Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_011664222.2 PREDICTED: Strongylocentrotus purpuratus rab-like protein 6 (LOC575861), transcript variant X3, mRNA TAGTCCCCCAAAATCAGCTGTCGCGCGCGCCGTACCGGTAGTCTCACAGTCAAACGTTACACCAATTTGC ACCTTACAATCCAGTCTTTTTAGGGTTATTGCTTCATCGGAATATCATGAAGTATTAAATGTACGTGCAT TCCTAGCCTGCATCATGCCTGATTCTACCTGAAATACATTAATTGTAAATTTATCAACAAGTTAACCGTA CTATCAGGATTCAGGGAGCAGTCAGGAGCAGCCAGCAGACTTCGACTGCAGCTTAGCCAAGGCTAGAGAC TGAGTTCTGTTCGTCGACGTTGTCATCAGTGCAGCGCATCTAGCTAGGCCTACTACATATACAGTAGCAC TGCACTGTAGGAGTATGTAGCTTGCATGTATTGCACGTCTATGAATCATCTGCACTATACTATACTTGAC AGTTGACACATCACAACATTGCACAGCTGATTGGGATACCACGACAAGGAGCTGATCCAATCTAGTTGCG TGTTGAATTCTTGGTGTCATTCATTGATGTGCCGATCAGAGCGCAATCAGGATGTTTTCGGCATTGAAGA AGCTGGTTACCAATGAACAAGGGGACACCAGACCCAACATCCCCTCGGGGATGCAGGCCATGGGGGTCAG TCTACAGCGCAAGTTTGCCAGAGGAGTACAATACAACATGAGAGTGATCATAAAAGGGGACAGGAACACA GGGAAGACAACACTCTTTCATCGGCTACAGGGAGGCAAGTTCTCAGAAAGTTATCTTCCAACAGCAGAGA TTCAAGTAGCCAGTATACAGTGGAACTACAAAGCTACCGATGATGTCGTCAAAGTGGAAGTCTGGGATGT GGTTGACAAGGGGAAGCCCCGGAAACGAGAGAGAAACACCCTGAAGATAGACAACAAAGAGACCGATGAA GATGACCCAGACAACCCCTGCCTGGACGCGTCGTTCCTTGATGTCTACAAGGGAACTAATGGTGTGGTGA TGATGCTGGACATCTCTAAGAAATGGACATGGCAATACGTTGAGAAAGAGCTTCCCAAGGTTCCTACACA TATACCGGTATTAGTCATGGCCAGCTTCAAAGACCTGCATGAAGAGCAGGCAGTCTACAGAGAAGAAATT GAGTACTTCATCAAAGAACTAGACAGACCTCCAGGTTCAGCCCACATTCGAGTAGCGGAATCTTCCATGA AAAACGGTTTTGGCCTAAAATATCTGCATTCTTTCTTCAACATCCCGTTCTTACAGTTACAGAGGGAAAC ACTACTACAACAGCTGCAGAGGAATCAGTTAGAAACTGATGCGACGCTAGAAGAACTAGATGCAAGAATA GAGTCAGAAGATCAGGATTATGATATGTATTTGTCAAGTCTTTCCCACAAGCAAACGGATAAGTCTAAAG GTTCTTCATCGTCTCTCAACGTACCCAATGGCCAGACACCGAGGAGAGCTTCAGATACAAGCAGTAATCG AAGCTCATCTGCATCTGCTACTCCTGCCAAAGTAAGCCCTGCCCACTCACCAAGCCAGCTCACCCCTAGC TCAACTCCGCCCACAACCAGGCATATACAGCAGCTACAGCCAATCAAACAGCAGCAGCAGCAGCAGGCCC CTCCCCCAAGGCCTGCTCCCTCCCCCGTCGTCACCCAGGAGGGGGAGGAGGATCAGACTACGCTAGGCAA CAGGTTCAGCAAGTGGTTTGCTCCGAGCGAGTCCAAGGTCCAACAAGGAACAAGAGTGGAGGATGAGAAA TCAGCAGTCATTGAAACTCCGGCTGAGATCCACCATTCCCGTCAGCAGAAGCAGGCCCAGGGCAAGATCA GCAACGTCGATGAGTTCATTCCTGACGATGGTATCGACAAGGGATTCTTCGATGAGACGGACTCCAGACC CGCAGCAGAGGCGCCAAAGAAGAGCAGTGTATTCAGCTTTGGAAGGAAAGCAAAGCCTAAACCCAAACCA GAGCCCCCGGCTCCGGCACCGGTCGTAGCTCAAGCTCCAAATCCGGACTCAGACAGTGATGATGGAATGA ATCCAATGGTTGCTGGATTCCAAGAGGAGCTGGACTCCGAAGACGAGGTGGTAGGAGGGGAAGTCCAGGC AGTTACCCTCGTGACCCCCGACACCGAGGGACCCGATTCACCATTCGATACATTCTCAAGGATGCCTCCC AGGCTTGCAAGTATGGACATGTCCAGCGACGAATCCGCTGATGATAGGCCAGTCGTCGCAATGGATGGAG TCGATGACGATTCGGATGACGACGCAACGACGTCAACGCGGTCAAAGCTATCGAGTGGGAACATGGGGTG GAGCTTCGAAAAGAAACTGCCGTCGACGAAAGAGTCGAGCAGGAATTCAGCGACCTCTAGCACGCCGTCC AAACCGAATGTTGAAACGAAAAGACAACCAAAGGTCTCCACATCATCGTCCTCATCGTTACCAGACACCC AAGAGGTGATGTCCTCAAGAACACAAGGGGCTTCAAAGACACAGGGGGCTTCAGGATCTCAGGTGACTTC CAACCAGGACATTGTCTCTTCAGAAGAAGACGAAGGGGAAGGGATCAAGGTTTTACAGGATTGTGAGGAC ATTTCAGAGGACGAAGCAGTGGTACCAACTACCCCAAGTCAAGAAGTATCGTCACCAACAACTCTTGGTC TGACGTTACAATTAGAAGACCTCAATTTCCTAGAGAGTGTAACTTCAAAACCTGCCAAACAAACAGTCTC AAGGAACCTATCACGAGCCAGTGATGAGTTTGATGTCCTTGTCTCCGTGGTCCAGGATGAAGACATCAGT GATTGTGAGACCAACACCAGTACTAGCACCAGCAGCTCAGCCAAGAAGAAGAAGAAACACAGGAGCAAAG ACAAGGAAGAGGATGATGAGGAGAGGATACACAAGAAACACAAGCACAAGAAGCATAAAGAAAAGGACAG AGAGGACCGACACTCCAGGAGAGACTCCAACCAAGACGGCGGCGAAGAAACACGCAAGAAGAAGAAGAAG AGCAGCTCCACGTCCGGCTCCAAGAAAAAGTCCTCCTCAGGAGAAAAGCGAGAGAAGAAGCGGGATGGAG CCTCTGGAGGAGGTGGTGGAGCAGGATCCACAGGAGGAGGAGGAGGGGGAGGAGATGCGATGGATGATGA TGCAGCTTTGGAGGCATTTCTGGAAGGTATGGATGCTCCTACGTCCAGTGGTGGAAAATATGAAGCAATA TAACATTGTGGGGCTTATTATGTATTCAAAAATAGCTTGTGATCGCATTATCTTGAGAACCGATAGACAG ATTACAATCAATCTCAAGACATGTTTATGTATCTTGCAGAGCCAATGAACTGATTAGATTTTAGGGTCAT GTCATCGAGAGAGAGAAACGAGAGAAGAAACAGGATGGAGCCTTTGGAGGAGGTGGAACAGAATCCACAT ACATACCATGTTAAAATACCTTCACCTAACCCGAAAAACATAACATTTTTGTTGTTCTTGTGGGAGGTGA CTCCATAGCAAGCTTGTTTTAGGTTTCTCATACCATAATGATTATTATAATCCTGTAAATTTCCAAATTG AAGTGATTTTAAATGATTGTTATAGATATTATAAAACTGTTTGATATCATAAAATGACCACAAGCCATTG AGCTCTGTGTTAAAGGCCTCCTCAAGAATAATAATGTAAAGCCATGTGTGTGCTATCTTCTGTTAACAGT GAAGTTGCAGTGTAGTATTCCACCAGTGAAGAAATCTTATATTAACACCAATCTTTGATGTTTTCTCTTC CCTTGTTTAATTTTTTTTTGTCTCA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds