Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038221187.1 PREDICTED: Patiria miniata uncharacterized LOC119744960 (LOC119744960), transcript variant X1, mRNA AACACGTGGTTTGTCTCGCTGGTATCAGGGTCCGTCCACTGCATGCAACACGCACGGGTGATTTTTAGTA TTTGCCGTATCTCGACATCCCGCGCTGAAATGATCTGTTTGAAATCATGTGTTGACACAGTCAAGACTCA CGAAGTAAGAATGTTAGTAAAGGATTCCCCAACAAAAAGTTTCAAAAAGAACGACTGATATGGACAGCGA CAACTCGGAAACAGTTCCCAAAGGGGAAGTTCCGACCGAGGCAGAATTTGCACGGTTGCTCTGCGACAAG ACGTTTGTCGATTACTTCAACACGTTCCTTTCACTCCCGGTATTCTCCCAGCGTTTGCTGTATCGTTTCA CTGAGCAGAACTTTGAATTGGATCCACCTATCAAACGGACTCAGTATCGTCTTGATCGTCTCAAGTTGAT GCGATGGGTTCGAACCCAGAGGGCGCCTCTCTTCTTCAAAACCGACCTGTACCTGGAGTTTCTACTGTGC AAACAACTGCAGAAGACTCAGCTACATCTGTCCTGCCTTTATGGAACAGATCAATCCAACGCCAAGGACA GGATGCTGGACCGACGCCTGATGTCTCGCTGGCTCAGCCGGGTCTCCGGGATGCGCAAATTCCGCTCCTT TTTGGACCAAACAGCGGGCGAGAAGGCGCTCAACTTCTGGCTGGACGCCGAACGGTTCCGGAAGACCACG CACTGCATGGAGGAACACCGGGTCCTGTTCCGGCAGATCGAGGCCAAGTACTTCAAACACGGAGGCATGC TGGAGTTACCGGAACACGCGAAGTGGCTTGCTTCCGTCAAGCCGGGTGGCCGAGATGGATCGAGTTCGCC ACTTGTTGAACCTGGATCACGTGCTCGAGAACGACGTCAGAGTCACTTCCTTGGCAGCGGAGTGGAGGTA GAATCCCGCCTGCCAGGAGGCTCTATCTACGGTGACAGTCATGAGTGGCTTATCGCTCCGGACGCTTTCG TCGTCATCCAGGGATTCTTCCTTAAGACTCTGCAGAACTACTGGGTGTCTCGTTACATCATCCATTGCAA GACCAAGTGGTTCGTCCGCGGTGATGTGTCCGTGTACAGACCCAACTGCTACGTGGTAAAAGTCCGCAGT CTGTCGGACCTCGTGGATGAAGAGGGCGAGGCACTGACGGGGGAGGGTATCGTCAAGTCCAAGCAGTTGG TCCGGGTTGGATCGAGGTTGAAGAAGCAGAGTGCCTTTAATCTCTTGTCGATGTTCAGCTCGCCAGGCGT GCGACGCTCCGAGTTGGCGGCTATTTTGAAACTGGAGGACACCGGAGAAACGCTGGGAGTAAAACCTGAC GCGGGACAGTCTGCGGAGAACACAGAGGGTTGGAAGACGGAGGACTTCCCGCTGCCCACCATCTCGGAGG AAAGCGGCATGAGCGATGAGAGCAGGAAGTCTTCTGCCAGGTCGAAATCAAGTTCTTCTCCTGGTTTTGC TACGCCGTCACCCTGCCCTACGTCACCCGAGAAATCTATATCAGTTTTTAGCTTGAGCCCAGAAAAGACT CCTAGTAAAGATGATATGAAAACAACTGGGGCGGGGTTGGAAGTATCTATCGAGTCACCAGATGGCAAAA AAGATGTGATTTCAGAAGTATCTATCGAGTCACCAGATGGCAAAATAGATGTGATTTCAGAAGTATCTAT CGAGTCACCAGATGGCAAAAAAGATGAAGTCCAAAAGGAACTTCCTTTCGCAGAACCATCCGAGAGTCGG CAAGGTTCTCCCTTGGCACAGGACGGGGAGGGAAGAATCACGCCCACCTCGGCAAAGAAGCGTCGTAGTA GTGACGTCACTGGTCTGTCGAGCGCAGACACAGACAAGCTTATGTCCCGATTCCCACCCGGAAGGATGCG ACGCAGCAGCGTGGCTGTGCCTTACCAGATCAGCCGAGATTCCAGCTCCTCATCAGTAGGAAGAAGCTCT GTTTCAGGTGATTCCATCCACACGCCCTCCCTACGCAGAATGTCCCTCCAGTCGAACACAGGTTTGGATC CCTCCTCTAGCAGCTTAGCTAGTTCCAGAGGAAGTGCTCCGGCCGCACTCAAGAAACCCAAGCCGCCTCA AAGAGCAAGGGCCAAGTCCATGGAGTTCCGGTTGGCGGATTTCTCGATGATGATCAAGTCTCTTGATGCT ACCGGCGGTGCTGCTGCTACCAGTGGTGACGTGTCCGACATTGACAAAATCGCTTCCATCGGACTACCGC AACTTGAGGCTGACATCGAAGCCCTGCAGACTCAGAAAGAGATAGATGAGCGCAAGAAAGCAGAGAAAGC TAGCCGGAGGCAACGCAGAAGAGGTTCTGTGATCGAGGATGATCAAGCAGGTCTTGGGGGTAAGCTTGGT AAAAAGGGACACAAAACAGGGAAGGCATACCTCCAGCGCGGTCGCAGAGGTTCCAACGCCTTCAGACCTT CTGGGAAACAACTCGCGCAACTTACCCGAGCCAATCTGGCACTGATGGAAGCCGCGCACCGCGGGAAGTG GAAACCACCAAGCCTGAGCAGTCGGAGGAGTATCTCAACTCGCGAAGGCAGAAAAATGGGTTTCGGTCAG CACCTCGGAAAGTACGGCCTTCAGAAGGACGAGGTCGAGAGAGTCCAAGAGCCGACCAAAGATTACAACA AGCTGACGTTTCAGGAGAAGCTGGAACAGGACTCGCGCAAGCTTGCCAGGATTCCTCGGCTGTCGCCCTC TCAGATGCTTGGCCCCAGCGGTGCTGACATTGAAGCCGTGGGCACGCTTGCTGAATTCACTAAGGACAGC ACCTTCTCTATCGGTTCAAAACTCCCCAACATTAATTCAGAGGTCCATCTCAAACAGCCGGCAGCCATGA GCATCTGCCAGCCTTCCTACCGGGGCTACGGTCTCGGTGAGGTCAACTATCGCCAGAAGCACCGTCTCTT GATCGGCGCGATCTCATCCGACAAACTGGCAGGAAATCCTCTGTACAATTTCCTCCAAACGCGCCATCTC GAAACCGAGCTGAGTTACCTCAAGTTCTGGCAGGCTGCTCAGGAATATCTGATGACCGGGACGTACAGCA GCGACATCGAGGGCAGCTTGTCCAGACATCGTCTTGCCAGGCAGATAAAGGCTACCTTCCTGACACAAAC CGGGGAGTGTCACATCTCCGTCGGTGATCGCTTAGCGAGTGAGTTGTGCGGACAGCTGCCACAAGACACA GCGGATGAGCTCGTAGTGCACGCTCAGAACTTGGCCTGTGAAGCCCTTCAGGAATGTCTGACCAACTTCC AAAGACATGATCTGGAAGAGTTCCTCTCAAAAACGACATCTCGGAAGAATTTCCAGTTGGACGCCTACTC CCGACTAAAAACTCGCCCAACGGGCTTCCCGGACCAACTGCCATCACAGAAGGGCGCAGGGGCGGACCTG CTACCGTCCATTGAGACCTCGAGCCACGCCATCAACCAGTTGATGAAGACGGCCCGCGAGAGCGCAGCAG CGGAGGAGGACGAGAAGCGAAGTGTGAAGGTCCTGGGAGCGGGGACCGTCAGCGCGCTGGCCCCGTATCG AATGTGGAGAGCGCTGCAACTCGCGGAAAGTGCAACAAGGGCCGTTACTGAACCAGTAGTTGTAAGTGAT CCAAGCGACCCAGATAGCGACAGCGAAGACGAGGGTAGCCTTAGGCGAAAACTTACCACCGTCTACCGTA AACGCAAACCAAAGCCGGTGAAAGAGGTAGGTCCTAGACCTTCGTTCGGTCCCTCAAGCCAGCGTTCCTT GGGCATACAGCGGACCATCCAAGCCCGGGCTAGTAAGCACGCACCGGACGATGAGGCAACGGCTATGGGC AAAGCGGTGTGCCGAGCTATCAGGAAAGACGGCAAAACCATACACAGACCACCAAGGCCAAAAGTCTTTC AAGAGGTTCTCCGCGATGCCAGCCATCAGGAATTTCTGAAGAGATTCCTGGCCCAGCGTAAGTCCGACCT GCCGCTGCAGTTCTGGCAAGCCGTGGAGGGGATGAAGACGTCCTGTAGAGACGCTAAAAGTAGACAGTCC AAGACCATCATGATTGTACGCAAGTTCTTCAGCAAGGCTAATGACTTCGGCAACGCCCTACAGTGCGACG CTGAGATAATCCAAGAAATCCCCCACCTAGAGAAGGTGACGCCTCAGATGCTGATGTCTGCCCAAGCCTG CGTGGCTAGGAGCATGGAGGAAAACTGGTTTGGGCTGTATCAAGACACATTCCCGGATGAGGCATCAGAC GAAGAAAGTGAAGAGGGCAGCACCACGGAGGAGGAAAGACTGGGCCCACGTGATAAGAACAAAGCATTAT GGGCAATGTTTATCAACAACGTGACATCATTCCGTCGCGGATTGATGAACCAGGCCACGATGGCTGCCTT CAAAGCCTACTTCGCGAAAGAGGTCCAGCGAGAGATGGAAAAACAGAAGCAGACGGGAGTGCAGATCAGG CGCATGATCAGTAACAAAGTCATCATCGTGGAAAGACTCAAGAATGACCTCAGCTTCTGGGCAGAAGTTG AAAGATTCAAGGAGCTAGCTGATTCTGCAGCCCGTGCTGCAGCCATGGGCACCTACACACTGGATGATGA AGAGTATGTCCAGAAGAAAGCCAAGGCGCTCATCGATTGCTACATAGACTCACAGGTGCCTCCAAAACTA CAGATCAACATTCCCCAGGAGATAGCGGATGAGATCTTAGGTACCTTCCAGAACGGTCTGATAGAGCGAG GCCTCTTCCACGACGCCGCTGTCTCCATCTTCAGTGTCCTGCTCTACTGCTGGAAAAAGTTTTGTCGTGA GAGGTTTGCTCCTCCCAGCAAGAAGTCCAGCCGGGCTGCCATGTCCACTGAACCACCCAAGAAGAGGAAA CGAAAGAGGAAACGTCACCCTTCCACGCCACGTGTAGCTGGTGTCAAGATCAAGACCATCACGGGCACAT CAGTTGACGACCATCCCAAGATGCAGTTCAGCCTCCAGACAGGCATCCAGCTGATCCTGCCTCCCAAGCC CCCGAGCTACGATCATGAGCGGCTCCGCGCCATGATCCGTCAGTTATACCCGGAGGGCGGCCAAGCCGAC TCTGCCCACAGCGACGACAACAAACTACTGCAGCTGTACCAGGTGGCACAGCAGCTGCAAGCGCAACAGC AACAGCCTGGGCAGGGGAGCTACGCGCAGCGACGACTCAGTCGATCTATCGGACAGCACCTGCAAATGGC TGCCAGAAACCTCATGCCAGGCGGGCATGGTAGCTATTGATACAAGTCTGTAGAACTAACCGAAAATTTG GGAAGGGGGGTGGGGCGATAAGGACATGAAATTCGACTAGCAAATAACAGCCACAAGGGATCAATTTCAT GAAGTTGCTCGGCAGCAGGCATAGCTTAGCATTTGTTCTTGCTGAGCAGATATCAGGTGGGGACCAGCCA CAATCAATGTACATTACATCAGTTTGACTGGTAACCCATTTTTGCTGAGCCAAAATTTCGCATGCTTAGC ATCTCCAGGAAGTTGGGCCCTTGGTGATAAATATCATGGCTTGGTTGTGCATAATTCACCACTCCTTTTC CAAAACAGCTACCGGAATCGAGAGCAAGTCATTCTGAAACTTTTGAGTATTCACCTTTAGAAAATTCAAC AATTATAGTTCCAAATGGTATTTTTGTCTGATGTATTCAAATATATGTGCGTTCATGGGCTCAATAAACT TGACAAAATTGAGTCTTATGACCTGTTTAAGAATGCTTTAACTTTCCTAGAAGATTTTACTAACAAAATA CACATTATAACAATGTTGATAACTGAAACATTAACTTAAAAAGTTGGGAAACATTGAAACGTTTTGACTT TGAAAACAGGATAGTTGAAAAACAAGCTAAAGTTTGTAATTTTATTCTAAGATAATCCATGGTATATACA TAAATAAACATAACAAAACAATTTGAAATAAAATATCATTTTCGAAGAGAATAATATATGATTTGTGGTA GTAGCAAAGATTCATTTTCATAAGGCACAGGGTATGCATTGAGTGTGTTACTGTGGAGGAGGAAAGGGCA TCCATATTTATTTCAATATTTTTAAATAAATATCCTCCCCCCCCCAAAAAAAAAAAAAAACCAAAGGAAC GAAGATATATTAGATATAAACAAATCGGACAAATTAATTGGATACGGTACAGATGATTTATTTCAGAGAA ACAGTAAATACACATGCCATTTCAAAATTGACAGAATTGAGGCCAAGACAAGGGTGACAAAAAGCTTGGA ATATGAACCAAGCAGGTTAGAATGTCATAATATATGTGCTTATTTGTGAGAAAATAAGAAAACTGTACTG GCTATACTGTCAAGACTTTATTTCAGGATTTCATACTTGATAACTCTGATACAAAATATGATTCTCTATG ACAGAGTTTATCAACATACATGTATTCATAAGTTTCTCCAAAACCTGAGCTACTCTATCAACATAGATTT GGAACCAATGACAGCAAGTTAACAATTATAGAAAAAAACTGATGATCAATTCTGGAAATCACCAATGTAC ATGGCCCCAAAACTGTCAATTACAACAGAAATCAAGAACTCAGCACAACATTTTATATTCTCACTCTACA CTCAAAGAAGGAACTACACTTTTTTAGTAACTGCATAGCATTTGGTGTTACACAATATGAAAACTAAATT GAGATCATCATAAAGACTTGCATTTCACTCGCATTTCAATTGCATTCAAATTAAGTGTCAAAACTGCTCA ATTATCGTTGGGAGAATTAACCTGTATTAGTAATTAAAAACTATCGAACCAATTGCTGGAGAACTAAGAA ATGCAGGAATTAAGAAAATAAGACAAAATAATAAGGGGCAATGAAAACCAATGAGAAACCAAAAATATTT TTTCACGAATTGAAGTTAAACAGTACAGAACAGCACAAGAAGAGTTGCATGAGATGAATATGAGATGTAC AAACGTAAAAAGCAACAGAAATAAGTTTCAAAGCCAAAGTTAAGTACCACAGAAAATTAAGTTTAAGGTT CCTTTCCCCATGCTTTTCAACAATTTCGGGTTTTTTCTCTTAATAAATTTTCAATTTGTATGTTCTATTC CGACCAATAAAAACAACCCCTTGTTTTTCATATTTGGCCATCTACAACCCCTTGGAAAAAAAAGTGTTGT ATTTTGGACAGCAGACTGGCTCCCGGTCCATACATTATCGATACTGATTATGGGGCGGGAACCAGCCTTC CCAATGAGAATCGAATTATTGTCTGGCAGGCAGTAATTGAAAAAAATTGCAGTAAAAATTCAATAACTAC AGACGGGCCAAATTTTTTTCAGTCGATATCTCATTCAAAATTGAATAAGTTTGGATTTGCTAGAAAAAAA TAGCTATTTAGAAAAGGATTCTACTTTTCGGAATGAACTAGCATGGGGAATGCTCTTTTAACACACAATT GCGAAAACCTGCATTTGTCTTTAATTACAAGCAACCAAATATTCTACAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds