Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>GAUR01084573.1 TSA: Lytechinus variegatus AMR9006.40092.1.5 transcribed RNA sequence CGGAAAACGAACGAAGATGATCGCCACACGAGGATTGAAAACACCGTCTTTTGGTGTTGGTGAAAGAGTG CTGTGTTTTGAACCCGATCCTACAAAAGTACGAGTGCTATATGATTCAAAGATACTGAAAGTAGATTGGA CAAGAGATAGTACAGGCAAGAGAGTTCCAGAGTACCTAGTTCATTTCAATGGCTGGAATCATAGTTGGGA CAGGTGGGCCCCTGAACACTTCATTCTCAAGTACACAGATGAAAGCTTGGAACATCAAGAGAAGCTCCAG AAAGAAGCAGAAGAGAAAATGAGAAAGAAGAGGAGGAAGAGAACCTGGTCAGAGATTCTTCAAGAAGCTA GAGAGAAGCGAGAGAAGATGGCAAAGGAAAACAGTGCAAGTTCTGCAGAAGATAGTAGTGTTGGTTCAAG TGACAGTGAAGATGAAGACGACGATGAAGCAGTGGAAGTTCCAATCACATTTCCCGAAGCCTTACATGCA AAGCTAGAAGATGACTGTTACTTCATCACATCCAAAAAGCAGCTGGTGAAGCTCCCACCAGAACACACAG CCCTGTCACTGATGGAGACATATGTTAAGGATTTTGCTTACCGGTGTCAGGCTCACAACGTCAGGGTTCA CCTGAGGCAACAAGGTACTGCTGGGATGCCTGTATCTCTCACCACCCCAAATAGCAACAATGGAGATTCT GTTGTGCCACCTCCTCTTCCACAGTTCAACGTTGACCTATGCAGAGAAGTGATGGATGGTATTCGTATAC TCTTTGACTTTCTCTTGCCAACTAATCTTCTCTATGATTGTGAGAGGACTCAGTACAACAGCCGCTACGC ACAGCGCCCTCTTGATACCAATGGAGTAAAGGATGACACTGCAAAGATTAAGCCGTGTACCAATGGCAAT GTAAGGGCTACAAGACGATGGAGTATGTCGCCCTCTAAAGAGGTCTTACCACCAGTCTTAGAACCTCAGA CAGCTGAATCTCCACCGGTCCTCAAACCTGAGGCTGTAGTAGATGGGAAGAAGGAGAAGCAGGAGCCGGC TCCTGCAAGAAGGATCACAAGAAGGTCATCAAGCAGTAGCTTTAACCAGTCATCACCACCTCCACCACCG CCTCCAACCGTATCATCAACGAGGGAACTTAGATCATCAGACAGCCAAAGACGTAGGAGTGCTGACATCA AGATTTCTTCATCTTCAGCCAACTCAGCCGTGACCTTGACTCACACCAAACGAGATGAGGGTGATGCCAC TACTACCACCACCACCACCAAAGAACTCACCAACCACCATCCTCCATCTCGTAGCCTGCGTCATTCCTCC AGGCTGGCATCCTCCTCCTCCATCACGCCCTCTCCCCCAGTCATCACTAACATGGACTCCATCCCTTCCT TGGAAGCCTCATCTTCTACCCCTGCACCACAGACACCGCAGGTCCTCAGCAACGGTGAAAACAAAGACAC CATGAAGTTGAGGGGTAGCAGGGGGTCCTTGTCAACGGCCGATGTTGGGAAGATTCCGCAGACGGCGGAG CTTAGCATCAAGGAGGAAGAAAATGATGATGGAGTGTTTAGTATAGAGAAGAATTGTTGGAAGCTTCTGC CCGACGGTGCCCACTATAACGGAGCAGAACCGCCATGCAGGGTCTATGGTGCTCAACATCTATTGAGACT CTTTGTTAAACTACCGGAAATTCTTGGACGTATGGATCTACCGGCCAAGAAACTCAAGCCTCTGGTCAAG CACTTAGAGATGTTTCTTAGGTGGTTATCAGCTACAGAGCAGCTTTTGGAATACTTCCCAGACAAGGCTT ACGTCAGTGAAGCACACGCTCTCAGGGACAGAGGAGATATGAAGACAAAGAGAACAGTGGCTGTAAAATG AAGTTATTTTATCAAGATGTACACCTGTGGGTATTGCATAAACATGCTGTTATTGTTTTTCATGGAAATC AGCAAATTAATAATTGATTTTAGTTGGTGATAGTAGTTGGAAATTGAATATACCAAATAGAGTCAGTTGC TAATCCAGATAAATAGCTGCGAAATTAAGAATGTTGTTGAAGATTTGGGAGTTTGGATGCTGAAAATTTA AATTTTGCGTCTGTGTTGGTGCTTAGTTGGAAGCGCTGCCTTATCTAGCTCCAAAATCTACATGCAAGAA GTGGTCAAAAATTGCATTATATGCAGCTCAGCACTTCGTGAGATTCATCAAGGAATCAGCTTCGTTCTGA GTTTGGTGTTATGCTGACAATAAAAATTGACCTAACACCAAAACTAATAGCTCATCTCCAAACCTGAAAT CCCCCAATGCTGTTACATGTATCGTACCTGCCAACTCTGGGGGAAAAAGAAAAGTGCCATTTTAACCCGT TTTGTTTCTATTTCTGTGAATTTTTTCTGTATCATTGAATATTGAATTTAATAATTCCTGATTTTTTTTT CTATGCCTTGGTTATCAGGGTTGGCAGGTATTTATTTTTCATGATGTAAAGGAAATATTCTCTGAGCCAA GAGATTACTATCGAAGAGATTAAAGGCTACAAAGACAAATGTTGAACTTGTACTTAGTCAGGAATTATGA TAATAATATTTATATTGGCTACTTATGTAGCGCACAGGCCCGTCTTTGAGTGCTCATGGCGCTTCATGTA CTATTCTACGAAAATCAAAATCTAAATGTTGAAAGAAAAGGCATGGAGGAATGCTTTGAGAAGAATATTC TCTGACATGCTAGATCATGGTTTACTTGTAGAGATTAAAAGTCACAAACTGAAAGGAACCAGTTTAAATG AAGATGTAGCATTCTATGGAAGTGTTAATCAAAAGTAGACCCACTTAATAAATATTGATTGCAATGATAC AGTAAAATCTACTATAAAAGTGAAGATGTATGTTTTGTTTGATTGATGATAACAATGTGGGGGATGGGAT TATAGAGTAACTGGTTTCAATGGCAATCAAGGTTGAAACCATTCTAAGACTTAATAATTGATTACAATTT ATTGTCAGAGAAAACTTTATGGCTGAAAGTTGTTGGAGAAATGACCAGTAGGTGTAGCATTTTGCTGGCT TTTGTACCTTTCATCATTACATTGTGCTTCATCTACAAGAAAGGGTATGGCCTTGATGGTATATAAACTT TCATGTCCTTATTTGATTGCTCTTGGTTTATATCACAAGGTTCTGTCATAAAAAAAGTCCCATGTAATTA TATACATGTATATTACAAAAGTTAAAATCAATTTTGCATATGGAAGTCATTTACTTTTATGATGACAGTT TTTGTAGGACAATGTCTGTTGCTTGCTGACAAAGCATGTAATATGTCCTGAAAAGTCAGCAGGTCATGGC AGAGGCAGCGGATCATCAGGCTAGGACAAAGAATGTGGAGGGGCACCTTTTGTCTGCCCAACAATAGGTG CCCCCCCCCCCACTTTTCAATATATGAGCCTGACGTTCTGCCACCTCTGCTATCAGATTTCATGCAATTA GGAGCAGGGATTGAATCATGGTCCGCCTTGTCCTAGGCCTCTCACCTTGATTTAATATTTTGGGGAGAGC GTAACAACGCCTGACTTGAAAATTACCTCGGGTTTATCCATCCAGACTACAGCTTTTGAAAATTCAAAGA CGTGAATAACACAGGGTTTATCTATTAAGACAACACCTTATGAACATTGATGAACATGAATAGCAAAGTT ATATAAAGTTCAAAATAACATACCGGTAGGGTTTATCCGTCAAGTATCCACCTTATAAATATTCATAGAC ATGAATAGCAAGACCACCTTTATATCAATATTCATAAACATTTATGGCAAGGCTATAATCTATTATTACT GAATACAAGGCATTTTAGCAACTTAATAAAAGTCATATTTTGCATGTTACTTTCAATCCGAGACCAAAGC AGTAAACATTTGCCATGGTGCCCTCTTCCTGGTTTTGCCCATTGGAATACTGTACAAAAGTTGAGGGCAG CATTTGCCACATGCAAGAGCACTTGCACAGTAGTAGCCGATTTTGATCGCTAATTTCAGTATTTGCGAAA TCTGGTTGGAACCAAGTTGTGAACCAACGCATTGTAGATAAAGCACGTAGCAGCCAGTGCATACGCATTT CCAGCTGATCAAACCCAAGTGCAAGATTTTTATTCGTTAAGTATATGTGCGTGTCATGCATGATGCGCGA CTTTGCGGATATGATTTACGTCACAATTGCTTGGCAAGGATCCCTTCGCCAACTTAATGAATAACAGGAC ATCAAAAGTTGTATTAAACAAACAGGCATATAAATTGTTCCAAATGATAGTTTGAATAACATATTACAAA GCCGTAAGTAATAACAATATCGACTGGCTCTTCTTTCTGGTAACATCACATATATCACCGTTATACCTGG GGGGTGTTTCACAAAGTTTGAAGTATGACTCAAGTCGCACTAAAATGCAGATGTTTTCTTGATATGCAAC GCGTGATCTTATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds