Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_790185.5 PREDICTED: Strongylocentrotus purpuratus high-affinity choline transporter 1 (LOC590588), mRNA CTCTCTTTTTCTTCTCTTGTCATTGCAGCTACGTGGGTAGGAGGAGGGTACATTAATGGTACGGCGGAGT ATGTCTTTACGCAAGGCTATGGGCTTCTCTGGACACAGGCCCCATGGGGGTATGCTGCCAGCTTAGTTCT TGGTGGTCTTTTGTTTGCCAAGCAGATGAGATCCCAAGGCTACGTCACCATGCTGGACCCCTTCCAGCTC AAATATGGCTCCCGTATGGGGGGTCTGCTCTTCTTACCAGCCCTCATGGGGGAACTGTGCTGGTCTGCTG CCATCCTTTCTGCTCTAGGTGCAACAATTAGTGTTATCTTGGATCTGAACATGGAGATCTCAGTGACCAT CTCGGCCTGTATAGCAGCGTTCTATACGTTCTTTGGAGGACTCTACTCGGTAGCTTACACCGATGTCATT CAACTCATCTGCATCTTCTTTGGCTTGTGGCTATGCATACCTTTCGCCCTGACCCACGAAGCCGTCCTAC CAATCACAAACACATCCAGCGAATGGATCGGTACATGGGACAACAAGTATGCCGGCGTCTGGTTTGACTA TGCCCTCCTACTGATGTTTGGCGGTATTCCATGGCAGGTATATTTCCAGCGTGTCCTGTCGTCCAAGACT GCCGAGCGAGCCCAATGGCTCTCCTACGTTGCTGCTGGCGGCTGCATTATCATGGCGGTCCCTCCTATAC TCATTGGAGCTATTGGCTACAGTGCAGATTGGTCTCAAACTAAGATAGACCTCAACAAGACGAGACCTGA CGAGAACCCAGCTCTGATTCTACCTCTTGTCATCCAATACCTAACGCCCCCATGGGTCTCCTTCGTTGGT TTGGGTGCCGTGTCCGCTGCCGTCATGTCCTCCGCGGACTCGTCTATCTTGTCCGCCAGCTCCATGTTTG TCAGAAACATCTACAAGCTCGTCTTTAGGCAGGGGGCAACAGAACGTGAGCTCCTCTGGGTTCTCCGCCT CTCCATCGTCGTGGTGACCGCTCTGGCTCTCGTCATGGGGCTGACCATCAAGTCTGTATACGCCCTCTGG TTCCTCTGCTCTGACTTTGTCTACGTCATCCTGTTCCCTCAACTCTTCTGCGTGGTCTACTTCAGCAAAG TCAACACCTACGGTTCCTTCTTTGCCTACATCGTGGCCTTGTTTCTACGTCTGGGAGGTGGCGACACCAC GCTTCGCATACCTCCTTTCATCAAGTACCCGCTGTACAACGACGTGGATGGGCAGTTGTTCCCGTTCCGC ACCTTCGCCATGTCGATGTCCTTTTTAACTTTAGTCATCGTGTCCTATTTGACGAACTTCATTTTCTTGA ATGGCTACCTGAGGAAGCAGTTTGATGTCTTTCAGTGCATCGTGAACATTCCGGAGCTCCATCGTGAGAA GTACGACACGGTGGACGGCGAGAACCTGCAGTTGAAGACGATACAGACGGACGGCCCAGTGGACGGGATG CAGCCCGGTGCCAATGACCTCTTGCAACGAGACAAGCTCCTCGATCTCGGCCGCAGCATCATTCCAGGAT CGATATCCAAAGAACCGCTGAAGGACGACATGGATGATTCTCCGGAGAGTCCTGATTCACCGGAATAACA CCAGCAGTCCTAGGCTGTAGTCAATTGTATTGCAGATAAATTATGCTGTGTGTGTTTGTGTGAGAGTGGA TGAGAGTGAGAGATATCGATAGAGGCAGTGAGAGAGGAAAAAATGTATGAGAGTTCTTACTATAATATTG AAATCATGAACAGTTTTTTAAAGTAAGCATCTGTACTTTCAATGAGGCATTTCTATAATTACATGTAAGA GTAAAACTTTGAAGCATTGAGAATGACATCATTTCTGCTGTCTATGACACATTGTCTTCCCTACATGTAA ACCATACCCTCTTCAGTCCTAAAGTAATTTCAGCGTAAGTCATCCGAATCTGAAAGTAACCTTCTTTAAT CTGTTTTAGGTTGGTAGGGGATTAGGTGTACATTGTCTCAGTTACAGATCTGTTCTGGTTTAGAAGGGGT GCGATGGTGCATCCCTGCTAATCCGGAGTAGTTGCTTTGTGGCATGATACTGCTGCAGACAACTGTTTCT GAAATCTTATCCCTGCTGTGCAAGTAAAGGCCTGTTAACATATGGCTAAACCACAAATGTTCCCTTTTTT GTGTGGAAATGAATTCTAAGTGGGGATTTAAAGAGTACCATTTACATCAAAGGACATACTGTACCCACTT ACATGTATCTGTGTGTTATGAGACGCAGAAATATGAAGTACACTATACTTGCCGGTTTGGCCTGGCAGTT TACCGCTGCAAATGCGAACAAGACTTAAATTTATACTATTCGTAAATGAACTTTCAATGAATTAGGTGGT TTTAATTCTTCCGGTTTTACTCAGGGCATGCAATATCCAGCTTGGGAACAAACTTCACAAATCAAATAGG TTTGTTTCAGGAGGAAAAAATAGAAGAAAACGAAAGGCTGACTCCAAACATGCACTACACCATTGCTGTT TCTTGAGTGGGAAGAGTCATCTGTTCATAGCCAGAAGGGCGTTTAACATATGTGTCAAAGCAAAGGAGTT GGTGCCCTTCTGGCTCTCAGCAGATGAGTACAGTGCTGATATGCTATGACAGACTACATTCCAAAATATG TCATAAATTCATTCCTGTCAGAAAATGTTCTTGTTCTCTCAGACCAAGTGAAATATCATTCCTTTTTCAT ACTATTCTAATATTTTTGTCCTTGAGAAGGTAGTCTGAAAAATGTGAGGTACAATGAGTTAACCCATAGC AGTTCAGACTTCTCTTATTTTCTAAATCAGTTTTCCCTCCTTCAATTGGCTACATTTAATCTACAGTCAA ACCTGTCTATAGCAACCACCCAAGGGAAACACAAAAGTGGTCTTTGTAGACAGGTTCCTTTAGTATATGT TTCAATGAGAAACCATTTTCAAGGGAAACCAAAAATGTGGTCTTTGTAGCTAGGTGGTCACTAAAGCAGG TTTGACAGTATTTTCCACTCCTTCATTGTTTGAAGAAAAATTGGAATTTTCAGGCCTATAAAATAACAAA TGTGAAAGAGCATAGCAAAATTGAAAGTGATGTTTGTTTACACCGTGACGTTGCCAATTTAGAGACTCTA ATGATTATTAACAATTGAATCACTCTCATTCGAGCTTTGATCGCCAATACTACGTTGGAAACAGAATCAA GATTTTCTTTGATGACTGCTCTTTCTGATCATGTATAAAGTTTAATTCCTAGCATTGTGGATCAAAAGAT AATGAAAGAAAGAAAAAAAATAGTTATTAAAGAAGACACTGTGCTGTTATGGGTTAAATAGGAAAGGTAG TAGCCTGTGTTTTATTCGATGGCACATTTACTTTCCCAAGATGCAAACATCAGTGGGTGAGGACCCATTA TAATGGGGAGGGGGAGAAGGGGTACCGCCCTTTCAGGAAAACCCTTCAGTCTACTACTTCTCCCAAAGCC TACGATGCTGCTTCGAGTATAGAGAACAGAGAAACGTAATACTGAATATTCTTGGGAAGGAACCAAAGAC TTAATAATCATGTTAGCTGAATATTCGAGATATGCAATTAGCGTAGAGTGGGGGCACTGTGATAGTGTTC ACATTTATAAAGCTGTTGACCTTTGTCAGTTATGCATGTTTCAGTTCTTCTATATGTCAGATAAATTATG TACAGCAATGATTCTATTGAGAATTTTAACTTTATGATACGTACTACAAATATTTGTGTGTGTGTGTGTA TATTGACGAGAGTTTGCAATTTAATATACAGATCAATTATAGTACAGGTCAAAAGCAGGTCGTCGTGTAC CAAAAAGCATTCTTTTGTGTCTGTGCTTTCATTGTAATTTATTAAGTTAGAGGTTTCAATTGAATGGAGC ATATCAGTTCAATTTGATTTGGTGTTTAATTGGTATTGCATTTATTCCATATTTTTACTTCAGTTTTTGT CAACATTCCCATTTAGAAGTATACGTGAATTTGGAATAGTTTCCCATCGCCATATTATATATATCTTTTG TGCATAAATGTGCCTAATGGATATGTACAGTCATTACTGTCCATAAGAATCTAAACTTGCTGTTCTTCAT TCCTCTCTCCGTCGCTGTTTATTAAATCATATATATATCTTGATTCATGCAATTCTGTGACCAAACTTTC TATATAGGGAATTGACAAAGATCAACAATGAAATTCAATACATACATGTATATATCTTTTCAGCAAACAT CCTTAATAGGAGTTCATCTTTAATAAGGTAAACTGTTTCGGTACTAGCATGTTGTTTTTGTTTTTGCCTC ATATGTATGAAAAATGACAAACGGCGTCGATTTCAAGAAGAGGATTCCAAGCATGGAGGAGAAGGAAGTT TCAAGCAATATTAATTTTACCACTGGAGAGTTTTCGTTCACTTGTATAGAAAGCACTTGCAACTTTGAAT GACTAGAAAATGGGTTTTAATCAATATTTTCTTTCTAGTATAGAGGTATCAGATCATTTCCTTTGTAAAA AAAAGAACAATCATGACTTATAAGTTGTTTATATTCATTTTAAACTCATTTTGATCTTTTCTTGTATATG TTGTAGGTAATGAAAATATCTATATTTTGTAAACTTGGTGACAGTTTTGTTTCCTCTTAGAATGTACAGT TCAGGTATTAGATTTTAAAGGAAATGTGAAAAGTCAATTTATTGATCTATTTAATGTGTACAGACTGTTA TTATATCGGTTATATTTTCCTGAAAAAGTGGGACAGTGGTGTAGACTTTATCATCCGTGTTATATATGCA AAATTTATTGCAAATAAGATGTCCATGTACTAGGTGTTCTTTCCTTCAATTAAAGGGGAAAACTACAGAA GGTAAAGTAAATATTTCTTCGATGTGACAGGCAATAATTGTGTGATTTGTGCATGAGCTAGAGATTTTTA TCTGCATTTTATGCAACATTTCCCCATCCTCTGCTACCATGCTTTAGTACTATAGTGGTGTTCCCCCAAG ACGATTTTGATGGAGGCTGTATTTTGAGTTACCCAATAAGTTCAATGAGCCATCTTTTCTTTCACTAGTG TACAATATTACTTATTAAGATGTCATACCTATCTTTTTAAACACTTTTTTTTGTTATGGTCGTTTTAGGT TGCCATGAATGTACTTTTAGAATTGACCAATTTATATTGTATCCCAATTTTTATCTGTCTACTTATTAAT GGATTTTTAAAATCACAAATTATACCATGCATGTAGAACCTGGTTAAGCAGTTGCTTTCATGTTACACCG GTTGTGTAAGCTTTCAACATGTTGCCAATCGAAGGATTATGAAGCTTATTTTCCTTTTTAAAATCCTGCA ATGAAACGTAATAAGGTGTCGCAAAAAAATAGAATCAATATTTCCAATAATATTTGCCCTTTAACTTGTG CATCCGGTATATATTTTACGGCTCTGAATCAAAATTTAGTGAGCCAAAATGATTTTGATGTTTTGATTGT CACAAATTTCAGATACTTAAAATGAGCTTTCTTAGATGTATGGTTTATAATTAATGTATTGTTGCCTGAA TTGTTGCAGTGAAATAAATGGGTTGTTATGCAGATTCATAGCACTGTTTCATAAAACTTAATATTGTCAA TAACAAATAGCTCCTGATATCATTAAACTTGATTGGTTGTGAGCAAATGTATCAAATGAATGTGGCACCA TATTGCGAATACCAAGTTTTATAAAATGGGCTCAGATGTTCCAGGCTTTTATGCAATATCTTTAACGGAA GCTATCAGTTACAGTGCAATGATGAAAGTACAGGGTTACTAAACTTTTTATGGCATTGCATAATACATTT ATCAGGTCTAAATTGGATGAATCTATCATAGACAGCATTTTATTGACAGGCATGGTAATAATCATTTGCA GTGTAATTTCTTACATTCCCACTTCAAATGATGAACTTGATATTAATTGTAGTTATACGTGTAAATACCC GTTTTTATTAAAATTGCAGACAATGAAGAGAACTCATTTATAGAATGTATTAGGTGCTGTGTTGTACATG TAGTAGGTTTTGTTTTATACATTATGAAGTTTTCTCCCCAACTGTGCGGATGAGGTGATTATTTTGTGAT ACTGTGCACAATAACATTATTAAACATATCTTCAGTTCATTTGTCACTGCTGTCAGAGAAGAATTATAAT TAAATGTTATTCATTCCCAAATA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds