGCCATAGCAACGGAAAATGGGTCATCTAGCATCGGTCGGAGCG TATCTCAAGGCGGTGACGAGCTGGGTACCTTACCTTGGAATGGAGGCAATGGAGGTCAAACTTCTACCAG TACTAGTCAATTCTCCAGAAGTCTGTCCATGCCAGCCGATCTCACAAAAGCTAGACCAACGGCTTCTGAT AAATCGACCACCAGACCTTACCAGATGCGGCGATCCAGGAGCAGCGCATACAGCGGCGCTCCAGAACGCA ACCAGAACCTCACCAACTTACTAGATGAAATATTCGCCTTCATAGGAACCAAACTTACTCAAGCTGTATC GAAGGATGAGTTTCTGTCAGCGGTCAAGGCAAGACGTCAGCGCGGATGGTCAAGACAGCAAGCCTTGGTC CATGCCCATCAGCTGATGACCACTGCTGGTCACTCGGAGGGCTATGCTCATCTAGTGACCGCTATAACAT CTGTCCTGCAACAAGGGCCTAGGATAGAGGACTTGAAGTGCGGAGGTTTCGTTGAGACCGTCAGACAAGC CTTTGCGGATGCGATGACAGCCATCGTCCAGCAAGCAACACATCATCCTACAGACTGTGCCTACAGTATA GGGCTGCTCTGTACCATCCCATACACAAGGAGTGAAGAGAAATGCCTTGTGGACAGTCAGTTGGTCAGCT TACTGGACAGACTATGTAGTCTTGGTCATTCGTCAGGTCAACCATCAAGGCCAGAATCTCAGTCCAGCGG TCAGAGGGTCTCCGCTCTGGCTTGGGCAGGCTTTCAGGTGCTTGCCAATCGCTGTGTATCATGGGAAACT GACGAGGTATCCCAGGATGCTTTAGGCTACGCTGGTCTTGCTCGTCAGGTGTCGTTGCTCTTGACCAATC ACCTTGCTCGAGCGACGGAGAGCTGCGGCAACGAGGCTGCAGGGAGCGAGGCTCTGCAGGAGGTTCTAAG TCTGCTCAATAATCTTTCAAGGAGTCGTATGGGTCGTGCTATCCTGAGCCAGCCAGCCTGCGTCTCAAAG CTCCTCTCCCTCCTCCTTGATCAGCGCCCCTCCCCCAAACTGGTCCTCATCATCCTCCAGCTGTGTCGCG TAGCCCTCCCCCTGATGAGTGCCCAGGACTGCGCCCATGTCCAGCTCCCAGCGTGGGGGGCGGAGCTGGC CTCGGCTACCGGTGGCGAAGGGGGCGTCATTACCAGCGACCCCCCAGCTCGTATCGCCAGTCTACTACTA GCCAAGCTCGGGGATTGTGTAGTCCCAGGATGTCAGACCATCCTAGCCCCAGAGCAGCTTGGCCACCTGT CATCAGTGAGCTATATACCTGATAGAGAGGACGATCTGGAGGACCAAGATGGCCGCCTATCTGTCTTCCT TCACAAGAGGGAAGACCAGTCATCTAGGGAAGTCATTCAGGCTCTTCTGAGTTCTGAGGGTCGTCCATTC AGGCTGGGAAGTGGAGCTAACATGGAAAAGGTGCTGCGCATGGATCGTAACATGCATACAAATGGCAAGG CTGAGCTGTTTACCGAGGACGCGGCTACCGCTATCCAGAAAGCAGGCAAGCTGGCTCAAGCTGGCTTCTT GGTGAGCGTGGGAGCTCCGACAGAGACCACCGATAATGAGAATAATAACAAGGAAAAGCTGAAGGTCACT GCTGAAGCTGTCTGCAGGGAAAAGAATGCTGAACTTGCAAGAACTGACCCTGTGCGACCTTTCATCAGCG GCCATGTTGCCCACAGTATGGCGTCCGAGGTCATAGCTCTCATGCACAGCCTGCTCACAGCACCAGAATG TAACACGGCTCAAATCTGGGCCTCTGCTGTGGAGAGGGTGTTATCACATGCCTTGAGTCAAGTGCCTGTG CTTGTATCACAGCAAGCAAGCCACATGGCCCTCCTAGCCTCTCAGCCGCAAGGTCCAGGCATCGATCAGC TCCTCTCCACCTGCCGTCAAGTGGTGGCAGCATTCTGCGCGCTGGGTGGATTCCAGGACTGTGTCAAGAT GGGATCGACAGCTCAGGTTAGTCATGTGGGAGAAGTGGGGTGGGGGTGTCTTGGAAGGAATTGTGCTTTA TACATGTAGATTACCGAAGTTGTG
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds