Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030983202.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized peptidase C1-like protein F26E4.3 (LOC576792), mRNA CATTTACCAATTCGACCAACAAGCGAACGGACGCATTCTTTTTGTACGCCAAGAAATCAGACTATTTTTG ACGTATAATTATTCCGCGCACTTTTGCTCGTCGAAGCTTTATAGAACCGTCTGACAGAGCATCAATATTT GTCAAAAACTTCTGACATCTTGACTTGGTGGCCTAGTGTGTTTTGGAACGATTTTCGCGTCGTGCTTTTG TTTTGGTAGCTGAAAAGGGGATTTTTCTCCTTTTTTTCTTCTTGTTATCGTCGCGATTGTGGAGATATAT TTTGCTTGGGAGGTGTTTTGGTTGTGGTTTATGAAGGAATAACGATCAGGACTTGACAGCTCTTGTGGAA GGTACAAGGGTAGCCCGTATCCCTCTCTTCTGACCTAAGAGCGTTGTTGGGAAGTCAAGAAGTAGAGACC AAGATGGCTTCTTCGTCTTTGATCATCACCTCCTCTGCAGTACTCTTCCTCCTGACCTTAGCTGTCCTCT TCGCCGCCGTCCCCGCAGATCACCACACCCCGCGCTACTGCGCCGTCCGCGGGTGCTGCAACGTAACCGG CGCTATCACGATCAGCGAAGCGGTCGCCAGGACGGGAATCGCACGCAACGACAAGTGCCACGCCCCTTAT CCAACCAGCAACCCGACGACGCTGTGCTACTGCGACGGGTTCTGCCAGAGGAACGATCCTGACTGCTGCC CCGACTTTTATGAGGTGTGTTTAGGTCAAATTCCGCCTCCGGAGGTAATACTGGATGCTTCAAAAACAGA AACCATACTACTATGCTGTCACGAAGGGAATGATTACCAAGTAGGGGAAGTTTTAAGGATTAACTGTAAT ACTTGTACATGTAAACCTGTTCTCTATGAATTCGCAACATTCGTCTGTGAGCAGAGAGATTGTGCCATCA ATCCAGAGGCCTTCGGAGAGATCAACGACGGTAACTTCGGGTGGTCAGCGGGTAACCAGACCGAGTTCTG GGGCGCCTCCAAAGACGACGCGATGCACTACCGGTTGGGCACCATGAAGCCCACCGCTGCAGTCCTGACT ATGCACCAGATTCAGAACGACATGCCACCGGAAGCAATTCCCGAGGAGTTTGACGCAAGGGCCCAATGGC CTGGTCTCGTCGAAGGGGTACAGAACCAAGGCAACTGCGCAAGTTCGTGGGCAATGTCAACAGCAGCCAC TGCGTCAGATCGCTTAGCCATCCAGTCTAACGGTACATTCAAATACATGCACCTGTCTCCGCAACATCTA CTCTCGTGTAACGTAAAGAGACAGCAGGGGTGCGCTGGAGGGCATCTAGACAGGGCCTGGTGGTACATGA GGAAGAGGGGAATTGTTACAGAGGACTGCTACCCGTACCTGAGCGGGACAACGTCAGATATGCAAATGAG GAAGGGTAACTGTTACATCAAAGGTCGTGACCGTGTGCCTCCGTTCTGCCCCAACCCTACGATAAGAAGC CAAAGATTCATGTCCACACCGCCTTACAGGATAGCACAAGATGAGCAGCAAATTCAGGCGGAAATATTCA CAAACGGGCCTGTACAAGCTGTTTTCAACGTCAAAAGCGATTTCTTCATGTATAATGGCGGTGTGTACAG GCATGTCCCGATGAAAACGACTTCGCCTGCGTCTAATGTAGTCTTTACCGGAGACCAGACCAACGTGCAG GCCGATGGGCCGTTGGAGGATGAGCTAGGGGGATGGCACTCCGTTCGAATCTTAGGATGGGGTGTCGACA GTTCCTATCCAAATAGACCACTCAAATACTGGCTATGTGCTAATTCTTGGGGTACCGCATGGGGCGAGCA GGGTCTATTCCGAGTCATCCGCGGCGAGAACGAGTGCGACATCGAGAAATTCGTAGTCGGCGTCTGGGCG AATATTGATACGGACATGATGAACCCAATTAAAACAAACAACGTCATATAAACATGTCGACTTAGGGATT CAAAGAACTCGGAAAATGAGACAGTTATGTGATTTTTTTCAGGCTGACGTAAACTGAGCTGGTAATGTGA ATTTCAGGCTGATGTTGTATTGCAGTTTACGTATTGAAATGGCTATGATGACGCTGCCCCTCGTCAACGG TGATAACGAAAGTTACGATCGGGGAAAAGTTGTAGTCACGTGGGTTCTGACGTAATCTTCGGACTGACCA ATGATATTGCCGGACCCTGATGAGCAACGTTCGCACGCAGAAAGTGGGTCGCTGATTGGTTGATATCGGT GACAACTAATGTTACATAATAGAAATGGATGCGGAAAAACTAATGCTGCCCACAGTACAACTTATGCAAA TCAGAGAAGACCATTGCTGAGGAGGACATCTAAGAGAATGAATAATGGACATGATTGACGATGGTTAGAA ACATTGGAAGACCTACGTTTTTGACGAGGGGTGCAGGTTTGCGCCTATGATACTCCTTATGTTCTGGCAA TAACATATTTGCGGCATAGGCTATATAACATGTAAGAGAACGACACAAAACACCATTCTTTATACTTTTA ATCAAGAGTCAAAGTACACGGTTGTCGTAGCATGCGTTTCGTCACCGGAGGCGCAATCTACATTTTCTTC TTCAAAATGTTCTTGAAAAAGAAAAACCACTTTTTACTCAGTGAGGTATGCAATGTGAATTACGCAAATG GCTGCATTACACAACCAATCTATTCCGTATCCGATAAAACAAAGGCTTGTTGATATGAAATCTCGAGAAA ATAGAGTTCACAGAGTGATTGTTCTTAATTATTTTGTCCTTCTTTAAAAAATATCAGAAAGATTGCAAAG ACGCAAAGTAGGAAGAACTACTGTTGATGTGGATCGGGGCCCTGTTTCATAAAACTTGTTATCAATAATA AATGGCAAATTTCTATGGCACATTTGCTCTCAGCCAATCAAATGCCTCGATTTCAGTAGCTTATAACAGT TATTGTAACTTGTAATGGATATCAAGTTTTATGAAACAGGCCCCAGTGCTAACTCGGCAGTAGGGCAAAC TTCGCCACGCCACGCAATGCCGAAAGGGCCTCACTGCCGAGTTAGACCGACCCCGGTTGATGTGACCCTG TTACCATGGATACCACATTTCAGCATCCCGCATCATTATGGCTATTATAGGATAGGATAGGTATATATAA AATTAAAAAAAAAACCTGCTAAAATTCTGACGCATTTATATATGTCTTTCTACCAACGTGACTTAGGAGA GTTATGACTAAAATTAAACTGTAAATATTTTGCTGAAAGAAAAAAAAAAATGTTTTATACAGTGGTTTAA ATTACACACTGCGGCATGTTTTGTCGATGATATTTATAGATAGATAGGCGTTTTTTGTATGTAATTTGCG TATTTATGTGTTGGTAAGATGAATTGTGCTTAAAATGATCGTAAAGCCTTTCGAGAAATCAACCTAAGGC AGTTTCGATGGCCCCGTATACGTCCCTTTCTGAAATGTACGAATATTACAATAATATTGATAATTACGTA ATCTGAACAAGGTTTCTATTGGGCAAACGGTATTGAAATTGCCGTTGTGTCGATTACTCGGAAGCCTTTG CGATCATGTCTGTTATCATTATTCTTATAGTTCTGTCTAGATATATTATACTTAGATTGGGAATACGGCA TCATGATCAATATGACTTTGTGTGGAAACGTTGTTTGTTAATTTCATATAAAATGATAAAATCATCAAAC ATAATGAATATCAAGGCCCCATTTCCCAAAAAGTTGTCATCAGTTGTTTTTGTTATAGAAGCTAGTGAAA TCCTTGCTTCTGCTTGGTTATCAGCAGATTTGTCACTGATTAAAAAAAAAAAATTGTCATTGAAAAAGAG GCTTTATGAAACGGGTCCCAGGTATTTTACAGGAATAAATTGATATTCAGGGAACATAAGGCTGCTCTGT CATTCTTGTATAGGCATCCAAATCATCAGACATACGAACAGAAATGTATTTGTTGATTTCATTATATACT CGTGATATCAAGTATGTTGCATTACAAATAATTGTGATGTATTTGACGTTTATTTAAATTAATTAAATTT CACGACAGTTTTATCCATACATTTTAATTTTCAGTAGAACAAGTTTATGATCACCATATTCGCTTGTGCA CTTTGAGTAATGGTATAATCTTATATTTATAATGTATACATAAATATGCATATCTACTGAGTTTCATTAA ATTGTTATAAACTATATATTTGTTTCTTATCAACAATACAACGTTGATACTTTATTTCAAAACATTATCA TGGAAGAGAAAAGATTTTTTTCTTCCATTTCCCAGATTTCAGAGGGAAATTCCTGAGAGAAAATGACTAT TATTTTTTAATATAACAGACCATTGCCAACTACCTTTAATAAAACTGAAAAAAAATTGAGATTTTTTAAG AACAACCAATAAAAAAAAAAAAAATTAATTCATATCCTTTTAAACTTCAAAATTGGAAGCTCTTATTAGG GTTATCCGATTTTGTTTGTAAGTGTTATATCCGAATACCAATTTTATTTAAGTCCTTTCCCAAGAAAGTT TTATAGCGAGGTTTTATAATAAAGTATTGAATAATATCGTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds