Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_038201784.1 PREDICTED: Patiria miniata tubulointerstitial nephritis antigen-like (LOC119729217), transcript variant X4, mRNA TTACACGGGGCCATTATGAGACTGAGCTGGTATTTTGGAAAGAAAGCATCGATGCGTGTTAAGGCTCGTA TGATGTTGTTCAATGCAACAGTGATGTGTGGTGTAACCTTGCCGAAATATGGTCTGGGATTTCACTGAAT GCACCGAAGGAGTTTTGCAGGACAGGTAGAAGACTGTCTTTGGATGATGTTGGAGTAAAGTTGGATGCAG GACGCGCCTCGATATCTCCAGACTTTTAGTGCAACACCCAAAGCTTTAATCCATAAACTGGAAACTCGCT ATATCTCCGCCGATACGTGTATGCCGCACACAAGGGAAACTTTGGACTTGTTGACTCCCTGCATTGCAGA TTCTCTCTTGTCTCAACATTTAGCCGGCTGAGGAACTTCGTAATTTTGAACTCCCTGTGACTTGTGTCAG ATTAGCGTGGACCTTCAGTGGATGCTGGTAGTGAGTTGAAGTGAGCTAACAAAAAAGACTTTGTGCGTTC TCCAGGAAACATCATTTTCAGGACTGAGTTGTGCTTGGAGTGGAGTGGGGCCCACATCCAACGGCAATAT TACAAAGCTGATTCCGGAAGTGCTTGCCTGTTCTTTCTCTCGGATTTTGACAAGGACATCGGATGTTTTG AGATCATCAACCATCTGTGGTCTTTCTGAAACTCTCGTGGCTGTTCCCCACCTGCGCACCCTGGATCTAT GGGTGTTTAGGTCGCCAAGGTCCGCCGAGCCTGCGCTGCATTTCACCCGTCAGTTGGACCGTGCGTGTCG CTTCGACATCTGAGATGAAGATTCTTAAAACATCAATGTGAAGTTGCAACTTCTTGATAACGGTTCAGTC ACAGGAGCACGTAGTCCCAAAAAGACTGAAGAGCGTATCGAACTGCTTATACCCTTACCTCCCCAGACTC TAAAATACACAAAGATGAAGAACCTGAGCTCACCTTGTTGCCAGGCAACCATCCTCCTCCTCCCAGTCCT CGTCATCATCCTGTCGCTATGTATAGCACCCTCTACTGCCCGTTACTGCGAGGAGAGAGAGTGTTGCTTG GGCAGAGATGACGACTGCCACATGCCTTACCCGGCCCTCGTGCCCAACACCAGGTGTTACTGTGACCAGT TCTGCAACCGGACCCAGACCGATTGCTGCCCGGACTTCTGGGGCTTCTGTCTGGGGATCGAGCCGCCTGT CCCCATCGTAAGAGGAACCTGTTGTCATGACGGTCAAGACATCGAGGAAGGCAAATCCATAAAAATTAAC TGCAATCGTTGCCATTGCAAGAAATTGTTGTACGGGTTTTACGGATTCCAGTGCGAATCGAAGGTTTGTC TTGTTCAGCCGGAGGTGGCGGAGAGAGTCAACGTGAATGAAATTGGCTGGATGGCAGCTAACTACTCCGA GTTCTGGGGCATGACCCTAGAGGAGGGCTTCCAGTTCCGGCTGGGAACCATGAAACCCACGGCCGTGGTG GAAGCCATGAACGAGATTCGGATGGATGCTGCATCCTTGGACATCCCTGAGGAGTTCGATGCCCGGGATA AGTGGCCCAATCTACGAGACGAGGTGCTCAACCAGGGAGATTGTGCCAGCTCCTGGGCCCTCTCTACCGC CTCTGTCGCGTCTGATCGTCTTGCCATCCAATCAAACGGTACGATAGCCATGGCCCTGTCACCCCAACAC CTACTGTCGTGTAACATCAGACGGCAGCAGGGTTGTCATGGCGGCCATCTTGACCGTGCGTGGTGGTATC TGCGCAAGAAAGGCATAGTTACCACTGACTGTTACCCGTACAAGAGTGGAATGTCCTCAGATATGAAGAT GGATAAAGGTTCTTGCTATATCCGTGGCGAGCAGGCCGCCAACTATTGCCCAAAGGAACGCCAGACTAGT GATAGATATTTCTCGACCCCGCCGTACAGAATTTCTGAGGATGAAGAAGAAATAAAGGCAGAAATACTGA TGAATGGTCCTGTTCAAGCCGTCCTCCACGTCCAGGAGGATTTCTTCATGTACAGAAGTGGCGTCTATAA GCATTCCAAGATGGCGGAGAAGGACGAGCAGAAAGCGGCTGGTTGGCACTCTGTCAAGCTTGTGGGCTGG GGAGTCGATAAAACGTCCGGCAAACCTATCAAATACTGGATTGCCGCCAATTCGTGGGGTAAAGGCTGGG GAGAAGACGGCTACTTCCGAATCCTACGAGGCAAGAACGAGTGTCAGATTGAGTCTTTCGTGGTCGGTGT CTGGGGGAAAGTCGACCCTGACATGATCAACGGTAACAACTTGCCAGTCTGATTCTAGCCTCAGTCGCGT GCCCAGTTTACCCTCATACAGAGATTGTCTTCCAACACAATACGCGCACGCATAATATACTTATTTTTAA GTACCCTACCTCCGATTCCTTCCTCATTTGTACGGTCACGCGCGTTCTGTCCTTGGACAAACTTGGCACA AAGACAGTTCGAGCACGCCATATCGGGAAGGTAATGAAATGCAAATGGCAGAGATGTAAGTAAAATATTT TGTGACACAATGAAATGGATTATCGAACGATAAACTTTGGCCCCATGTTTAAATTTCTGCGTAGAACAGT GGTCTCCAAAAGCGACGACGAAGTTAATGTTGAAACAAGATTAACCTCTTGTACAAAATGTCGGCAAAAC CGTCGGCAAACCGATTACCGTACTGTGTAAGCTAGTGTAAAAACAATGGTGGTGCAGTTTCTGAGCCGAG GACATGAGGCAACATAGCCAACATGATTCATTATATTCGTGAACGAACAGGCGGAACAGTGCCAAACTTT GGCTAGTTGCCAAATGTTTACGCGATGCTCATTGGACCGTTGTTCACACATGATGGCATCCTTTGTGGAG AACTGCGCATGCTCTGTGACCTAATGTAAGGATATGCAGTGAAATGACCCTTAGTTTGAAATTCCTCCAT CCAAATCTATACGCTGACGCTGAAACTATTTCATGTCTTAATATCTGAAGATTTACTCAAAGTCCGAACT ATATGCTCCTGCTTATAGTGTGTCATGTGTTAGTCATGTGATGAATAATGTATTCGTGTATCCTGCGCAC GCGCACGATCACAATTTACAAACTTTAGCGCATGCACACTTGCATGAAATCAAAACTAACAAATTGAGAC TTTGTTTATTGGTGCTTCGAGTTCGCTCTTTTATTTAAAGACAAAATACAAAAATGTAATATATAGTTCT TTCTTTTAGATTATACTGTAAAGTTTTATATTATGACAGGGTATAATGGCTGAATGTGATTTTTTTTTTA CAACGCAAGCCATTAAATATTTAGCACTTATGCTGCAGTATTTTCATTACTAACCTGCTTGCCCACATAG AGGGCGGTATGCACAATGGTTGGTCATTTTGGGTAACTGACGTTGTGGACATGCATCGTCGTGTGACGTC ATGAATTGGTTCATGTTATCAGCCGTTCAGGTATTTTCCTTAACCAAAATAAGGATCGGTGTATACTTTC GTTTTTTTCGTGATTGTCACCAGTCAAGAACGAAAATTGACTCGAAATGATGATGAAAATTCAGCCATTC AACTGGATAACATTACAAAAACATTAATGTTCATCACCATGTATCTAGCATTAAGGACTAGATCTTTCAG CATTCTTATAAACCATTTGCAGCATGTAGGTAAGCTTCGGTTGTATTATAATGTGTCTTTTGTACTTCCA AACTATATATTCTGCCGCACAAGTTACACAACATGACGCCCGTTATAATGCAAGATAGAAAGAATTAACG GGTCTGATATAGTGTCGTTTGATACGCATGCGCAATGGAGTGTTTCGATCGGAAACATTAAAGGTTTCTT TTTTACAAATTTGTCATTACATATTGAGAAATTGTTTTAATTCATTTGAGGATCTTTTCCTTTGATCGTC ATCTCCGAGCTAATTCTGGGTTTGAAGATATGAAAGTTCGATTTCAAAACCGTAGATTGGCCTTTTACTT AATTGCAAGTTTCTATAAAGCAAATTAGTAAAATCAGTCGTCACACACACAACGCTGTGTATTTGTCACA TTTGTTATCAATGCAAAATGTATTTGCAAAAATTCATTATAGATTTTACATTTCGATTAGACAGAATAAT TTTTTTCAGTGTATATTTTTTGTATCGCTTTTCAGGATTGTTTAAAACTTGTTGTGTAACCGATTAAGCA TGATTTTCAATCGTAAAATATGCGATAGTTTTCTAATGGTAGCAATGTTGTATCTTTTATGGCCACAGGC TGCAAATTGAGTTATATTTTTAGTTTTTCAGATCTAGAAAATGACTCACCACTTTCATTGCATAAAGGTA ATATACAACATTTGCAAACACCAACAAAAATATTGTGAAATACCTTACTTGACTGTAAGTCAATAACAGT TTCACGCATCCTGTAAAATCATGGCACCTGGTGTGCTGTCTTTTCCGAGAAAAGTGGAATTTTCGTATCG ATTTCCAACGATGTTCGGCCGACCTTCGTTGGCAAAAACTGACGGCTTGGTTTTTTTTCAAATAATGCCC CCAATTTACCAAAATTAGTTAGTCCACATCCGTTAACGGGTGCAAGCCAGCTGGTAGGGAACCAGACTAC AAGAACAGCATATCATTTCTTGGTCTTTCCCATTATCTATACGAACATAACACTTTAAACAGGTCAGTGT AACAATATTTGCTAAAAAAAACTGACACCCAAATCCATCTATTTCTGAAAATAATAGCAAATCTAATGTT GTATATAACCTTTGAAGGAAACCGGCTTGTAAAAAAGAATCGCTCTTCTTTTGCTATACTTTCGCTTTAA CACTGTGCCAATCAATATGCAAACCGAGTCCTAAAAAATACGGAGAAATTACTTTTTTCTGTTAAATACG TCAGTTTATCCCGGCCTTTATTCAAAACGATAAACTATATAACAGAGCGAACATCTTGAGAGTTATTGGT GGAGCTAACCTTTCTGTGTAAACTTACTCTTGATCTTGTTCTTAAAAATAATCTCAAGCCAGTATGTGAC TATCAGCGTACTAATGTCACCGTCTTTAAAGTGCTCCGTATACCAAACGAAAGAGTGTTTGAATTTTTAC ATAAAACTGTGAAATATATCAAGGACATACAGGAATCTAAGAGCAATTTTCCAGAAACAGTTCGGGATCT AACAACAGAATGATTTTCGGTAGGAAAGCCTTGAGGATTTCGACGGGTATCATCAATGTTCCACATAAAT CATCTTCTTCCTTCAATGCATGTTTAATAATAAATAATTATCTCAGTTTTTCTTTTAAAGGCTAGCTCGC TTTATTTCTATCCATCTCAACGTGAAGTTAAATCAGCTTTAAGCAGAGATACTTATATGACGACTTATTG TGAAAGATTGAATAAAATATTTTGGGGGAAAAATT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds