Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041598482.1 PREDICTED: Lytechinus variegatus thyrotropin-releasing hormone receptor-like (LOC121407416), transcript variant X2, mRNA GGATAATTATAAACCCGAGCACGTATGTTTGGATCATGCTTGGATCATACGAGTTAACCAAGGGGCACAA CTGTTTCTCCCTACATCTTCCAAATTCTTCTCATTAGCAATGTTATGTGGAGGCTACTTCATTGGTCAGT AACTGTTATTCGAGCGCCTTGGGAAATAGATGTAATATTAATTAATAACTGATATTGAGTCTCACAGCGA ATGCCATAGCAAGGGGAACGAGAGGGGACGATAAGGATCAGAAACGAAACATTGTGCAACTGGAGATCCT GAGGCCTGGACATTCTGATCATTTTCATAAGAACGAGGCACATAACTCTTAAGACGGAGGCTCATGGAGA TATTGAACGCAGGAAAATACATCACATATAGTACAGAATTCCCATAGCTCTGTAGGTAACTGCACTGTTG GTTGATTTCAAGAGAACTACTGCCAATCTACATTACGTCTTTGCTAAACAGATTCTCTTATCTTGGCCGG ATTTATTCACCGTCCCCTTCCGCTGGAGACAGACCGCGCTATTGTGAGGCGTAAGATTTTCCCACGACGA GTCCAGTCGGGTTGCGAGTGACCCCTCGGGAACTGAGATTTGAGTTTCCATCCGACTTCGAGGAATGCAC ACGGGCCTGGAGAAAACCTAACGTATTAATAGATACTTTGAGAAGGAATCTGTGAGGAATATCGGGTCTT TCTACTTGCTTCTTGGTAGATAACATATTCACATCTTCATTAGATAGGCACTGTGTGGAGGGATTGAAAG GCGTCATTAATCACTGTTTTCCACCATGACAACTCGTTAAAATGATATTGTATAATTTTTATCTTTATTC ATCAACCGCCATAAGCCTTGTGAAGTTCACAATGGATAAAGCGTGAATTAAATTGAAAAGACGTCTTTAA TCGACCTCGCGTCTGATTAATATATTTCGGATTGTGGATGATTAATCGTAGTGATTATATTTCAGTTCAC AAATCCAAAAATATTGTGTTACTAATAAATCAACGTATTTTCAGTATCATCTTTATACATAATCATGGAT GGGATCACGGTTGGAGTAGTGCCCACTGCTGTTACAGAGGTGAACGTCTATCAAACAGTCATTGTCGATG TCACTCCAAACATGTCGCTTCTGACTCCAAATGCCACCCGAGCATTGCCTGAACTCGAATATTACACCCT TGATTACAAGATCATAGCGACGATATTCTACTTGATCCTTGGCGCAGCTGCAATCATCGGCAACGCGATG GTGATCATTGTCGTTCTAAGAGTGTCTCACATGCGGACGCCGACAAACTGTTACCTGGTGAGCCTCGCTA TTGCCGATTCCATGGTCGGAGCCATTACCATCATGATGCATTCCGTACCGGAGAATCTGCTACCAAAGAA TGCATTCATCTACGGTGCCGCCGGCTGTCACTCCATCATCGCCCTCGAGTATCTGGCTTTCAATGTATCG GCTTTGTCAATCACTGCTTTCACTATTGAACGGTACATAGCTATCTGCCATCCGATGAAGGCCCACATCA TCTGCTCCGTGTCAAGGGCCACTAAGATCATCATAACTCTCTGGGTATTCGAAATCATTTACTGCTCACA GTGGTGCTTCTTACTCGAGTACAGAGAACAGGAGTACGTCGGTGGACATATCTTTGGGCGTTGCTGGTAT CACATGGACAAAGTAGCCTACATCAATGGTGTTTATTTAGTGGACTGTTTCTTATATTACATCGTTCCGG TTGGTGTTTGCATCCCTCTGTATGCGATCATTGGGCGGGTTCTCTTCAGAAGTACTATGACACAGAATGG CATAAGGAGGGGCTACGAGGTTGGTTCGAGGGAGAAGGAGAATGGAAATACGACACGGTTGCGTCTCATG AGATCGAACGAAGGCAGTAACGGAAGTAACTCACCAAGACGGTGTAAGGATTCAGGAAGCACAGCTGTCT CCTCCAGAAAACAGGTTATTAAGATGCTGGTGATAGTGGTTGCCCTGTTTGGTATTCTTTGGGCACCTTA TCGTATGCTAGTCGTCTTTAACTGGTTCAACACACCGGCCAAGCAGTACTACAACGAATGGTTCCTCTTC TTCTGCCGCACCTGCCTCTACCTGAACAGTGTGGTAAACCCGATCCTCTACAACTTCATGTCCATCAAGT TCCGACGGGCCTTCACCAAGCTCTGCACCTGCCGCGCTCTTGACCGCAATCAGTTTACCTGGATGTCTAA CAACGACCCCGACAACACGGCCACCACTAGGGCGATCCGAATGAGCTCTACTACCAATTTCGAGACAACT AGGAAACACTGCGGACACTACAACGCCAATCCCAACACGTCGGCTATCTAAACAAAACGGAACAACTTCT TCCAAGGTACGCCACCAGATCAGGTTCCATCTACTGCGCCTACCAGGTCCTGATCGCGTTGCACGATGAA TTCGGTGTCTGCGGTGTCGGGTTAACACCGTATAATCACAAGGGTTGCTTCCCATGCAACCAGATCTGTG AGTTCTTGCTGAGAATATTTCAATAAATTTCAGCGGCTCAGGTTTTGGACCGACATGGAAAAGGGCGATG AGCCTGAAGTTCGGCTTGCCCTTCATGACGTGCAGCGAGTGGCCAGTATCTAACCTTGACATTAGTAGCC TTTGAAACGCTTTGCTCGGTAGAGACAGGAAGAATATACACGACAGGAAAGATGATACATGTTTGCTTTT ACATGCTTTGCACACTGCACAGTATTATTCGTGGAAAACATCATGGTAGCCTACCGAAGCATAAAGTTCA TCTCATTCAAAAGAAGGGATCATCACTCCCTTGAACTTTTAGAGTTGGTATCCTGTGCCAAGTAAAAGAA ACTGTCCCATTTCCATATTTATAGAAAAAGGGCCGTCACCGAGTAAGAAGAATCATACGCAGATATATGT GTCATGTGTAAGGAGAGATGTTATTACATTGCAAGTATTTAAGTGGTGATTGGCTGTTCACTGGTCACGT GAGCTTGCATGATGCTCAAATCTCACTGGATGAATTAGTCCACACTGTTAAATACCTGGTCCACCCCCCC CCCCAAAAAAAAAAGAAGAAGATTCGTTGACCTAACAGGAAAGGTCAAACAAGCATAGCATTGAGAACTT AATCGAGATCGGTTCTAAAATAATTCAATGCTGGAAAACATTGTTTCATTTCTTATGAAGCATGCAAAAT CAGAATTTATATTAGTTTATTGTAACCAAGGGGGAGCTTCTTTATCATATAATCTTAAAGCAAATTTCGC TAGAGATATGCACATTATATAAAATGTACTAGTGAGGAAGGATTGAATATCAAATGCACAATTGCTTACA GCCAAACATTTAAAACAGTGTTCGATACCTCAAGAAGCATAAAGTCAAAATTCATTACATTTTGTTGTGA TTAAGTGGGGAACTTCATTATTATTATCAAATATTTAAAATCTGACATATTGGATATTACCTCTCATGAA TTAAAAGAAAAGGAAATCGTGAGTCCGTGGTATCATATTTTCCCTATACCTGTATACCGCAAAGAATGTG TATATAACTGTTTGTGAAGTTAAGCAAAATAAATAAATAAAATGCCAAGTTTTCCCGTTTTTCATATCGA ATATGTTTGATGGATAATATTTCAAACGCATACGCACTCTATGGGGAAACTTATAACTGAAGGGGACTTG ACATTATCTATAAAACAATATGTTTCTTAAAAAAACATAAAACTTAAAACAAATAGAACTTAATTTAATT ACTCTTCTTATTAAAGCGAAGAATAAATCTAATTCTTTATCTCTCCCCATCCCCTCCCCCCTCATTTTCC CAGAGTGACGGGATTTAAGAATGATGAATCCCTTCTTAATTCATAACTAAACCGACATAATCGAATTTAG TGATTTAAGCAGGGGTATTACGCACCGGGCAAATATTATTGATCATGTTGATTGATTTCAGAAGGTATTT ATTTGTTTAAAAAGTGAAGTTCAATGTATTTATGTTGCATTCTTACCTCTTAAAAAGATTTAATATGTTG CAAATCTATGAAAATGTATTTTCTGTAAATCTGATGCGAATCTTGTACATAATAGTATGTAAAGAATCTT GCAAATGTTGCAAAATGTCTCTGTAATACGCCGTCAAATAATTTGGATGTGTTTGCTGAGTAGTCAGATG AGAATTGGCGTCTAAAACCGATTATGTTCTTTTCCATTTTTTTCTTTCTTTCAGGGGGTCTTAATATATT TCTCTATATGTTTTACAATTACGTTAGCCTCTTCAATTATGTGTGTTGTCATCAATATGTATGTCTTTGT AATATCCAATATATTTCGTGTAACCAGCAGAGAAGGTAATAATGTATTTGAAAGAATAATGTCAGACATG AGATTGGGGAGGGGTATTTTGTAGTAGGCCTGGATTTCAAAGTAACAGTGATTGAAATTCGGGGAAATGA CTTAATTTAAAGTTTTGATAAAGACTTGAGGATATTACATACATTCAATTATTTATTTTGAGAATATTAC AAACAAATATCATTAACAGATCCTATAGGTTCAGGCAGCCTAGGCAATAAGAACATTATGGGTTACCGTC ATTGGATACCAACAAAGTAGATAAATAACAGAATAAGTTGGTGAATAAAAGAAAATAAAGAAATGAAATA AACATTAAGGATTCTTTGAAGTCTCAGGTTCTTATGGATTCTGGTATCATGAAAATTAATATGTGACAGG GAATAAACTGCCGTTTGGCTGGAAAAAACAAGACGTTTTCATTGACTAACATTGGGAATTTACACCGTAG AGAAGACAACCAATATCTAATAAATGAATGCAAAAACTCTATCAACAGGAACAAATGTAAGTTTGCTCAT CTAAGAATAAATCAATCTTCATATTGACCACCACTCTTGTAATCTATCTATATATATGACGACGAATATC ACTATGCTGATGACCACCACTTTGGACATGTTGGACACTTACGCAGAAGACGACATCTTGATTGACCACG CAGCTCTTGACACTATCACGCCGAAGAAAAACAATTATTCAATTATTGACTACTAGTTTTGGTATTTACA ACCAATAACACAACTGTTCATTCATGTCAATTGACTATCAGTTCTTACATTTTCACCCAAGGGCACAACT GTTTACTGAACTATCAATTCTGACATTTACGTTTAAGAACGCAACTTTTCGATTGACAATCAGTTCTGAC TTTACGCCAAAGTACACAAATACTCAGTTGACTACATCCATGACACCTCTGACATTTTTCGCCCAGTAAC ACAACTTTTCAATTGACAACCAGTTCTGACTCTTACGCACAGGGACACAAGTATTCAAATGACTATCAGT TCTGACATTTTCGCCAAACAATACGTCTGTTATGCTTATTGACTATCACTTCTGACAATTACGCAAAGGA ACTGTCCATACGGATATTTATGGCCAAGAACACAACTATTTCATTTACTATCAGTTCTGACACTTATGTT TAGGAACACAGCTATTCGAGTGATAATGAGTTCTGACATTTACGCCCAAGAACACGACTACTGAATTGAT TATCATTTGTAACATGTACGACCAAGTACACAGTTTCGATGTTCACGCATAAAAATACAACTATTGGCTA CCAGTTATGACATTTACCAATGTATACGCACAATGACACAACTATTGAATATGACTATTATTGCTAACAC AGCTTTTTCGATTGAATACCAGTTTTGACATGTTTGCCCAAGAACACAGCTCTGACATTTACTCACAAGG AAACAACTATTCGATAGACTATCAGTTCTACCAATTACGCTAAAGAACGCACCTATTCCATTAAGTATCA GCTCTAAAATTTGAGCCCAAGAATACAAATATTCCATTGACTATAATTTCTTACATTTACGCCCAAGAAC ATAGCTAATTAAATGATTATTAGTTCTGATATTACGCTTAGGAACACAACTCCGCGATTGACAATCAGTT CTGACATTTACGCCCAAGAACACAATTGACTATCAGTTCTGACATTTACGCCCCAAAACACAAATGACTA TCAGTTCTGACATTTACGCCCCAAAACACAAATGACTATCAGTTCTGACAGTTACGCCCAAGAACACAAT TGACTATCAGTTTTGACATTTACGCCCCAAAACACAAATGACTATCAGTTCTGACAGTTACGCCCAAGAA CACAATTGACTATCAGTTTTGACATGTACGCCCAAGAACACAATTGACTATCCGTTCTGACATTTATGCC CAAGAACACAACAATCAGTTCTGACATTTACGCCCAAGAACACAACTGACTATCAGTTTTGACATTTACG CCCAAGAACACAATTGACTATCCGTTCTGACATTTACGCCCGAGAAGACAACTGACTATCAGTTCTGACG TTTACGCCCAAGAACACAATTGACTATCAGTTTTGACATGTACGCCCAAGAACACAATTGACTATTAGAT TTGACATTTATGCCCAAGAACGCAAATGACTATGAGCTCTGACATTTACAAAAAAGAAAAACAATTATTC AATTGACAAACGGTCCATCCATTTACGCCCAAGATTAGACGAATATCAGTTTGGACCTTTGTCCCAGAGA CGAATACTCTCTTGGTCATTGCTTTGGACATGGCATCAAATAAATTCATGAATGCTGAAGAAGTCATTTG CCAAATTGACTACCACTGTTAACATTAGAATATTGACTGCAAAGTAGAGGATACTCAACTCACGTATACG TGCAAAGTAGAGAATACTCAACTCACGTATACGTGATTTGGCGTGAAGTTATTAAGTTGATAGTATACTA TCAAGTTTGCAACTTCACGCCAAATAATTTGGATTTTACGCCGAAGAAAACGAATTATGGTTGTGGTTTA ATTTTCAGTTACGATTAATGCTTGATCGACCGATCGATTATCATTAATGTTTAATTCCAATCGATTCAAA ATCGACAAAACCTTTTACATTATCACCAATATCCATGACTCGTGAGTAATTCCGCCAAAGAAGGCGTGTT ACCGATCCGGACAGTTACGCTCAGCAAAAAAAAGTACCAATGTGATGACCACAATCATCTTAACATCTAG GCCGAAAAGGACTACTATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds