Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Search
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
MIM Diseases
GO Terms
Search
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Echinobase UCSC Track Hubs
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.blastType???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030979566.1 PREDICTED: Strongylocentrotus purpuratus uncharacterized LOC100891130 (LOC100891130), transcript variant X3, mRNA ATCATATTGCATTGCCGTACACCACATTATTCATCATACTTGCGCAGTGTTTACGGTCCAATAAACAACA TGTGAATCGAACGAAGCTTGTCTGGCACTGAGGCATGAGTTAACGAGGAAGCTATGGCGGGGACAGGAGT TACCCTGAGTGAACGTTTTAAAGGACTGAACCCCTGGAAACTGTCCTCTCTTGAAGAAGAATTTGAACAG CAACCCACCTCAGGCTTGTCCTTGAGTAATATCTTGAAGTTAAGCTCTCTTGCAGTGACTGTCAACGGAA AGAGTAAGAGCAGACGTCCGAAGGTGCCGAGCTCCAGGAAATATGCCACTACGTCCCTCCATAAGTTGTT CAGTCAGAAATCAACTGGGAAGGAGGCTAAGAATGAGAAACTGAAGAGCGGCAATGGGGATATTACGGTT GATCAGAAGAAGAGAATTGATCCATCGAATGCGGAGAAATCAAAATGTGAGAAATCTGGAGAGGTACCCT TGCAAGGAGCGATACAAGTAAAACCCAGCAACAGTGAGGCACTTATAGATGGATCTAAACAAACCAACAT CGATCCATCAAAGGGTTCCTTAAATCTTCTGCAGAATGGAGTTACATCAAGTATTGAAAGACCAAGAGAT CCACGTCTGTTGTATGGCAAAGGATCCTACAGCACCCTTGCCAAGACACCTGGAGCAGTTCCTCAGTCTG GTAAACCAGCAATTCCTGAAAAATCAGAAAATCAGGACACATCTGAAAAGGCAAGTAAATCTGAGAACCC AGACAAATCTAAAAATCCAGTCAAAAAGAAGAGGAGTTTTGGAGAATCTCTTTGTTCAGACAGTGGTGCA GGTTTGGAGGCTGTTGGGAAAAAGTTAGATGGAGGCAAGACAATCCAGGTTGTAAAAAGAAATGCAGTCA CCAAGAAAATCACTGGGGTGGTGCAGATGAATATGAAAAGGAAACCCTTGCAGAGTACTGATCCAAACAA GCCCCCAGTAAAAACATATAGTTCAAGCCATAATGCACTCCAGAGGATAGCTGAAGCCAAGAAGGCAGAA GATATAACCTCAGCAGCTGATTCAGGTGCAGAGGTCACAACGCCGAAGTCCTTGAAGGGTATCCTCCAGA AGAATAATCTGTCTGTTGACTCTGTTGAGACAAGTGAGAAAGGGACAGAGAGTGCAGTGACATCCGTAAC CGAAGTATCTGTTCGTACAGGTAATGCATTGAAAGAGGATAAATCAGAGCAATCTGTGGTAAAGCAAAGT ACAAATACCAAGAAGCCTGTGAAGGGCAAGGTCAAAGGATCCACAAAGGTTGCCAAGCCAAAACAGGATG TGAAAAACAAAACTGTATCTATGACTCCCAACACTCCAAACATTGTTCTGAAATTTTCAATCACCCCTTC AATGGATAATGGGAAATTTAATTTGACAGTTGTTTCATCATCTGAAGACGATCAAGAGAAATCTGACTCT AAAGAGCAGAATGTGCAAATGGGCATCCCATTATCAATAAAACACAATCCCAAAGAGACGGAGAGTGCAG TGACTGAAGTGACTGAAGTATCTGTTCGTACAGGCAATGCACTGATGGGCATTCCATTATCAATAGAACA CAATCCCAAAGCAGCTGCCCTATCTGCAGATGACCGGAAGGAGTTGGACAAGCCTAAACAAGTGCCTGTT ACAGATGAAGAGCTCAAGAAGGGGTCCCCTATCCAAGTCCATATTTCAAATGGTGCAAATGGTCATAAAA CTCCAAGCAGTGCCAGCATGAGCACCCTCAATGACGTTTCAACCAGTTTAGCAGAAGGTGCTCATGTGAG TGTAGGACTGGATGAAACAAAGTTAGATCAAGGATCTATGGTTTCTTCTGGATGCGTTTACACAACAGCC CGAAAGGTGGCACAGGTATCTAGTCATCAATCTGTTGTGCAGATAAACAACTCGCCTCCAGTTCCAATAA GCTATGTGTATGGGTCTGTTGCAAGCTCAAGCAAAGCAAAACCAAATATAGCCCAACCGGTCCAAACACC ATACAAGAGTGGCTATGGCATTGATGGTACCCAGATTCAACAGCATACTCCTATGTCTGACCAGTACGAG ATGCCCCCAAATGGCCATCAAGGAAATGAAATTTGGCCACACCATCAACCAAGTATTGTTACACAACCAA GTATAGTGTCAGCTGCATCAAGTAAAAGTTTAATAACTAAAGGTAATGTCGGTATAACTGAGTCTTTGCC AGTTGAGGGGCATGAAGAATCTCTCATTTTGGGTCACAGTGAGCCAAAGGAAGCCCCAAGTAATCATCCC ATAAGTGACAATATGCCAATAACTGTACGTATCCAGCAAAATGCGCAAAATGCCAACAAAGAAATCCAGA ATAAGGAGGGTCCATGTAAACCTGTACATCGTACATTGACTGCATGTGCTAGTGCCTCTGAAAAGGAAAT GGCGACATGTTCGGGAGCAGACAATTTTGATTTAGTGGACATGGAAATTTCAACCCCTGTCCGTCATGTA CCCAACAGCATCGAAGCTATCTCTAATGAGGCAGATGTGGTACCAGCTAATAGTGTTGGAAATGGCTCAG TGGTCCCCACTCTGAAATCAGATGAAGAAAAGAATGCCAAAAGTGACTTTAAGGAAACCGAGACAGCTGG CAGAAAGGACAGTGAGGTCATTTCCCCGTCAGAATGGACTGACGGAGAGGTTAAGAGCAAGGTTGATGGT CAACAAGCACAGGTTGCTAGTTGGACAACATACCTGCATGAAGACACTAATAGTCCGATGAGGTCGGCCT TCGGTTCAAAGCAGTCATTCAAAGAGGCTCTATCATCATTGCAGAGCACCTTGCAGACTTTGAACAATAG TGGAGATGCAGAGATTAGCAAGGATGAAGCAACTGCTCACCATCAGGTAATAGAAATTACAAAGCATCCA TCCCCCTCAACTGATGTGCAACATACAACTCAAATAGATGTAACCAGCAATAAGAGCCAGTTGGTGAGTG TGCCAAAAGAAGCCGTACTTTCTCCTAGTGCCAGCCCAGTGTCACAGAATATCTCTGAAGTGTCTGGTAA TGCATTTCAGCCAGACAGAACTGTGCCATTACCTCGCTTAGATGTTCATACAGATTTGCTGTGTACCAAT CACACAAGTGAGAATGCCTCTGTCCAGAACACCCTCAGAATAGAAATACCTAACCCTCCAAAAGTTGATG GTGGGACAGGAAATAGCATGTGCAACGGGACAAGTCAGTTCCAAGTAGAGACTGTCCTTGATGGAAGAAA TGGTGTTTCTGTCCCTACAGTCATTAAGTCAGCAGATTCTGGAAATGATGATAGCCTTGAATCTCAACAA AAGATGGGTGTTGTGTCAAAGAATAATAGTGTAGTTGATACTTGTGTGACCTCCAGCGTGATTTTCGAGG ACAGAGGCATCTTTGAGGACACTTTGAATCGATCCAAATCACCAGGTACACCGGTTGAAGATGAGTTCAG CAACCAAGATCCTTTTGGTCCGAAAGAGAGAGTGAACTATGAAACACAAAGCAGAACTGACCACTTTGCT TCATCTGATATTGGAGGTCCTAGCTCAATGAAATATGAGGAGGAAAACAATAATGCCTGTCATGAAAAGG AAAATGAACCACATTATCATGTGAAAGATGAAAGGCACAGGCATCAATCGGACTTCAACAGGCGCGGCAA CAGATACCCTGATAGCCCAAAGAATCGACACAGACCTGTTTACATGCGTGAACTCAGTAATGTTAGTGAT ATCAGTATAGAAAATGATGAGTTTGGGACTTTTGAGGATGGGTACAGCCAAGAAGCGTTGAAACCATTGC TTGTAAGAGGAAGAGACACCAGAATGGATCACATTGAGTACCCAAAAGATGATCCAAGGATATCAAGAAG GGAGATGTATGAAGATGATCAGGATTACTCAGACAGGACTATGTCTAGCCATCCATGTAAAGAAACACAT CCTCATTACACACACCCTCCTCCTAGAATTGAAAGATTGGATAACGAGGAAAGTGTTTACTCCTATCCTC AACCGGCAGAGAGAGTTCACAGATATGAAGCACCAGACAGACCTATCCAAAGGTATAGAGAGGAGCAGAG CCCTGACTCTCGGATTTATGCAAAAAGTGATATTGGACTTTCAAGGAGAGATAGTGGAGGACAGTTTCAA GAAACTCCAGTTAACCCGATGATAAGGGAACAAATGACAGCCGTTCAGGCCCTGCAGATTCAAATAAATG CTGCTGTTAATCCAGCGCATAGAGCAGCTCTTGTAATGGCTTTACAAGCTCTCACTGGAGGCCCAGTGCA ATCATCCACCGGAGAAGTGAGACCTGAGGTCGAGACATCTACAGTTCCTGAGAGGCAGATAGAATATAGA GATGTGTCAGATGAAGTTTCATCAAAGCACTTTCGTGATGACTCTGTTCATGACGATCCTAGCAACAGGA AGGTTGAATTTACTGTTGTTTTGAGAGATGATGATGAGCAGTTCTTGAGGAAAGACAGTACCAATCAGTC AAGGGCAGGAGATCACAGCAAAGTACAAAGGCACCCTTATGATGCTCAGGAAAGGTACCCAGACTCATCT GCACAGCATGAACATGGTTCTCACTACTATCGAGTTGTTGAGCTCAACGATGACCCACATTCTGACTATC CAAGACAAGATGGTATTAGGAAAGAGAGAATGGTATCTCATGAAATACCAAGAACTGTTGGGCGTCAAAG AGGTACTTCTCTTGAAAATTCAGCTGACAGTGATGGGGAGAGGCACTCATCCAGCAGATCAAGGCATGGA CAGTCACTGTCTCCTGAAAAAAGAGATAAGAAACAGAAGAAATCCATTAGCAAGAAATCAAAGAAAAAAG CCAAGGAATTTCATGGCCGTCCTCTAATCAAGGATAAGACCAACAAAACTGATCCTCATTTCATTCCTCT TGAGGATAAGGACATTGTACATAGAAGGATTGATCCTAGGAGAAGCTTAACTCCAGATCCTGCAGGCGAT CCTAAAGAACTCAGACCACTAACGTGGCCTCATACACAAGTGGAAGAAAGCAAGAAAATATCCCGGAGCA AGGCCAGAAAAAACATGCAAAAAGACAAAATGCCTCATCCTAAACCAACTGATATTTTACCTTGTTCAAA GAATTTGAATTGTAAGCAAGAAGAATCAGTAAGAGGGACATTGAACAATGCATCTTGTGCTGAGGCACTC GCTAAAGAAAATTCAAATGAATGCCTTGTAAAGAGAGTTGTGCATCCGGAAGTAGTTGGCAACAAAGAAG GAAAGGCATCGTCTGATGGAAAGGAAAAAGGGCAAGCCAAGGAGGCTCTCGGTGAGATAACAGACAAACC AGATCATGTCATTGAACAAACAATTACAGAATTTGTAAGTGAAGCAAGGGTTGCTTCCAGCCAGGTTACT AGTGGAAGTAAAGAACAACATGACAACGTTGCTAGAGAAGTACATGTTTCTTGTGCAACCCACAAAGACC AACTTGAGCAAACAAACTGCGATTTAGTAGAGAATGCCTCGTTAGATCACATCAGAAATGGAAAAGGAAG TGAAGACGAAAGGAGGTTGGATACATCAAATGAATCTACCACACCTACAAGCAGTCACTCGGGTGGGAAG AAGAAAAGAAAAAGTCCAGAGTCTAAGAAATATGACTATGGCGATGATAAAGTAGGTGAATCTGATTATA AACGGACTCCTCAAAGGAGAAAGCTAAGTGAAAGGAGTCCTGAAAGGCACAGAAAATACAAACACACTAG AAATGATGGAGAGAAAACTAGACACAAACGGAAGTATGTATCAGGCTCGGAGAGTGATATTGATAGTGAC AGAGGAGAGCATGTTCGTGAACCAGGGAGTAAATTCAAACATTACAAACAATTCTCGCGATTTAACAAAG GGTATGACTGGAGATCAGCTAAGAGTGGGCCATTCAGACCCGGCTCTGGAATGAGGTCTCGTACCCCTTC CCAGAGGTTTGATTACAGGAAATACATATATCCTGGAAACTTGGGAAAGCCTTATGGAAACCAAAAAACA GTTGGTAGTGGAAGAGGGAGGGGATTCTCACGAGGACGTGCACATCTCCCTGGTCTTTGGAGGGAAAAGG AAACCTATTGCATTGACTTTACAAAAGAATTTAAGAACTCGCCTTCCAAATCAATGGCATCCCTTGGGTA CACATCGATTGTTTCCTGGGAAGATATCCATGTTGCCCTGTTGGAAATCAAAGCGAAAATGCACGCTGTG GAGAACAGCTCAAGAGAGGTTAGAAAAGCATCATCTCAATTACAGGTTGCTCCTCTTCTGAAGGTTCATA AGTCAGCGTTGACCGCTCTACAGTGCATTATGTCAGAAGTGTTTGGTAGGATCTCAATTGATAGACGTGA GATGTACCTGCATCGAAGGAAGTATGAGATCTTGATGGCAGACATCCGGATTCACGCTGAAGTTCTTGGA AAGTTGATACCACCCGACCAAGAGGAGGCAATGTTGTCTGAGTTTGTCCCCAATACAACTGGTATTCCTA GAGTTAAGCCAGCGATTGAATTGAAAGTAATGAATTGGTTGAGTCTAATGGCCAACTCAGATATGCTGCT GGCCGTCAAAGACATTATCAAGAAAAAAAGAAACAATCTTGAATATAGAGTTGATGCAATGAAAGCGTTG GATAAGAAACAGCCAAGAAGGGTAGAAGATCGTATAAACAGACATTTCCCTAGAAGCAGACAGTGGTCAG GAAGTGATATTTCACCAGACACCACTAGACCTGAATGTGGGAATCACAGAGATGCAGGGCAAATCAAGTT AGAAGTTTCACCAGAAGTTCGGTCGTGTCCAGAGTTTTGTCCCAGCACGCCAGAAACTCCAGTTGAGCAC TTGCCTAGAGGATTTTCAGAGATTCGTTTGCCTACACACCATCGTAGTGGGTATCGTGAAGAACATCCTG AAGCAGGTCCATCTACAGACTTCAAATATCCACCTGAGCCAGTCAGGAAACCTATCAGTACCAGTGAAGA AAACCTAGTACTTATGGATATTTGTATGCCCCATGATGCTGATGAAAATGTGTCTTTCAGCCTGGTGGAT ATTCCTTCACCTGGGGACCAAAGACCAGCAGAAAGTGACCAGTGCACTAAACCTGTCCCAAGTAAAGATC TTACAACTGAATTCTCTGTAGCAGACAGTAGCTCCAATGATGTAAACGACACAAATATATCACAGAAAGT GTCTCCAGAACATTCAGTGGTTCCTCAGATGCCATATGACAATCCAACTCCAAGTGGGTTTGTAAATTCC TTTAAACCTGCTACCCCATCAAGGTATCATCATTCAGAGCCAAAGTTCTACATCTCCAGGGTGCAGAGAC TTGCCTCCAAGACACTGATGTCCCCAGAGTCAGGCTCTGATCTTCAGATGCTGCTGAAGAGCGACGCAGA GAGGAAGTTGAAACGAAGCAAGAGCCAACAGTCGCCCTCCTCGTCAGATGAGCCATCAAGTCAAGTTGAC ATGAGTGTCGGGAAGTCTGAACTGAAGTCTCCGAGGTATTCGAAGAAGCGGCATTTCCTGGCAAAGTTTC AATCTGACTCGGAGAGACCCGATGACAGTCCGAAAGTTGACTCCTCAATGCTGTGTAAATCCCCTGAACC TGTGTCAACAAAAATCAGGGGGAACAACCTCAATGCGATGTACAACGAGTATGATGAGAGCTGTCTTGTG GAGGAGATTGCCAAGATTGACAGCTGTGTCCTAGAACCTTCACCACCAGCACCTACATCTAACTCTAAAA ATGTACCAAGCCATGTAGGACCATCGTAAGAGTCAAGAGAAACCACAGCATCGGTGAGAGAACAAAGGTC CAAGAATTGTCCGTATCAAGAAAAAACCTCGCAACAACTGGCCATTCTGACTGCTGCATGTCCACTGACT GGAGAACTAAAGGTAAATTAAATCTTCAGTGTCTGAAAGTCAGCGATGAACCCTTGGACACTGATAATGC AAGTCAATTATAAGTGACCTGATGTGACCTTCACCAAGTGACCTTCAGCAAGTGACCTTCACCAAGCGAC CTTCACCAAGTGATGTCCAAGTAAGCGATTCAAAGGTGGCAATGGACGCCCTTGAATTCAGGAAGCTACA ACAAAGATAATCTTTTTCTGAAGTCAATCCAAAGAGCTGCCAGAATGTGGTAAATATTCTCTGTTTTGTC AGTGTAAGTTCTATCAATTTTTGTGTGTTTTACACTTTTACCATGTTTTTGTACAAACCTCATTTTCCTG AAGATATGTGTTCTCTAAACAATGAAATGGTTTATACCTACCCTGTACATGCTATGTGTTGTAATATGTT TATTATGCCAAAGTAATTATATTATGTGTCCAAAAGATACTTGTTCTAAAGATACTTTCATAATTGAATA TGTGGCTTTGGATAATTTCCTTATTCTATCTTAATATAAAAATGTTTACGTTTTTCAAGTGCCACTTGAG CTCCTGTGGTGAATATACTTCCTACTTCAATATGCTGCATTAAATAAACAAAAAGGCTGCCAATTTTAAT GGGAATAGTTACATTTTCATCAATTAAAAATTCATATTACTTAATTTGGTTCCATTGCGACTGAATTTTT CTGCGATGATTTCTTTGATGGTACCTAGATATTGTTACAAATTGCATTATGGATGTGTCAGAATTCAGCC AATATGTTTATGTACCATACCCCACCCCCTCCC
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds