Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>JT113397.1 TSA: Strongylocentrotus purpuratus WHL22.260882.1 mRNA sequence CTCAAACAGAGCCAGATTCTCTTTTCAAGTGGAATATGAATGATTGATATCCAGAATATATTTGATCAAA GGATGACGAAGTGCTCTTAAGATGTTCTTTGGATTTGAGATTCACCAGTTACAGACTCTGTCACAAGTTT GGAAGGAATCTTGTGGAGTTCAGGAGGGTGTATGTTAGCTCATCAACCCTAGATGTGATCCCTTTGCATG AATCCTATCTTCAGACGTCCATAATTTGACTTGTGTATGATATTTGTTTTGGTAACCTCCTTTAATACTA AATTTGCTGTGAAACACACACTAAACTAATCATTCTGTCGAGTCATTGACTGTATGTTTGTGTGAGGTAA CTTGCTTGTTTTGCACCCCACTTCCTTTTGTTAACGGAAGCAACAGGGGGCGAGACTAAAACTTTACCGA GATGTGCTAGAACTGTAGTGCAGAAAGTTCCCGTGTCTTTTTGCATGTTGGTTGAACTGAAGTGGCTTTA AAATGAGTGACAAGAAAAGACCCTCATTTGTAAGGCAGTCGTCTACAGATGGAAATCGTGGTGGAAGTCT TTTGAGAACACCGAGCCTGGCTGAACGTAAAAACAGTGATCGAAGCGATCCTGATGTATCTAAAGTGGAA AATACACTTTACGATCTGTTAGAAGAAGAGGAGAATCAAATTACTAATCCATCATGGATCCGAGAGAATA TTCTTATGAGAGAGTGTACTCGCTTCACTCCGGCACCACCTGATCCCAAGGATAGAAAGAGAGATGAGGA CCCCAAGTGCCAGTGCAAAAAGAGGAAGAAGAAACATCAAGACAGATTTTTGGAGAACCCAGACCCAAGT GCCAAATGGAAGGTAGAAACCCACACCCACACAATTGCCACCAATGCCTATGGAGAGATAGAGTTCATAG GAGCTGTAGGAGGGGCTGTTGGGCAGAAAGCAAGGAAGTTCATAAGAGTGGATTATGACACCGCTCCATC CAAGCTTCTCTCGCTCTTTGAAGATGTTTGGAAGCTAACCAAACCTAAACTCCTCATCTCAGTGACTGGC GGAGCACAAAACTTTCCCCTCAATCACAGACTCAAAGATGTCTTTCGTAAAGGACTCATCAAAGCCGCTA CCAGCACAAGTGCCTGGATCATTACGGGAGGCACCCATGCTGGTGTGATGAAGTATGTAGGAGATGCTGT GAGGGACCACAACCTTGCCAACGGACGGAGCAATGTAGTCGCCATCGGTATAGCATCATGGGGAGTAATC ACAAACAGGGAAAAGCTCATAGATGACAATGGCAAGTTCCCAGCTTCCTACAACATGGATGCCAAGAAAA GCAATACAATGAACGTGCCTCTTGATCCAAACCACACCCATTTCATCCTGGTTGACAAGGGGAGGGTAGA CCAGTTTGGTGAGGAGATCACACTCAGGGGCAAGTTGGAGAAGGCCATTTCAGAGGAGCAAATACAAAAA TCCTCTGGAAAATCTGCACCTGTGTCAATACCTATCGTATGTGTGGTCGTGCAAGGTGGACCCAACACCA TTCAGACGGCTTATGAAGCCATCCGAAACGGCACCCCTGTCGTTGTAGTTGCTGGATCAGGGAGGGCAGC AGACATCATGGCCTATGCATTCCAACACACCAAAGAATACAAGACGAAGGAAGGAAAGAAAGAAATAGTG AGGAACGTGATGCCAGAGACCGTCAGAGTGGAAGTTGCCAAAATGATCGAGAAGGAGTTTGGACAGAAAC AGTTGGACCTTCACCTTACTCGTATCGAGGCCTGCATTCAGCACAAGCATCTTATTACTGTCTATGAACT GGGTGCCAGTGCCACCATGGACATTGATGGTGCTATCCTTCACGCTCTTCTCAAAGCCAACAAGGGACGG ATTCAGGACCAGCTTCGCCTTGCTCTGATCTGGAACCGTGTGGACGTTGCCAAGCGAGAGATCTTCACTG ATGATCGAGAGTGGGGGAAAGGGCAGCTGGATGAATCCTTGCGCTATGCCTTGTCCAATAACCAAGTCAG TTTCATTGAACTTTTCTTGGAGCAAGGGGTCAATCTAAAGGACTATTTGACCATCAAGGAACTGACCATT CTCTACAATGAGATTCGATCCAATTCACTTCTGTATGAGCAGCTGGAGAAACATAGAGGAAAGTACTCCA ATTACAAGTTCAACCTTGAGCATGTGGGCAAGGTCATCCGCGACCTGATGTTTGATACCTATCAACCCCT CTACCTGCGAGATCCAGGGGTCTATGTCCTCCTGGATGCTGACATCAGGCAGGATGCGCCTAAACAGAAT GAAGCATACGATGACACCGGTGATGATGACTCTTATACCGATGGGGAAGACCTGGATGAGAATGATACCG GTGCCACGCCTAGGGTCGATCCATTTTCTCTACAGGAGGGACTTGCTAGTTTTGGAAATGCCATGATGCC AGCAAATATGAAGAAGGGCTTGCAGCCCAACCAGTTTGAGTTTCCCATGAGGGAGCTATTCGTCTTTGCC ATCTTGCAGAATTGGCATGACATGGCCAAGCTTTTCTGGGAGGAAGGCAGGGAATCCATAGCATCGGCAC TGGCCGGGAGTAAGATGCTCAAGGGTATGGCATCCAAGGAGGATGATTCTGACCAGATAGCTAACATGGA AGAACATGCAGCAACCTACGAGGAGCTAGCCATAGGAGTCCTGAATGAATGCTATATAGAGGATGAAGAA CGTTCAGCTTTGCTTCTTGTTTGTGAGCTTCCGTACTGGGGGAATTCTACGTGTCTTAGTTTGGCTGTGG AAGCAGTGGACAAGAACTTCATTGCACACTCTGGAGTGCAGAGTCTCCTCACTCAAATCTGGATGGGAAA GATCTCGGATGAGACAAGTCCATTTCACCTATGGATGTGCACTGTATTCCCTCCATTGATATACTTCCTG GTGAAGTACCGTGAAGATGAAGGTGATGAAGAACAAGAAGAGCTTGAGAAGAGGCAGAGCTTGAAGAAGA AAAAGAAGCTTCCCGCTGCCAAGTCAATAGATGATGTGTTTGTTGCTGAAGGTGATCCAAGGAACAAGGG TATTGAGATGGGTGTGGTAGTCCATCCTCCGTCAGACAACGGAGACAATGGAATGGCAAGCCAGACCATG CTACTTGAGAACAAGAATGGACATCCTGCCAAGCCCAAGCCAAGTGAAGATAAAGACGAAGATACGTTCA GCCTCATGAACGCTCGGCTAGACATAAGGGACAGTGGCGTGGATCTGTCCTGGTGGCAAAGATTCAAGTT CTTCTACGATGCGCCAATGATCACTTTTAGACATAATGTGTTGTCCTACATGGTCTTCTTGGTGCTGTAT AGTTATGTCATCCTTGGCAAATTTGCGAAAGACTATTTTGAGTATGTGCTCATCATCTGGGTAGTGTCTT TGTTCACAGAGGAGTTTAGACAGATTGCACAAGGTGAAAACAGCAGCTGGTCGAGCCGCCTTTTAGCGTG GATCACCGACTACTGGAACATTCTTGACCTGGTAACGCTGATCACCTTTGCAGTGGCTGAGATCCTGAAT TTTGTCGGCTTTACTGAAGCAGGTCACGTCATCCTCTCCTTGAACCTGACCCTCTTCTTCATCCGTGCGC TCCATATCTTCTCCATCAGCAAGCAGCTTGGACCCAAACTCATCATGATCCAAAGGATGATGGTTGACCT GATGTTCTTTGTTGCCATCCTGGCTGTGTTCCTCATCGGTTACGGGATTGCATCTCAAGCCATCCTCTTT CCTAACGAGACGGATGTCAGTGTCATCATGAGAGGCATCCTGATGAGGTCATACTTCCAGATCTTTGGAG AGCTCTTTCTTGAAGTCATTGAAGGTTCTGACTGCACAGACAATTCCACTCTGGTTGATGGTGTGGACTT CTTCCCATGTCCTGAACATTCCTGGATTGGCATTATCCTCTTAGCTGGTTACATGATGATCAGTAATGTT CTACTTCTCAATCTACTCATTGCCATGTTCAGTTACACCTTTTCAGCCATCCAAGACAACACTGACACTA TCTGGAAGTTCCAGCGCTACGATCTGATCAAGGAATACTTCAACCGCCCCCCTCTCACACCACCATTCAT CTTGGTCTCTCATTTCTTCTATGCGGTACGCTTCGTCATACAACACTGTTGTAGAACTTGCACCCACTGG AAGATACCTGAACTCAAGCAATCGTTGACTGATCAAGAAAAAAAGACCCTTGTTCTATGGGAAGGCATCA ATGCAGATAACTACACAGCCAAACAGAGAATATTGGTGCAACAGGACCTCAATGAGAGAGTCAAAGTAGC TGGTGACAGAGTGGAAGACATGACTATGAAGCTAGACCAAGTCTTTGACGACGCTGAGAATCAAAAGGGT AAAGCAGGACCTCTCGGGATGCATGGAGGAAAGGGCTTTGAAGAAAGACTAGTCAGATTGGAAAACGGGA TGGAACGTACCAATGATGCCCTGGATTGGATTATCAGTGCTCTTTCAAGTGGCGGTAATATGGAGGTCAA ATTGGCACCACCCAAACTCAAGGACATCCAAAGGAGAGAAGATTCCGTAGACATTGCCGAGGAAGTATCC AGATTTGAAGTGCCTGTCTCCCTAGAAGCTCTAGGTATCATGATCCATAAGAAGTCTCGGGCCAGTCCCT ATCCTGGGACTGCCATGAGAAGATTCCCTGTTCCAGACGACAAGGTTCCTTGGGAGACCGCTTTCCCGCA CTACACACCAGTGCGATACACTCATCGGAGTGTAGAGGAAGGTCCCCACTGGGCAGACATTGATCTCATG AGCATGCCAACGAGCTCACGTTCAGTACTCCTCTTCAATCAGATGGATGTGCAATGTAAATACAACAGAA GGAGTCACATGAAGGCATACCAAATCAAAGACGGGCTTCCACTAAATCCCAAAGGACGTACAGGACTCAG TGGTAGGGGTCTACTAGGAAGATGGGGTCCGAACCATGCAGCTGATCCCATAGCAACAAGATGGAAGAGG AAGCCAGATGATGGATCCATCTTAATGGATGAAGACAAGCCAGTCCTAGAGTTCATTGCTATACAGAGAG TGGATAACCAGCAATGGGCAATACCCGGTGGTATGGTCGAGCCAGGTCATTTGGTCAGCGAGACTCTGAA GAGAGAGTTTGGAGAGGAGGCCCTGGGTGCTCTCAATAAGACAGATGAAGAAGCTGCTCGCATCGGGGAA CATGTCGAGAAGCTCTTCTCAAACGGTGTCGAGGTATACAAGGGTTATGTGGACGATCCAAGGAACACCG ATAACGCCTGGATGGAGACGGTCGCAATGAACTTCCATGATGAAGATGGTTCTGGCTTTGGTTCTTTCAC TCTTGAGGCTAGCGACGATGCTCAGAGTGTAAGGTGGCAGCGAGTCAGCTCCAAGATCCCTCTATTTGCC AGTCACACAGCCATGCTCAAGAAGGTAGCCGAGTTACATAAAGCTGCCTTCTAAAGTAACACCCGTCCTC TGTAGCGGCAGGTGGCCCGGCAGCAACGAAGCCTTCAATCAACCAGTCACGTCTTTCTGCAAGGTGCCTT TGGGGTTGTTTTCATACCTCCACTCTTTTTTATGTAAATATCTCAGAGCAAACATTCACTGCGGATGTTG TCGTCCATGTTTTAAGGGTAATGAATTACGCTGTTATGAAATAGCCAAACCACAGAGTCATTTTTTTAAA ATGTCCATATTGTGTGACCATGTATGTCTGTAAATGTTATTTTTGTAGTAAATCCTGATTAGAAAGAGTA AGTGGGAAGAGATGTGCAATTCCTTTTATTAGAAAGATCAGAGACGATCCTTAACGTATCTTGTAACAAA TCTAGTCGTATCTGTATGATGTATCTATATTATAATTATTTGCATGTTTATTAGCTGCATATTTGATACC GCAAAATGATCTGATTGATCAGATTTATCTTTTTTGTCACAAATAGAATATTTTCATGTATAGATCTCTT GGCTTATTTTTTTTTTTTACTTGTTCCATTCTAATTTTCTTATTGTGCCATGCCCTAAACACCTGATAAG GATTTGTTTTTGTGTGATTTTTTTATTACATCAAAACCTCCCTTGCCAATCTACATTTTATTATAGAGAG GATTAGATAGAGAGGATTAGTAATTATACATTAAATCTGGTACATTGCTACCCCTTTGCTGGGATTACAT TGTTCTAAAAAAGGAAAGAGAGCACAACCAGTATGAAGAATTATGTGGGTAGCCAGATAATATTGTCTGA TTTAGACTCGTAGGGGGTGTGACTGTCAGTTTAAGCAATTTCCTAACCTAATTGATAATGAGGAAAGTAG GGTAAATACCATTGTATTGGGCACTGGAAATGTGTGCTCAAGGTTATTACTGGTACCCTTTGCCTATTAC CGTATTAAGTACTCATGCACTTATAATTCTATTTTTGTCAACAACAAAAAGGAGAGAGAGAATCAAAAAG ATAATTGTGTCGAAGGACAATTAAGTTATCGCAATCGTTATGTTAATAGAAAGAAGAAAAAAATTCTATC ATGTATATATGTGATTATAATAATTTATCAATTATCTGACCACTCTAATCAGAGAAATTATTAATTATCT TAGAAGGGTAGAAAGTTTTTTTTATAATGGTCGGTCATTTTAATTTTTTGATGAAGGAAATACTGCATGA ATTTTTCAGTACCCTTCTGAAAAGAACTACATCGTAAAGTTTGTGACTTTTATAATGTTTGATGACTGTG TATTGGTTATCACTTGTAGTGGGTTTATTTTGATTTTAACATTAATTACATAAATTACATATATTTCACA TCAATTAAGGTGAAAGAAACGGATAAACAGTAAAATGTATAACATAAGTGAAGTCTACACCATACGAGGT ATATTTTTATTCATTAGATTTCAACAGCCAAAACGTATTTACATTTTGTTTTGTACGAAAAGATATTATG CAATCCATTATTCTTTTGATACTTAATCCACACATATACCTCAATAATTTAGAATTTGCTGCTGTATAAA CTAGTAAATATTATCTCCCTATGTTTTAAAATCATTACCAGTAAATACTTTACATGAGGTTGTACTTGGT TCAGTTTTGTTTCCTTTCAGCAAAAAGGTGCCTGTTTGTTATATCCTGTTTTTAAAACTGTATAAATGCT ACTATCATTGAATAAGAGCAATTGAAGTTAATCACTTTATAGTTTAGTAAAGGAAGCACAATATTTTACT TTCATTTGTCAAATTTCCTGAGCATGTATTGTTTCCATGGATCATTTTCCAATCCCTACTGAACTCCCTG GTACCAGTATTCCCTCCATGTACTATGCATGCAGGATTATCAGACTACATGTACATGTATGTAGCTAGTA TCTGTCTTCTTTCTATCAGGATATCCCCTTATTCAAGGCTGTCATGTGGATGTACTGGTATTGTTATGCT CTGTTTAGTCATCCCGGGGTTGGGTGACAATGAGTTTGCTGTTTGAAAGAGTTTCATTAAAATTTTTATG ATCCAGATAGTACATTGCATATCTCATCACCCCAATTCCCAGATACACATTTTGCCGTCTACTTCAAATT TGTTATCATCCCTTGCGATTAATTTCTGCTTAGGTGTATTTTCTCTAATTTATATGGTTTATTTAGAATG GTAGCCAAATAGGTGTATGTTCTGTAAACAGGGATGACAGATGATAAATTATAGTTATACAAACTTCATT TCTAATGATAATCTTATCTATTTTCCTATATAGTTATTTTCAATGATTGATCAACCATAGTCCTGCCAAT TCGTTGGATGTAATGTGTACATGGTAGCCAAGTGATAGGTTTTCATTATGAAAACCTAGTTTTTAAAAGA GTTGGTTCAGTCGTTGTGCAAATTGATCACAAGGATGTTTTAATTTGTCCTTATAATATTGTAGAGGCTG AAGAAAAAAAAAATGATAGCATATAGTGTGCTATGTAAATATGTTTGTATTTCATTTGAACAATGTCTGT TAAGTTATATTTTATCTTTTTTGTAAATTAGTATCATGGAGAGGGAGGATGCATAGAAACATAGCATGGC CTGTTAGGCATGACAGGTCTTTTCCCCTGAACTAACATTGTAATGTTCTGATGTAGCTTTAAACTCGATT TTTGTTGTTGTTTTAATCAATAATTTCTTTACAAGAAGATACACATGAAAAAATGGGTTTATATTCTACA ACTCTCTAAATGTAATTTAAAAGCATTTAATGCAAATTTATAACATGTTATACATTTTCAAGTTTTTTAA AATATTCTTCTGAAATATGGGATATAGGTCTTAGATATATTGTTTTGTAAATAAGAATCTTATATAAGGT TGTTTTGTCAAACTTTATATATATATATATATATATATATATATATATATATGATACTAAAAATTCCAGT GTTTATGTAGATGTGAGGAAGAAAATATAGAAAGAAATATTGAAATACTGGTGAAGTCCCTGGTAAGTGC TACACAGTACTTTTTATTAAGAAAGAATATTTTAAATTATGGTATTGTTCAGAAGGAAAGCTTTTGTTTG ATCATAATGAAATAATAGTCTGAATTTAGGATATAGATGATATGTATAAATTCTGTATTTTACTGCTAAT ATATGACCCTAGGTAATATAAATCTAACTAGTTTAAATGGAATCAAACGTTTTCTGTGAAAAAGAACTGA GTGAAAAAGACAATTTGTTGCTATGATGCATCTGGAAAATTTATTTCTATGTATCTAAAAACTCTTTACG GTTCTTACTGAATTGGTAGAGATTACATTTCGAATTACTCAGATAAGTATTTGTTGATCATGTCAAGTTT CTGTGATGATCATGATAGAGGATAGAGGAAATAAGAGAGGGAGACAAAGAAAAAGAGAGATATATGGCTT TATTCTGATCACTTGTAATAAAAAATTGTTTGAAATTATGTGTATACGCAGTGAAAAGAAATTGCCTTCT AGAAGTTGCCTTCTATTTTTTCTGCTGGTGAATTTTTATTTGACTGAAAAGCAATTTGAAATGATAGTAC TCCTCATTTATGGTAAAATAATATCTGTAATAGAATTAAACTGAATCATGTGAATATTGATATTTGTCTG TGCTCAAAGCACACTCAGTATTGACCCAGTACTCATGATGATATGCCTATGAGCTGATGGAACTGAAGTA GAATTTTT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds