Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038210368.1 PREDICTED: Patiria miniata uncharacterized LOC119736358 (LOC119736358), transcript variant X2, mRNA CCACACCCGTGCACAACTGATGAGCATCGAGAACTGTCTACGTGTACCACCTGGCACGGAAAGATAATGA TGTCATGATGTGTCGGATCGGTTCGCGGACGAGACTTTCAAGTTCCAATCGACAAATGGATTTTTGGAAA ACGTGAAAAATGTCGGCAGTGAGATAAAGCGTTAAGCAGAGTAACGGCCTCCAGCCACCATGGATTCCTT CATGGCCGCGGCGTCTGATCTGGACTCCATTCTGGACCAGTTTGAGCAGAACGAAGACTCAACCTTTGTG ATGCAACCAGAGCCCGTGCCCATCGGCAAACCGACGCTGCAAACCTACCGGACCCCCAACTCCACCCAGG TAGTGAACGGCGGCAACGGGTACCGCACAAGCCAGGAGACGGGTGGATACAGCTCTGTGGATAACAGTAG CCTAAGCAGCAGCCAAACCACGGTACAACATGAACCCAATTCGACCGACTTCCTGCTGGATCTGTCCGAG GCCGACTTTGCGCCGGCGGCCCCGCAGACACTGTCTCTAAACTCCCTGGGGATCACGTCGGACTCTTACC AGCCAGCGTCAACTTACGCTGTGCAGAGTGTTGTGAGTGCCCCAAACCAGTCAACCAGCTTGGATGGAGG TAATCCGGGTGTGCCCACCCACACGAGTAGAACTGACTACTCTGGAGAGCCTCTCTCTCAAACGAACGAG ACAGTCACTTCTCCCACTCCCCCAGTCAGTTCTGCATGGGTCGTGGGTGGTATCCCTTCAACTGCAGACA CAGGATCACTCATGCCGTCGGTTGCTGAGCCGCACGTCTTGGGAAATTCTGATCAGGTTCGTTCCGGCTC GCCATCACATGGCTTTCCTAGTGCAACTGTGAGTTTCGGAAACACTGATGCAAAAGGAGCCCAACCCAGT GCTGTGAGCCAACCGTCGCAAAATGAAACAGGACGGGGAACACCACCTGTGTCAGGCAACTCACTGAGCA TGGACCAGTCGCCGAGGAAAGAAGGGGACATCCAGAAAGAATCGGATGTAAGCACAGAAAAGCAGGATCC CAAATCCGGTGCGACCGAATCCAATGAATCTGAGGTAAAGCCCCTTAGCACAGCCTTGATCCCAGCGCCG CTAAGACCTGAGCTCATGCACGAATACGTCAAACAAGGAGCAAGACCTAAGATCATCACCAACCTTAAAA CCCCGGATAGTCCAGTGAAGGCTGTCAACGAAACAGCAACAACCCCATCAAAGTCAAACAAAGGAGTCGG ACAACCAAAGCCCACTGTGGGCTTTGGAAACATTGCGAGTGTCAAAGTAACGGATGCTGATCTTGAAGCA TTAGAAAAAGAAGTTGGCATCATGCCGATGCAAGACAAAGGCAAACCTGTCACTCAGCCTGTACATCAGC CACAAGGAAAGCCCGGCCATCTGAACATTGACGACTTGAGCGTGCCAGGAGATAGGGTCAGCCCTGTGTC CAAGCTCCTCAATGAGCAATACACCAAGTCACGGCACCAGGAGCCCGCCTTGCAACAGGGCAACGAGCTG GCTGGCTTGGATCCCTTCTTCAGCCAGAATGGCTCGACATCCAGGCCGGATGCGCTGGTGTCTGCCGTCC CAAGCACACATCTACTTGATGCATCTCCAGTTCCCCAGTCGGGCATCTCTCCCACAAACCCTTCACTAAC AGCAATACCCGCAGATCCCTCACCGCAAAGCAGCACCAAAGAAACCGCTCTTCCCAATGATGTGCTCAGT AAAAATGCCAAAAATCTCCTGCGGAACAACCAGGCATTGCCTGGTAGGCAGCCTTACGGAAGCAGCCAAG TAGAAGACCCATCAACTCAGATCAACAATAGCAACTCCCAAATTCGGGCATCCAAAATACCAGTCAGCGG AGGACAAGTGCTTACTACCTCCCAGGCCGACCTTCAAGGAGTGCCCCCTGCAGTGTCTGCAATAGCGGGG ACCCAAGGAGTCCAACCTAGACCTCAACCAGACATCAGTTCTTTGGATCCCATCCCCAAGAGCAACACTA ATGCCAACCAGCAAAGAAACCTGGCTTATCCGGCAGGGTTTCCTGCCCCGACACCTGGCACTAGGAGTTC CACAGACCAACGGCAGCCGCAAGGAACTGCCCCAACTCCTTCTTTCTTGCCGGCTGACCCGCCAAGCTAT CAAGACGTCAGGAATGCAATGGGAAGTGAGACAGAAAGAAGATCAGATGGCCTTCGGCAGGGACTGAGCC TGAATTTTGACCAAGCGGGCCCACGTAAGGTGGCCCATGCGCTGCCCCCGAGCCCCATCGTCGAAGATAT CCGGGGAAGAGATGATGCATTCGGCGCGCCTGTCCAGAACTCGACGTCTGAAAACCTGCACCCGACTCGG GTAGACATTACCCAGCAGCAATCATTCCAACCTCCACCCCAGGTCCAGCAACCCCCGGCCGACGTCAACC CGCCGGCGTTAGTCGCGGCTCCCAACGTTGTCGCCCAAAACAACCTGTTCCCGGACAATGACTCCATCAC GCCATCCAATGAGACCGACTCCGAAGAAGGGGAGTTTAGTAGACGGGTGATGGACTATTCCGAGGGCGTC ATGCAGCTAGGGGCTGTGGCGCCAGTCTGGGTACCAGATGCAGAAGCCCTGAACTGCATGAATTGTCAAC AGAAGTTCACTTTTCGGAAGAGGAGACATCATTGTAGAGCATGTGGCAAAGTTTTCTGTGCCAAGTGCTG TTCTATGCGTCTGAAATTGAAGTACATGGAGAGCAAGGAGGCCAGAGTCTGTATCAGCTGTCTCAACGTC ATCCTAAGAGCGCAAGCTCTTCAGCGGACCCAGGTGGAGAACAATCCAGTTGCAGAGCCCATACCGCCCC CCTCGCAGGACCCAGACAACCTCAGCAACATCAGCAATACCAGCGAAAGCCTGGCGGCCGGGAACATTGG GAACAGATCCTCACTCCGCCGACCGAGCTCTGACGGCTCGCGTCCCAAAGAAACACGCAAAGTTCGTTTC TCCGACGGCCTCAACCCGGGCGTTGAGCAACCGACCCAAGACGCAGTCGTCATGGGCGGTCCGACCCCCG TCGGGATCGAGGTTGGCGGCGTGCCTCCATATGCAATAGAAGGCAGACCCAGGGGCCTTGGGGATGCCTC AGCGTCCAGCCTTATCCCTGGGAATGAGGAAGGATTGCCTCCCGTCATTGTCGCTTCAGACGCCAGAGGA GAATTCAGTGTAAGGCCGAACCCTAATGCTGATGAGCTTATACAAGAAATGAAAAACGCAAGTGCTCTAC CTGTGGTATTCGCTTTGAATAGAAACCTGCTAGTCCGAACAAAGATCTTGGATTTGAACTGCTGCGTGAA CAGAACCTGCTGGTGTTTCTCCACCAAGGGCATGGCCACGGTGGGGCAGGACGAGATCGTCATCGTCTTG GAGTGTCTACCGGACGAGAAGGCGATCCCTAAGGATATCTTCCATCATCTCCAGTCCCTGTATGAGCAGG CGTCTAGAGGTACGACGGTATCCCACATGGGCCACAGTCTCTTCAGTCAGAGTTTCCTGGGCGGTCGCGA GCATGGAGGCTTCCTCTACCTGCGACCGTCCTTCCAGTGTCTGGCCAAGCTGTTACTCCCAGAGCCGCCT TACCTCTTCGCCATCCTGCTGCAGAAGTGGGAGACCCCCTGGGCTAAAGTCTTCCCCCTGCGGCTGTTGC TGAGGCTGGGAGCGGAGTTCAGATACTATCCTTGCCCGTTGATGAGTGTGCGTTTCCGCAAGCCGGTCTT TGGGGAGATTGGACACACCATTATGAACCTTCTGGCTGATTTCAAGAACTACCAGTACAAGTTGCCAGTT ATCCCCGGCATAGTCATCCACATGCAGGACCGGGAAACGCTGATCCAGATACCAAGAAACAGATACAATG AGGTTATGAAGGTGGTGAACAACTCCAACGAGCACGTGATGGCCATCGCCGCCAACTTCAGCTCGGAGTC AGACTCCCATCTCGTGTGCATCCAGAACGACGAAGGCACCTACCACACCCAGGCAATCAGCATACAGAAC AAACCAAGGAAGGTTACCGGAGCCAGCTTTGTTGTCTTCAACGGCGCCCTGAAGACCACCTCGGGCCTGA CGGCCAAATCCAGCATCGTGGAGGACGGCTTGATGATTCAGATCCTGCCAGAGACCATGGCAGCGCTGCG TCAGGCCCTGCGTGACATGCTGGACCTGCCCATACCCTGCGGGGCGTTGCAGGCCGAGCAGCCCGACGAA ACAGTGACCGTCAAATGGGTGGACGACGACAAGACTATCAATATGGGTGTCGTGAGCCCCATCGACCGTC GCTCCTTGGAAGGCGTGGACAGCATCCGCATCCACAACGGCACCGACTTCCGGGGCCGGTCCCACTCCCT GCGCTGGACCGAGGTCTTCTTCCTGGAGAGCAACGAGTCGCCCGTGGACCTGAGCCGGCTGGCCGAGATG CTGTCCTCGGCGTTCTGCGTGGCCATGACGGGCCAGCTGGATGAGCTGAAGGAGGCTGGCATGGTCATGC TGGCACTGCGGGTGACCGTGGACTCGGATAATGTCGGCTACGAAGCAGGGTCAAAGGGCGAGGTGCTTCC ACCAGTCTACATGAATGAACTGGACAACGAGCTGATACCGGTCTTACACAACGCCGTGTCGCAGCATGAA GGGGGACCGGTCGTCATGGAGCTGGTCTTCTACATCATCGATTGACCCCAGACTTGGGCTAGAGTTTTGA CAAGTGGGAAGAAAATGTGGGACTTGCACCCGATGATGATCAAGATGAAAAAAGAAAAAAGCTGTAGAGG TGGCTTAGAAAGGTCATCGTCTCATCACTTTGAACAGGAGGACAACATTACTGCATTCCACATTTTGGTT TTTTTTTACACAAACTGCTGTATTTTTTGGCTTCTAAGAAAGAATAAAGATGCTTTGTTCAGTTTATTGG CGCAAAAAAGATATCTTCGTTGACTTATCTGATCTAGAGAAATTCAAATAAACACCAACTGACACAATAT GCCTATTTCTGGCAATCCATGTTTATATGATTGTAGAAATAATGTACAGTTAAAATACAACAGTAACAAA TAATATAAACTATTAAGTTTGCATTTTCTGCTATAAAAAAAGGAAGATGCAAAATTTCGTTCGCTTTTCA TTTTAGAGATTTTCGAAACATGGGGCCGTTCTACTTAACATGTAAACAATAACGCAAGACGTGTTTCAAA AATATTGTGCTGTTCCTCAAGTTATATTTTTGTGACGTAATTTCTCTGTTTCTAGCATTTAGTTGTTAAC CTTTATGCACCGTTGCATTTTGTCTTCACACGGAAACAACCGTTGTAAAATGTATCACAATGATAGAGCC ATTTCATATTTCTAATATTGAGAGCAATTTGGTTATTTGACTTTTCCTGTGTTCACGAGTTTTCGGAAAT GTTTTAAAAAGTATTTTCACGTTTAGAGGAACTCTAAAAGAAAGTTGTTTGGAACTGCACTGAGTATACT AACTGGGATCTGTCTGATAATTTAACGGTCTAAATTAAAACTTGATTTTTGTTGCTGTATTTTTAAGTTT TGGCTTGTAGCAATGTGTAATATATTTTCATGGATATTCACTTTAACATGTTATTGGTTCATTGCGCATA ACTTTATTAATACATCATGTACATTATACTGTACATTTAACATAACAATTTCTATGATTTCATGCAAATA AACAAAATATGTACATCCTCGTAAGTAATTTTCATGTTTGTAATTTTAATCATGGGTAGATTAAATTCTG AACAGCATTTTTATTAAATGTAGGTCCAATAAAAATGATTTTTGAAATGATGCAAACCTAATAATTCTTG TGTGTGTGTGAATGGAGCCACAGGACCTATGTGCATTGTAGACTGCAGAGGGGTCTTTCTGTAAATTTGG GGCTCTAAAGTGTGACTTTTTTGTGTCCCCGTTACAAATGACTTGTGTAATTTACCGTGCAAGTATCATT AAAATTGACATCAAACTATTTTTTATTTGTGTGGCTGGCACTTTGCTTTACATAATCACTCTTGGAGATA GAAGACATTAAAGAATATGTCCAGAATTTACATAATCTTATATCCGATGTAACGGGGACACAAAAACAAA AAACCCAGAATTGTTTATTCTAGCTGAGGGCTCAGATGACAGTTTTACTTGTCGTAAGGAATGCACAGAC TATCACAGATTGTCTCAGATACGTGCACTTAATTGCTGCTAGGAGCAGTCTTAATAATAAAAAAATGACA ACTGTGATCTGATAATAATTGTACCAATGTTTCACATATGGTGTATTGCTCTCATGAGTTTTGTCGTGAA AAGATGCGCAAACAAAAATCTGACTTTAAATTTTATTTCCATATAACTTTGTTTTGCAAGCATTTAGCTA TTTAACCCAAGTTTAAATATGATATTTAAGCCACATTCTTCTGGATACTAATGTCTAGCACCATTTTTGA AAAACACTTACACGTAGATTTTTTTATCACAGTATCAATAAAACTGAGCACTTTCTTTCACTACTTGTAG ACTTAAACAAAAATCATGTCTTGATAATATGCACACTGGGAAAGTGTGGCATTGATTTAAAAAAAAAAAA ACTGGTGTTGGCTTTTGAAAACAAATAATTTGTTTCACTTTTTGGTCATTTTAAAATAAAATTGAGAAAT ACACTTATAAAAAAAATTTCAAATCTTGAGGATTGCGAAAACAATGCACCAGCACATTCCAGATGGAACA ATTAAAAAAAGCAAATAATTTACAGTATTTTGGTTAAAGCTGATGTTGTGATCTTTAAGCAGTGTTCATA ATGTGCAATTATAGGGCTAGTTTTTGTGATGATTTTTTTTTAGCCACTGGGGCCACAAACTGAAATCATA CTGTTATTACTCGTCATGAAATTACACAGTCACATAATATTTACTTTAATATCTCATGTTTATTTTGCCT TTATACACAGGGACGACAATATGGAGAATATACGGAAAGAATGTAGTATTCTGACGCCACTTCTGTGGTT GTGCACAAAGTCTATGGAGAGTTGAGTGCATTTTCAAAGTATTTTCTAACAAAATTGGAATTGTTTCTCA GTCCCAGATTCATGTCTTTTTCAACATTTTTGCAATGACTGACCTTCATTGAGATAATATATGATGAAGA AACTGGCGTCAGGATGCAGCATTCTTTCCGAGTATACATGTAATGTTTGCATGTAAATCCAAGAAGATAA GCGGTCATAATTTATTAAACATGAAAGTAAAACAAATTTGACCTGGGCCAAACTGGAGCCCCTTTATGCC AAGAATCTACCAGATTTTTTTTGAATTTTTTTTTTTACTTCTCTCCAATATGTATACTTCCAAGGAAGGT GATGCACAGTTTTTTTTTTATCTGAACGCTTGAATCAGCAAAACAGCAAAGACTGCCATGTAATTATGTA ATGGGAATAGATCAGTGGAAATAATAATCTAGATGAAGGTATTTTTTAGGAATAGTATGAGAAATATCTT AAACAATATGCATATGTATACATCAGACAGTTGTAAATGTGCGTAGAAGGCGTTTTGTACAAAAAA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds