Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus (
Purple sea urchin
) 5.0
L. variegatus (
Green sea urchin
) 3.0
P. miniata (
Bat star
) 3.0
A. planci (
Crown-of-thorns
) 1.0
L. pictus (
Painted urchin
) 2.1
A. rubens (
Sugar star
) 1.3
A. japonica (
Feather star
) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinobase Anatomical Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.searchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_030972218.1 PREDICTED: Strongylocentrotus purpuratus Fanconi anemia group D2 protein (LOC755314), mRNA TCAATCTCCCGCGCTAGCAGACGCGGGTTTTTCAAGTGGTCTCGAAACTAGAGATCGTCGACGTGATTCG CATTTTACAAATAATTCAACAAGATTGATATTGAAGCTCCTCGTGAAGATATTTTAGCTGCATTTCTTGT CAAGCTGCATAGTCAACTTATATCCAGATATGGGTAAGCCCCGAGGGAAACCAAAGCGACAGAGGGAATC ATTACCCGATGAAGACACTGCATCAGCTGCAGGTGCTGGGAAAGCTAAAAAGCCAAGAACAAGTTCTGAC AAGACAAAGTCTACCACTGCAGCTCATGTTGTTGATAAATCAACATTTGGAAAGATGGTGACAGATGCTG GCTTTTGTCTTATTGCTGGAGACCATCCAAATCAGCTCAATGTAGATCAAGTAATGTTCCAGAAAAAGCT GAGAAAAGCAGTCAAGTCCGCAATGAATTTAGGAGAGACTGTTGAAGAATTTATATCAGGCCTTCAAAAT CACATAGAGGATCCAGTCAGATTCAAATACAGTCTGCTGCTGACCACTTCCTCTGCTGAATGTGAGAGTG CCAGAGGAGGAAATCAGGATAGTCTCATCAGATTGATTCTTGGAATTGATGAACTGCAGCCAGCTCTTGT CAACACGTTGCTTGAGAAGCTGCCTGAATTCATGGGGAAGAAGAGTAACATGTTTGACTACAGTGAAGCA GTGGACCTACCTAAACTCATCCTCAACCAGTTTCATTGGATGGACAATGTCATCAATAGTAAGGAGATGA CAGACAAGATGCTTGAGATGGTCGAGATCTCATCACCATCCGTCCAGAGAGAGATCATTGCCTGCATTCC TGAGGTGGTCAGTGATCAGGAGCATAGTGAGGTAGCTAACAGATTGAAGAATATGCTAGAATGTAATTCC CAGCTGACTGTACCAATCATTGATGCCCTAGATAACCTGAACCTAACTCCAGAGCTACTCAGAGAGGTAA GGGGCTCAGCTCTAGAGAGCCTTGTATCTGCTGATCTAGACGACCTACCTGTTGTCATCAAGTTTATCCT TCAGTCTGTGTCTTCTAGCGACGCTCTGGAGGTAATCAGTGAACTGAGAAGAAACTTAGATTTCCACACC TCTCTTCCACCGTCCTCTGCTTCCACACCCTATGCTAGAGCATCTACCGCAGGAAATGTCTCGGCCCATA AGAAGACCACTGACAGTGAGATGCTGATACTAGAAACCATCAAGTCAACCATGAGATTCAACAAAGTACT GGCAGATGGATGGCAGAAGGCCATTGAGAGCGTGTCCGATGCAGCAGGTCACAAGGTCCTGGATATCTTT GTGCTTCTCATCTCACATGCTGTAGCCAACCGCAAGAAACCTGTGGAGGCAGTCTTCAGACATAAGGTTC GCAAAGGCCACTTCACGGAAGAACTTCTGCAGGCGACCTTCACGTCTCACGCCAAGGTTATCAGAGATTA CCTAGGATCCCTGCTGTGTATTGCAGAGAAGCTCCTGAGATCCCCTGAACCTCAAGTCAGTCAGTTTGGT TCCAAGGTCTATCAGACAGCCTTTGCAGCATTTGACGTCTATAGTAAACAGGAGGTCGTAGGAGCATTGG TGACTCACATTGGCAGTGGTTTGTCGGCTGAGATGGACTCAGCACTGGACATTCTCTCTTCTCTAGCCTC ATCCCATACCAAGGATCTTGCTCCCTTTGCTGTCTTCATTAAAGGTGTTCTTGATTACCTGGACAACTTG ACCATGACCCAGGTCAAGAAGCTCTTCTCTGTGCTCGCTACCCTAGCCTACAGGGGTGGAAGCTCTGGCT CTACGCTCCAGGATGAGCTTCACATTGTCGTTCGTAAGAACCTCACAAGCAATAGTCCCAAGTACAAGCG AATGGGTGTGGTTGCAGCCTTGATGGTCATACAGAACATGGCAAGGAAAAGGATGGACTCTGGGAGTGGC AAGCAGGCACTGGCATCCCTGTCCCAGGATGTCTTCAAGCAGATCTTAGGTCTCCTGGACCTGGTCAAGT CCAGCTGTGGTCAAGCCCCTGAGGCAGCTGCACTGTTCTTTGATGAGCTAGCAAACATTGTACAGAAGGG TGATCTGCATCCTAAGATACTGGAAACAGTTGGTGAGAACATCCTAGATGATTTCCAGGCCGACTTTGTT GTCGACATTGTAGGTGATGCCAGCAATGAGAACTATGGTTTGCCTATGGGTGAGATGTACAGCATGGAAG GGGAGGAGTCACAAGGGGGTGTGGCAATCAATCTCCTCCCCCTCATCTACAAGGCAGAGAAAGACAAACT CAAGACCGTTGCTAGGAACAAGAAGGCAGAAAGATGTGTTGCCCCTGCCTGTCTGGCCCCACACTTCCGG CTCCTTCGCTTCTGTGAGCAGGCCCAGCATGATGGCAGCTTGGAAGGCATTGATGCGCTCCTTGGATGCC CTCTATACTCCTCCAAGGATGATGTGGTTGCTAAGATACACTCACACTCTAAGCAGGAGAAGGAGCTGAT GTGCACAAACCTCTTCCTCTGCATCAACTGGTTTCGGGAAGCGATCAATGGTTTTGCTGCCCTCCAAGAC CCTGAGATGAGAGCCAAGGTGCTGGGTAGATTACAACACATCACAAGACTACAGACACTCCTAGAAACAT GTCTGGAAGCTACTCCTGGCTTCATCCCTCCTGTAGCTCACTTTGATTGTGAGCAGCCTCAGACCAGCCC ACTGATGGCTGCACAGAGTGGCTCATCGAGTAAAGGTGGCAAGAAGGGAAGAAAACCCAAAGATGACAAG AAGAAAGGCTATGAGGATACCAGCAACAGCACGGTCCTCACAGAATATGACTACGTCTCACAGGACAACA ACAAACAGAACGATACTACCATGGCCGACCCCGAGAAGGAAGGTACCAAGAAGGGGGGCAAGGATACCTC TACTCCCATCGTTGACTGGTCTAGGTCCAGGGCCTTCTTGCGAGAGCTGGACTTTGATGTGTTTTCGGTC CTTGGGTGTGGCTTGGTGTCTAAGACTATCCTGGACACGGAGATGAACACAAAGGAGGTGCATGTTCTGC AGCTTCAGCCTTGTGAGTTACACTTCCTCCTCCAGGACCTTAACAGTAAGCTGGATCACGCCCTTCCTGC TTCGCTTGGAAGAAGAACCTTTCTTAAGGTCAAATGGGACAAGACTATTGGTTTCTCGCACCTGGACCAG CTGACCCCACGACAGGTGGCTAAGAAGGCCATCAAAATGCTGCCCTCACTGTGCCAACATCTAGAAGCAA CCAGCGGTTTCTTTCAGGCTTTAATGGCTGAGAATGATGGGATGATTGATGGTCCAGGTTGGAACACAGA AGAGGCTCATCAGATGGGAAGATGTCTGCATCTCTTACTCAAAGCTCTTCTTTCTATCTTCTCTTGGAGT GGCTTTGTATCGTCTGAGAATCAGTCTATCTTTGAGGAAGCCATGGCCACCCTGAGCTCTCGTATTGCTG ATGCGGGCAAAACCTCGTTCACCTTCCAGCAATCTCTCAAACATGCTGCTCATTACATTGAGAACTTCTC CGGGACGGTGCCTAATCTTGCCACCGGTGTGACTATCATGAAAGTCATGGTCAGTATCAACACCAAGGGT TCTACACCGGCTGCCAACAAGAAGATAGCAACCCTTGCTGAATCTTTATTGAAAAGAGATTGGTTGGATG AAGACAGTGTAAGAGAGAAAGGTGCCAAACACAACGAGCTTCTCCAGACAGTCATTGAGATATATCTTCA TCACTGCGAAGACTCACTGAGCGCCATTGAGATGTTGTGTACAGAAGCTCTACCTGAACTTGATCCTTCA GATAAGAACATAGCATCCGCTCTCTTCCCTACCCTCAACAGGAACACCCTGAGCTGTTACTACCATGTGA TGCTGAAGGAGTTGGTGTCCTGTGCCCAGCAGTTCCAGCCTTCCATGAGGGCATCACCTGATGTCCAAGG TGAGACCTTTGACCGCTGGAGATTGGCGGTCAAGGTGTACTCGGCTCTGGTCAACACTATCAAGACGTTT GACCTTAGGAACAACATCAAGACGCTTCTCAAGTATGGTCGGATGTTCCTGGATATCTTCCTGAGACACG GCATGCCTCTGCTTGATAAACTCTTCAGGACTGAGAAGGATGATGTCCAAGCCCTGCTTAAGATGCTTCA GCAAAGCACCAGATATCTCCAACACATCTGTAGCCACTCAAAGGTGGCCAAGGACATTGCACTGACCACT CATGTGCCTCAAATGAAGCGCCTCCTGGAGCAGTTCGTCTATAGGGTCAAAGTCATGCTCACCTTACATA ACTGTCATGAGGCATTCTGGGTAGGAAACCTCAAGAATAGAGATCTCAAGGGAGAGGAGATTCCATCTCA GGTAACTAGGGAAGATGATAGTGATGAAGAGGAGGGAGCAGCAAGCAGACTAGAATCATCAGATGATAGT GATGAAGAGAAAGAGGAGAGCGGTGGAGGTAAGGCTAATGATTCTGACAGTGATGCCTCTTGCAGTGAGA GCTTTTGAGATCAAGTCCTTCTCAAGGTCAGGTTGCAATTCTGGAGAACCTTGGAGAGCTGACGACCTTC CTCTCCTGGCCCATGTTTCAGAAAACTTGTCATGCATACCAAGATACAATAACTGATATAAGCCACTGAA AGCATTGCATTTGATTGGCTGTGACATAGATTTATGGAAGCTGAGATTGATCACAGGTTGTATAAAACTG GTCTGTTTTTTTATTTTCTGTGTCTCTTGTTCCCAAAGAAACATTTTGAATTGGATTGATGCAACGCTTC TGATCATTATGTTTGAGGATACATGAAGTATAAAGAGGCTATTGAATGCTATTTAGTGTGTCACATTCAC ACAAGTAGAGGTAGTATGAAACAGCTACATGTAGGTCATTGCAATGGAGCATTCTGTAAAGTAACATTAG TTACACAATCGTTTAATACTGCACTGTAACAGCATCATATACAAGATCTTTACAGCACTGTACTTGTAAT ATCACTGATTAAAAATTTGATCTATTACGATGCTATTTTGCTTTTCAACTCATTGTTTATTATTGAAGGT CTGCATTGTTTCAAATCATAGATGAAAATTACAGACATGTAGATACAATATGCATACATGCAATTTACTG AGACTAATGAATTACTTGAGATTTCTGACAGAGTTGAATCTTTACATGTAGAATTGGTGTATGAATCTGT GGCAAATCATCAGAACATAATACTATGAAATTACTCTTTCTCTTCTCTTCTCTCTCTCTCTATGTGCCTC TTTAGTGTGTGTCTCTGTTTCTCTTCACCTCTCTCTCTCTCTCT
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds