Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT114483.1 TSA: Strongylocentrotus purpuratus WHL22.73012.1 mRNA sequence GCTACCGGTCATGCACGATAAAGCCTTCTTGATTGCTTATTTACCTGACGAAATTGACGAGTTAAATGGC TGAAGTAGCCAAGTCCACACCCCACCCCTCTACAGGAGGGGGGAAGAAGATCAAGGAGGGTGTAGCGAGC CAAGATGGAGGTGATGCAGGGGGAGAAGGAGGCGAGAAGAAGCTGTCTAAGAAGGAAAGAAAGATGCTGA AACAGAAGCAGCTTGCTGAGCAGCAGAAGGAGAAAGAATCAGCTCAGGTCCAAGCTCCACCAAAAAGCAA GGCAGAAATGAAAGCAGAGAGGAGGGCAAGACAGGAGACAGAGAGAGCCGCCAAACTGGCCAAGAAGTCT GGAGAACCTATCCCTCCAGGAGTGGGAGCAGCAGGAGCAGGAGCTGGAGCGGGAGGCGGAGGGGGGAGTA GTTCACTTCCTAGTAGTGGATCCAGTGGTCAGCTACAAAGTAAAGCTAGTAAACAGACAGGAGAAACTTA TCTCAAGAAAGATATTTACAGAGTCTCGGATGATATCAAACTAGATGACCCTACTGTGCAGAAACGAAGA GCAAAGAAACTTGAACGGCAACAGGTACCACAGAGGGCCGAGAGTCAGAAGAAAGTGGGTCTCTTCTCTC ATCTGAACCAGTTTGAGCGACAGGTCTCGCTGACGAGCCGTCTTGGCTTTGGCTCTGGTGGGATCCATCC GGCTGTTATCAAGCTAGGTCTGCAGTACGCTGAGGGTATCATATCAGGAGCTAACTCCAGGTGTGTAGCC TTGCTGGTAGCCTTCAAGCAGGTTATAGCTGATTATAACACACCACCTCAGAAAGACTTGTCCCGAGATC TAGATTACAAGATCAAACCGTACATCAATTTCCTCAACCAGTGTCGCCCCAAGTCAGTCAGCATGGGCAA TGCTATCAAGTATCTTAAGATGCAGATCAACAATATCCCTCAAGGCATGCCAGACAAGGAGGCGAAACAG AGGTTGTGTGACTGCATAGACAGTTACGTGAGAGAAAAGATATTCTTAGCCCAGGAAGCCATTTCCAAGA CGTTTGCTTGCAAAAAGATCAGAGATGGTGATGTCATCCTTATATACAGTTGCTCATCTTTAATCAGGAA AGTCCTGTGTGATGCTCATAAATCTGGTATCAGCTTCCGGGTCATCATGGTGGATAGCAGGCCGAAGGTT GAAGGTCGTGAGGGCATTAGAAGGCTTGTAGCTGCTGGGATCAAGTGTAGCTATATCCTCATCAATGCAG TCTCCTATATGATGCCTGAGGTATCTAAAGTTTTCCTTGGTGCACATGCCCTCCTTGCCAATGGCTATGT CATGTCAAGGGTCGGGTCATCGGTCATCGCCATGGTAGCAAAATCCTACAATGTTCCAGTTCTCGTCTGC TGTGAGACATACAAATTTAGTGACAGGGTACAGACTGATAGCTTTGTAACAAATGAACTCGGTGACCCTG GTGACCTAGTCTCTATCAACCGCTCAAAGTGCAACCTGGCCGACTGGAGAGACATCAATGCCTTGACACT TCTCAACCTTGTATATGACGTCACCCCGCCAGATTTTGTTTCCATGGTGATCACCGAGATAGGAATGTTA CCGTGCACGTCCGTGCCTGTTGTACTTAGGGTCAAGAACATAGAGAGCTGAGGTCAGCCTGAGTAGTCGG ATATGAACTCTCATCAGTATGTGCTCTATGATGCTGTATCTATTAACCCATATGGATACAGTTTGAAAAT GGGTATAACACACATTTTCCATAGACTCCAGCACTATCCATCTCAGGATTGGTATCCGATGGGTTAAAGG GAGTGTAGCATGGCAAATATCTACGTCTTCTTTTAGACAACTGCACATAAACGAATGGACTTGATTAACG GTAGTCAGCGACTTAATCTCTGCATGGTCAGCACGCGCGAAAGAGACTGAAGTTCTCCTCACGATTCGGT TTTGCATATGTTGCACGCACGTGAATGCTGCGGTCGGTTCGTCCGTAGTCATATTATACCCAATTGCCCC CGTTTATAGCCATGCTACACTCCCTTTAAAGGCTATATTTACATGTACAGCTTGGCTTGGATTAAGGATA GCTCAGAGGAATTATAATACTCTGCAAGGAATGGAGATGGTGCTCAGTCATGCCATTTGCAGATGTGATA AGGATATGGCATGGGGACTGTTATTTGTGACAACAATAAATTGGAAAAAGTGTATAAGAAGAAAATTCTA TCTGTATTTCTTTTATTCAAAATATTAACTATAGATGGTCTATATTCATTCATCAGTTTAGTTTTGCATG ATGTGATCTCTTCTAGACTCTGTCTCTTATTAATATCTAATCACATGTTACAATCTACATTTTTTCCCTT TCTTTTGGAGGGAAAGGGTGTTGAGCAAGGGTTATGTTCTAATCCTTATATTTGTGATGGAAACTTTGGA ATCTTATTAACCCATTGCCTCCAGGAATCAGATGATATCTGTATAAAGCTTATGGAAACTGTATAAAAGA ATTAAGTTTTCAATAATCAATTACCAGGAAGTATTTCTCTTATAACTTCTGCTCAACTGCATTATATTCT ATTCTCCTTCTTCTTTGCTTTAAGTACAGGCAGGTGCAGGTGTATATGTAGTGACTCCATAAAAGACCTA CAAAGAACTATGTGCAGCTAAAAAGACATCCATAGCTTAACAGAGCTGGATCTCGAGTACCTCTCTCCTA AATCTTGGCAGAGAGGTACAGGTGACGGCGGCTTGGGGTAGTGAGTTACAGAGCCTCGTGGCATCAGGAA AGAAACTCCTTTGCGGTACTTGTGTCCGAGCATATTGCACTTGGAGTTTCTGGTCGTGGCCTCTGTGCGA AGCAGGTATGGCCATTGCAGTTGGTCAAGCATAGCTGTGACAATGCTTCTTCTGTGATGGTCATTGCAAA CAAAGCGTGCATATCTCCTCTGGATCATCTCTATATTTCCTGGTGTTGGCTTGGGTAAAGGGATCCCAGA TGATGCTTCCATATTCCATGACTGGTCTGAGCAAGGTCAGATAGCAGAGCACTTTGACTTTGTGTGGGCG TAATCTGATGTTCTTCTGGCGGAAGGCTCAGTTGGGTTTAGCCTTTTTTGTTACTTTGTCGATGTGGTCA TTCCAACTAAGCTTCTTGTGTAGATGGATTCCAAGATATTTTGCTGTGTCTGCATTCTCCAGAGTGTGTC CATGAATGATGTATGACTTGATGATAGGCTTCTGTTTGTTGGAAACATGGAGGACCTGGCATTTCTTCGG GCTGAACTCCATTAACCAGTCAGCTTCCCGTCGCTTCTAGAGTTGTGCACTGTCGCTTCTGATCCAATTT TGCGATAGACTCACTAGGCAGTCATCTGCAAAGAGTCTAACAGTGGTGTCACAAGACATGTACTCTGGCA GGTCATTAATAAACGGCAGAAATAACATTGGGTCGACGACGCTACCCTGCGGAAATCCAGATGTCACTTG GGATTTGGTAGAGACGGTTCCTTCAAAGACTACCTGCTGCGTACGATCACAAAAAAGTCAGCCAGCCATG CATGGGTCGAGTTTTGTATGCCGTAGTAGTCAAGCTTATGAAGAAGCCTTCCGTGTGGCACCTCGTCAGA GGCCTTGGCAAGATCTTGGACGGCAGGGTCATTAGCTGATGAACAAATCATCTCAGCATATATGGGACCA TATATAGAATGAACCACTGCACTTGGGACGTGTATTTTGTACATGAAAGTTGGGCTAGAAGAAGTGCAGC TTTGTGACATACTCTTATCAGCTAATTGTTACAATACTGAATATGAAAAGCTGTATGGGTAATGTTAGAT TGTACTTCAATTATTTTCAGCTTTGAGAAAGTACATGATTAATCTTCAGTCTTGCATTTCACATCTTGGA TAGTTTTGCATGATTTAATTGTGCTTACTTATGCATACTGATTAGATATGTTTGCAATATAGGAAAGTTT CAAGTAAGTACATGTATTGTAGCTTAAAACCTTTTTTGCAGAGACTCTGTGTATTTTGGCTAGTCCAGCC TATTTTTGCCCAATGGAGTTGAACTATACATGTACGTGTGTTTGTTTGGCATAAACATTTATCTCTTTCT CAAACTAAAAATGGGGACATGAATGGAACCATAAATTTCATTCATAAAATATGTTGGTAATAGATGTCTG AATAACCTTTAGAAAAATATTTAGGGTACTGTAAATCAGACTTTCGCGAAATGAAACTTGTGCAGGAATT GCGAAAAGTTTGTGTTCTGTCAGTCAAGAAAAAAAAAATTCTTGGCAGGAGTTTTTCGCAGAATTGAGCA CTTCCCAAATTTGCCAAAGTTACAAGCATAATGAAAGTTTGCAATATGTAAAAACTCTCAGTTACATAAA TGTTCATCTTTTCTGACGACATCCATTTCACTGGCTGCTCTCTGTACAAAGCTCGACAATACATGTAAAA GACAACATGACACATGATTCATTATGATAGAAATCTCAATTTATTGAGCATAATTATCAATTTCCCTCTC CAGTATAATCAGTAATAAAGATCACTGTATGTTTATTTCTTTGTCTTCCTGAATTTGTTAATACAATGTA CATGTACATGTAAATACAAGCTAGATAAACTATCGCAGAGAGAAAAGTGTTGTGAATTTCATTCTAATGT GTACAGTGTTATATCTTTTGAGCAGTAATAGGATATGCATTGGAAGTGAATGTTATTACATAGAAGAGAA TGAGAGAGATAAATAATTCACAAAGAAGATATTATAAACAGATATTCGTATCTCCTTCCCATTTTATGAC AAATTAATTGATTTTTTTAAAATTTAAAAAAATTTTAAAAAAAGAAACAAGCTAATCATGAATGTTAGTA TGTTTAAATTTGGTAATGACAAGCCTGAAGGAAAGACATGTAATTTGAACACAAAAGCAAAAAAAGTGAA TTTTTGAATAATCTACTTTGAAAACAATATCTAGTACTATCCTATAACATCCAATTTATCATCTACAGTA ATTATCGCAATGACTTGTAACAAAGATTTGTTGCTATAAAGAAAACATGAAAACAGTCATCAGCAGAAAA GGCCCTTTCTTTTCTCCAAATAAAGAAAACTGTTTGCACAAAGAATAGAGAAAGCTTTGACATTTCATCA AATTTGACTATAGTAAATGTGACCGCTTCCTGAGAAAGAAAATGCTGTTTTCATGATCATGTGATATACA TACAGTTTAATTTGGGGTCAGATGGTTTAATTTGGGATCAGATGGTTTTAAGAGTCCAATGATGTTGAGG TCTTTGGTAAACCAATACAATACAGCATGGAAACAAAATTACTAAGACTTAAACAAGTTACATATCACAG TGTTTCTGTGGGAAGATGAAGATAAAATAATATAAGAGCAAAGTAGAATTGCAGCAGTATGGAAATGGAA TACAATTTTAGAAAGTTTTTTTTTAAAGATCATTTTTTTTTATAGTTGCATTCATTACACTAAACCCCTA TTATAGGAGCTGATTATGTATGTATGTATTGGTGCACTGTAAAACCAGAAGTTTTCACGTACAAGAATCT ATGGCAAATTTTGTATGTGGTCTAGATTCACAAAAGTTTCATGGCATTGGCAAATTGGAAGACAGGCCTT AAAAAAATGGTCTCAATTTATGCTGCCAAAGTGAGGAATTAGTGAAAATGCCATGTTGTGAAAGTTATTG GTTCTACAGTACAGCTCTACCACTTCATGAATAAATGTTAATCATGATTTTCAGACTTAAAGGCGAACAG GTAATGAAATAATCTTTATTCAAGCACAAAAATAAGGCAAATTCAGTCAATGAACATAAGAAGATCATAC ACATATTTAGCATTATATCTGGGATTAATGCAGAGAAATTGGGAACGGGGGAGAATACAGAAATAGAGAA TGAAAATAAAATAGAGTTATGACCTCTTCAAAAGGTCGAAAACAATACATTTGGATGCAAGTAAATAATA CATCAGTAGTGCAATGTAAAACCAATGTAAAACCAATGATTTTACCAATGCTTCCATATATATTGCAGAT AACAAGTGTCATATTGTAAACATAATGTAAACATGTAGTAAATCCCACATTCATATCGCTCGTAGGTATA GACTTCTATGAAGTCTTTGGCAGAAGTTTCTACTCCAGACATGATTCAGGTAATAAAATAGAGCTCCAAA TTCATTACATTCAAAATTCCACACAAGTCTGAAATGTAAGACAATAGTCATCTACGCTACCCCCAATAAA TCCCATCAAATAGCACTTGAGCTTTCCTCCAGCAGGCATAGCCCCTTCTGATTTGTAATTACAAGAGAAA TAAAGCTATCTGTAACCAGACACCACAAAGCAGAAACAAAGTAACAAAAAATTCCTTTTCTTGATATTTC TATCTTCAAAGTTCAGGTTCTGAACAGTCCCACAGCATATGAATATTTTGCAGATACAGAAAGAGAATTT TAGAATTATTAATCCCTGAACAACAACTTTCTTTAATTTTCAGTTTCACTGATATGTTATTAACTTTGTC CAGGCTTTGTGGTGACTAGCTGCAGTCTCATACTCCTAAGTAGTTCTACAATCAAATGAATACAACTTTA TCTTTTCTTCCAGTCTGCGCTTTAGCAAAAATTGTCTGGATGCTTGCGAAGACGGCGTCAGGTGCTCTAG CAGCATCGACACGTTGATGGATCCCTCGTTTGGAGTAATAATCAACGAGAGGTGCAGTCTGCTTGTGGTA GGCTTCAAGGCGTGTTTTCAACGTTACCTCGTTGTCGTCTGATCGCTTGATCAGTGGCTCACCAGTTACC TAAAACAAGGGGAGAGGGAAAAAGGCACATTTGTAATTATATGTACATGTACAATCAAACCTGTACACGA ACACTGCTCACATGGAGCAAAAGAAATCTTGTTTCGGTCTGGTACTGTAGTCATCGTATACAGGTTAAT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds