Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_003725033.3 PREDICTED: Strongylocentrotus purpuratus serine/threonine-protein kinase A-Raf (LOC575613), transcript variant X1, mRNA CCCTTCAGAAAGATGGCGACCAGCAGCAGTGAATTCCCTGCTTCTTATTCGGCTGGGCAATTTGCGAGTG AAAGTCCCAGCTGTGACAATGGCCACTCGGATTATTTCAACATGGGGGACAGAACGAAAACAGAGCAGTT AAATGTCATCCATATGCATATGGAGTTGAAAAAGAAGAATATTGAGGAATTGATGGAAAGATTTGGAACC GAGCAGCCACCACCTCCAATATTTCTTGAGGAATACCAAGACCTGACGGATCAACTGAGTGAGTTACAGG TTGAAGAACAGAGGATTAACAATGAGATGAGTAATGGGCACACCTCACCGAACCTTCAGACCACACCCCC TCCAGAACCAGCAGATCTCCACGTACCCTACCATAACAAACAGAGCCTAGCTCCACCCCACAAGAGGGAA TTCACAAATCAGCAACATCCAAAGTCACCGCTTAGCCAGTCAGTTAGGGCTTTCTTGCCAAATCAGCAGA GAACATCGGTACTAGCCAAGTCTGGAACCACCCTCAAATATTGTCTCTCGAAAGCCATGAAGATGAGGGA GTTAACACCAGAGATGTGCATAGTGTATCGAGTCAACCCCAGGATGGCTCTGAGCTGGGATACGGATATG ATGTACCTGGCAGGAGAAGAAATATCTGTAGAACTGAAAGCCCAAAATTTCCCAGCACCAAGTAGCATAT CACATAATTTTGTCAGAAAAACCTTCTTCGCAATAGCCTTTTGTGACAGCTGTCAGAAGCTGCTATTCCA CGGCTTCCGATGTCAAACATGCAGCTACAAATTCCATCAGCGATGTGCTAACAAAGTGCCCACGATATGC ATATCCACAACAGGAGATAATCTTTACAAGCTATTATTGGCATTGCGGAAAGAAGATGACTACAATGATT ATCCCGATACCTTCCCCGATGAGCCTGAATCGCCATCATCGGACGACCAAGATTTCCCAAGGAATACGTT ACCACGGGAACGCTCGACATCCGCACCGAACATCTGTCAAAATGCAGTTAACGTACCTGGTCAACAGTTT GATAGTGAAGCTTTTTCAAGATTTGCTTTTCCAGTGAAAAGCTCTCTAAATCCAAATGGACACACTGCTA GCGCCGCTGTTAACATCCATGGGGCTCACGGCGGTGGACATGGCAAAGTGCTAACCCCGAACAGTGCCGT TCAGGATGGCGTCTTTGACTATGACCCCACTAACATCGCCAATGGCTTAGCGTCTAGTTTACCGAACACT AGGAACTTGATACACAGTCCAAAAAGAGAGTCTGGATCGCACAGTTCCCAACCCTCCCCCACCCATCAGC CTAGGTGGAAGGACGTCCTTCCTGGCTCTGACTCTAAGGATAACAAGATCAAACCTCCCACCACATTGCT AGGTCATAGGAGGACAAGAAGAGATTCCAATGACGACTGGGAGATACCAACTGAAGAGATTAGGTTAGGA TCAAGGATAGGAGCAGGATCTTTTGGAACTGTGTTCAGTGGACAATGGCATGGTTCTGTAGCAGTGAAGA GGTTGAATGTTAAGGATCCAACTCCATCACAACTACAAGCATTCAAGAATGAGGTCGCTGTACTTAGGAA AACGAGGCACGCCAACATCCTGCTTTTCATGGGGTGCACCTCCAAGCCCCAGCTAGCAATCGTGACACAG TGGTGTGAAGGCTCGTCACTCTATAAACATCTCCATGTTCTAGATACTAAATTAGTCATGCATCAACTTA TTGACATATCAAGACAGACGGCACAGGGTATGGACTACCTCCATGCAAAGAACATCATCCATCGAGACCT GAAATCAAACAATATCTTCCTGCACGATGACCTCACAGTGAAGATAGGAGACTTTGGGCTAGCTACGGTC AAATCAAGGTGGAGTGGTTCACAGCAGTTTGAGCAGCCTTCAGGTTCAATACTCTGGATGGCGCCTGAAG TGATTAGGATGAGGGATACTAACCCATACTCATTCCAGTCTGATGTCTATGCATTTGGAGTGGTTCTCTT TGAGTTGGTCACGCAATCTTTGCCATATCAGAACATCAAACACAAAGATCAGATCATCTGGATGGTTGGG CGTGGTTACTTACAGCCGGACCTGAGCAAGGTTCGGAACGACACGCCCAAGGCACTCAAGAGACTTATCA CAGACTGCTATGCGCTCAATAGAGATGAGAGACCCTTGTTCCCTGTGGTTTTGGCAGCGTTGGAGAGCTT GGCCAGGCAGCTACCGAAGATCCACCGCAGTGCATCGGAACCTTCGTCGCTAAATCGGGCAAGGTTACAT TCAGACGATTTCATGTACTGCCCTTCCCCCAAGACCCCCATTCAAAGCCAATTTGCTGTCTTCCCATTTG ACATGCGTGGATGATGACAGTTTATGCTGTGAACAAACAAAGCGAAGCGACTTGGCTTCTCACTTTTCAA TTAAATGGACAATCGACTATCTATACCCCAAACTGTGGAAATGGGTATAATGTGATGAATTGTATGACAT TTGAACATGAAGACGGAACATATCTTGAAATCTAGTGTCAGATAGTGGTAGAAATAAAAGCCTGGAAAGG ATGATGAATCAGCATTCTTCAGGAGCTAATGTCAACTACCACAGAAATCTACCTAACAGAGGAACTTAGC TATCATGATGGAGAATATGAAATGAAATCTGTGGAATATTGAAAGAACTCTGCTTCATCATGCAACATAA TTATATGAAATTTGACAAATCAAGTTAAGATGATGCACATCATAGATGAAACACTATGCGAGTCATCTTC TGGAAGACATTGTGTAAGAGATTTAAGAGATTTTTTTGAAATAATGGTGCATGGATCCTAAAGTGAAAAT GGAATTTGAAGACTACAGCAAATGCCTTATGACCGACACAATAGGCAATCTGCAACCCGGCAAGATGAAG AGAAGGAGACAGATCTGTTTCTGTATGACGGAACACTGCAATCATCCAACCTGAGAGGACGCAAGTGTTA GGATATGCTGTGACAGGAAAGAAATCATCGAAATGCGGCACATCTGTAGATTTTTATCATGAAATTATCA ATACTCAAGTCTTAGAGAAAAATACACACACACACCCTACGCATTTTATTGAATCCAAACGTTTCATGTA GATCATATATACAAAATACTGAACATGTATGTATGTATGTATGTAGATTAGTAAGGTCAAGGCTCACTAA TACAGAAGATGCTAAGTTTTGAGGTTTATTGTATATTGTTGAATTCAAAAGTTAAACTTTAAAAAATAGT GAATGCAGGGGAAAGTGGATTGTTATAGTTTATGAATTGTAAAAACCTTCAAGTTGTATTGAACAGGCAC CCATGACTCATTGCTTCATACGTGATTGCACATTAAATATACATCTGTCAATTCTTAGGTGTTAAGGGAC ATCCATTTCTTTCATGATTTGTTTGAAAGTCTACTCTCCTTTGGCACATGTTTTTATATATCTCATCAGG AAAGAGAGGAATTATGTGTCCTCTTAGCAATGCAAAATTCATATTCAGTCACTGTGTGAGATGGTCCACA AATATGTAAGCATTTGAAAATTAATTATGAGCCCATGATCATGATTAGATCACTGTCATTGCTGAACTTT TCTTTTATATACCCACCACCCTACATGTGCTTGCTTATGCATACAACTGACATTTATCAAACACAGATTT TACATCTGTCTATATATGATGATGATGAATCTAATAAACACATCTCTTTGCCTGATCTGAACACACTGCT TTTTAGAAGCAACCTATCTGCAGTATACTGCACCAAATCTGAACTCACAAAGAGACAAAACTATATTTTC TGTATTGGATTTATGTATTCTTCAACATAATTAATGATTATAAATCCTTGGACACTGTTTTTCATTCTGA ATTAAATTGACATCTAGAATAGAGTTAGGGTTATCATTTTTTAAATTTTATTTCGAAGTCCATTTTTTAG ACTCCGTTGATAGCTGATGCGCCCATATACCATATTACAGCATGAGTCAGACTTTGACCTTTTTACACTA CTACGATCTCTTTGTCATCGCAAGTTGCACTTTATTTTTGTATTATTAACTCCAACATCATTTATACATT CATACTTCTGCATACTACTTAGTGAGTCTGAGTGTTATATTTAATTTGGTTTTATCTGCTTCTGATTCAA TTTGAAAGTTGTGCTAACCTGACATTTTCATCAACATGGCTCAAAGTCAATCCCACAATATTAGCTCCAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds