Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030976650.1 PREDICTED: Strongylocentrotus purpuratus PHD finger protein 13-like (LOC115920592), mRNA GGTCACGCCCTTTGAACTCGATCAATTCACTGAACGCGTATTGTTGAGGTTTTGCTGTCAGATTGGCGAG ATTTGGAACCTAAGACATTGAGAAAAAGTCTGTTTTTGGAAAATCTACCTAGTAATTCTTTGATCCATCA GTGGAATTCAAAAGAATCATGTCCGCTGATTTTCTTACTGCTCCCATACCTTCAAGGGTTTCTATCATGA AGAAGCCGAAGACAGAGAAAGAGGATCACGTGTCCAAGCAGCCTGTATTGAAGGACTTCAGTACGTTCTG CACTTGGGTACTAGACTATGAAGCATCTCTGCACAATGGAGACATACCCTATGTCCCTAAAACTCCTGAG CGAGTGAAGAAGAGAAGCATCAGTCCGCTCGACAGTGAGGGGAACAGCGTTGGTAGCGGAGCCGATTCAG ACCTCAGCCCCAGGGAAAGGTACTCCAAGAAGGGCAGAATGAGCAGTGCACGCGAAAAAGACGAGGACTG GAACCTCATCACGTGTTTCTGCAACAAGCCGTTTGCCGGGCGTCCCATGATTGAATGCAATGAGTGCGAG ACATGGGTCCACCTCTCCTGCGCCAAGATCCGCAAGACCAACGTGCCAGAGATCTTCATCTGTACACACT GTAGAGACACTCGAAGCAGTATCCGCAAGTCAAACAGGCAACGGGAGCCAAAGAAACAGTTCTCAGAACT CTATGGGCCTGGTGAAAGCTAGCAGGGGGATAGCTTCATAGACTTTTTTTTGTAAAGGAACAATTTTGAG AACCTTGTGGCATTGTCATCAGAGACGGTGCAGCTAAGAGGTGGACAGGTGACCCCAGGTTTGTGGACAA ACCGCATTCTGTAGAACAACTTCCAGAACTTTGTGGTCCTGGTGAAGGCTAGCAGAGGGACATCTCCACC ATCTTTATCTTTTATAGGAACTATTTTCAGAACGTAAGAGATGGAGAAGTGACCCAAGGTGTTTGAAAAG AAAAATCATTCTGCAGAACACGGGCCACAGCTAGCAGATTGATCACTACATTATCAAGGGTCTAGGAAGA AATGTCCGAAGCCATGTCCCAGGGAAAGTTTGCAGATCACAGGCTGTTTGAGGTTGGAAGAACAACGTCA TGACTGCGCCATTATAACAAGTGTTCAGTCCATACAGAATGACCACTTCATTATCAAGAGTGTACGCAAG AAATGTCCAACGCCCTGATCCAGGGAGAATTTGTTTTTAACAGGTACCACAAACAAAACGCCAGTAAGCA GTGTTACTTTTATCGGCTGTGGACCTGATAGATATGTGTCATTATGAGGAAGGAGGACAAGTTTATCTTT TTGTTTCATAACTTGTTTCATTTTAATTTTTAAGGGAGGCAAATTATCACTGAAAATGTATCCTCTTTTC ACATTGTCATTTAACAGGAAGCTTCTAAGGTGCTCTATATCATGCTCAAAATACTTTTTTGTGCAACTTT CACTCATTTTTAATATATTGAACAAAGACATACATGTACTGTACAAGAGAATGTAACTACATGTAGGTGA AATACAGCTGCTTTTGTACAAATGGAAATGTCTATCTACCAATACATACATAATAAATAATAATAATAGT AACATGTACATTTATATAGCTCAAGCACTGTACTATTATTACCTCAGCATTTCAGAAACTTCTTCCTACC GGGTACATATTTACATGTACATCACCTGGCTGGGAGTTGAACCCCATACCTTGAGATCCATAGTTGGGTG ACTTATCAAGTAGACCACAGCACCTCTACAACCATCTATTCCATTCCCCAACTATATCATTGGCTCAGTG GTAGAGCAGTGGTCTCGTAACAGGGAGGTCCCGGGTTCCAAACCAAGTCGTTGCCATAGTTTCCTTTGGT AAGGCATGAATCTTCATTACCAAGTCCCTTTGGGGAGGACTTTAGGCCATTGATATCTTGGTTGTTTACT TACATGTGCAGGCATACACATGCTTTCTTAGCTGTCTGGTAAAAACAAACAAACAAATATTATCTTAAAT TCTATCACAACCCCTTCACCTCATCTACCGGTAAGCCCATATCTTCAACACATTAATTCCTGGAGCACAC ATCACTGAAGCAAATGTTGCATCACAGGAAAAAGATGTACTTTGTGACATGTGACATTAGTGGAATGTAC ATTTCAATGGACTTTTGATTAGTATTAATAAGCCTCATTCATGTATAATGTAGTAAACAGCTTTTTTTTT ACAAGGATGGAAGTGTAATCCGCTTCACGTTTCTGTTTCCTATACCGCAGAGCTAAGTGAATGTTGCGCG CTGTTGTTCATTCCCTTACACCTTAAAAAAAAATGACATGTATTTTTTTTTTTTTGCTGCGATTCATCAC GTCATTTCTGAAGTTCTCTGAACGTAACATATTTGCGTTTGTTACTTATTACCCTTATGCTGTACATATA AATATGATATTTGCAGTCACACACCTTGAGGGAGACGTAACGAAGTGAATACCTGAAAATATTTAAGATA ACTAGATTTCTTGAACAACCATTATTCACATGTAGAATATTTTTTTCAGTAAGGGAATTTAGGAAATTCA ACTTTCTTTCATTTTCATCCATTGACTAGATCAGTTTGTCTATTTTCCATTTGTTTCATTTTCATCTGTT TTGATTTTAATTTTTTACTGTAGTTACTTTTTATTTATTTATGTACCGGTATTTATTTATTTAGTTAATT ATTTTCTTTTCTAATTTTTCTGTTTTGCTTTAAAATCCTCCTGATCTCTTAATTTTCTCTCAGTATGTAA CCGACGTAGAAATGTATATAGATCTAGAAAACGTCTTCCAATGATGAAATCAGACTAATTTAGCCAAATT TTACAGCAATTTAAAGAACAACGTTGTTAAACATACCACCATGCTAAGGCAATGTGATATGCTTATTGTA ATGCTTTATACATGTATATGTTCACCTGAGCTGCGGTAATTCTACTCAACAATTTTGCCCGTTTTATTTT AACAAGCTGGCCGATTCACAAATTTGTTTGCCCATCGCAAAATCTCGGCATACAAATGTGGGGATCCTGT CAGCTTCGGTTTGCAGCAAGCACATACGTATACACTGTACATCAGGGGAAAAATATTAAATTTTTTTTGG GTGGCTCTTTTTGGCACTTCAAGGGCTAACTCGCCCCTAGCCCCCGTGTATTTTCCCCCCGTTCCACATG TAGGGGGAGAAGGAGATCACTTTGGAGAGATATTATTGGAATTAATCGGCCACATTCCGGACTACTTGAA ATAGAGAAGGTTGAGTTCTGGGTAAGGTGAACAATAATATTTGTGAGGTTTTCCGTTCTTTTTATGTCAG TGCGGAAGAGTATTATGGAAAATATATCCACTGAAAAGAGTGGCTCTTGAGATGCTCTCCTATTTGAAAC ATGACAAGCAACGGCTAAAGTTTGTGGACCACAACCTCATGCCCATGTCTGTGTAGTCCCATGTACACAT TTCTGTGTACAGCGCATGTGACCCATTAGCAAGACTTGGGCAATTCCCAATCATTTTGATGATTCCAAAA CCTTACTGCATTACACCCATACTCACATGTATCTGCTATATGATCAACCTTTCCCAATCGCTTCCACACA GTTCTTTCACAATGCAAGCATATGACCAGAACTCAACTTTGTCTTGGAGTCCTGGAACATATGTAACTTG ATATCAATATCGTTGAACAGACCCAATGGTTATAGAGCGCAGTATCTGGTTTTGCCCATCTTTGCTGCTG TATTAGATGTTATATATGCATACTGTGTAAACTGAAACTGAATAATATATTTGACTGAACAATACATGTA TGAAAACAGGACTTTCACCTTTTACTTACAAAAGTTACATCATATGTGTGACATGAGGTTAAAAAAACTA ATTCACAGACAAAAAAATACCATTCTCAGTCTTCTAAAAAGTTTCATTACGATCATCTTATTTGCTCAAC GTTTCTTTTGATCTCTATCTTTTGTTTTTGCATAGATGAAACGTTTTTGACTCCATATAATGAAATTTGT GCATAGAAACGTGGCTATTGTTAATATTCTTTCCTTTGGTATCTTTCCAAATCTGTCTGTGCTGTGATTT TCAAATTGTGCCCAAAAGTTTGGACAAGCAGATATATAGCCGGGTAATGATATGATTGCAGGGCCCTCGG GGAGAACAGTACGAATACTGATGAGGCTACCCTGGGTAAACAAGACATATTATTATCATTATTATTATTA TTATATAGAATCTAAAGTTTTCTGAGGGCCAGAAGCTATTTCAGGCTCAGGTCGACAATGAAATGGGGAA AGCAAAACAGAAAATAATACCTTGCATTCCATTTGTTAATTACTCTGACATACATGTATTATCATGTGGG GGGGGGGGGGGGGGGGGTTACAAAATGAATCACAAATGTATAACCCTTGCCCTCTATTTTTTGACGACAA CCACCAAATTCCCCTTACCAAGCATTGCTTGAGTGTCTATTTCAGAGTATATATATATATGTTTTGTCAA TGAAGAATTACTTGTTTAGGGTCACAAACTATTAAAGGTACTATGTCCCTTTTGCAGCCAACCTCAAATT TTTTAGTCAATTTCCCACTCGAAGACATTTTCAAGCCCCACCTTTTTTAGGGAAGTTATAAAGTAGCATT ATCTTTCAAATGCCGTTGGAATTTAACCTTTTCATTTTTTTGGCCTGCAAATGGGACATAGTACCTTCAA GATAAAGTCACTTTGTATAATATGTGATGAGAGCACCATTTGTACAGGGGGCAGGATTTGTACAGAACTT TTATATTGGTATGTAAATGAATATTTTGAAGTTTTAAAATTTGTACAGAAATTATGACATCATTATATCT CAACATTATAGAGATGGACGTACAGTGGTCTTAGTATGAAAACTGCCATTTATATTTTTGTTGCATCGTT CATACTTATATTACCATGAAGATTTTGAAAATATGACTCTTTCTTGTATCGGAGAAAAGAAGTGGACTTT CTCTGTGGAAAGACAAACATGTACATTTTCAAGTAGAAGTGAATAAATTATATGAATTTAATGACC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds