Click here to close
Hello! We notice that you are using Internet Explorer, which is not supported by Echinobase and may cause the site to display incorrectly. We suggest using a current version of
Chrome
,
FireFox
, or
Safari
.
Echinobase
???banner.login???
???banner.register???
Contact Us
Cite Echinobase
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
Genes
People
Labs
Organizations
Paper Authors
Paper Titles
Echinobase Accession
Anatomy Items
Disease Ontology
OMIM Diseases
GO Terms
BLAST
Echinoderm mRNA
Echinoderm protein
Echinoderm CDS
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
Genomes
Download Echinoderm Genomes
S. purpuratus
(Purple sea urchin) 5.0
L. variegatus
(Green sea urchin) 3.0
P. miniata
(Bat star) 3.0
A. planci
(Crown-of-thorns) 1.0
L. pictus
(Painted urchin) 3.0
A. rubens
(Sugar star) 1.3
A. japonica
(Feather star) 1.0
JBrowse2 Tracks
Genes
Gene Search
Gene Search Tips
Gene Nomenclature Guidelines
Gene Name Questions
Expression
Search Anatomy Items
Quantitative Expression Datasets and Plotting Tools
Anatomy & Development
Search Diseases
Echinoderm Anatomy and Development Ontology (ECAO)
L. variegatus
Atlas of Development (pdf)
Resources
Protocols, Reagents and Data on EchinoWiki
Resource for Developmental Regulatory Genomics
Davidson Lab Gene Regulatory Networks
Libraries, Vectors and Screening
BAC Table
???header.navigation.echinobaseSearchAntibodies???
???header.navigation.searchMorpholinos???
Guide RNAs (gRNA)
Cis-Regulatory Elements (CREs)
Literature
Papers
Books
Cite Echinobase
Community
Find People
Find a Lab
Organizations
Job Postings
Downloads
Data Download
Gene Page Reports
Browse Download Site
BLAST Databases
???blast.header???
Download BLAST databases
???blast.alignment???
???blast.program.blastn???
???blast.program.blastp???
???blast.program.blastx???
???blast.program.tblastx???
???blast.program.tblastn???
???blast.database???
-- Genomes --
Strongylocentrotus purpuratus 5.0 Genome
Strongylocentrotus purpuratus 3.1 Genome
Lytechinus variegatus 3.0 Genome
Patiria miniata 3.0 Genome
Acanthaster planci 1.0 Genome
Lytechinus pictus 3.0 Genome
Lytechinus pictus 2.1 Genome
Asterias rubens 1.3 Genome
Anneissia japonica 1.0 Genome
-- mRNA --
Echinoderm mRNA
-- CDS --
Echinoderm CDS
-- Protein --
Echinoderm Protein
???blast.query???
>XM_041627347.1 PREDICTED: Lytechinus variegatus zinc finger CCCH domain-containing protein 13-like (LOC121430074), transcript variant X1, mRNA AGCAGGGTCCTTTACGATATGCACAGGCCACGAAAAATGTCGCTAGATGCGATGTTGTAAAAAGTTGGAT TTTTCACCTGAAGTTGTCTCTCAGAAAATGCAACGAAGTTTGTTCCAGCAAGCCGTGCGTATGCACGGTC AGAATCTTTCGGTCCTCACAGAAAAGCATCTTCAAGAAGATTTCATTTTCATGCAAGGAGAAAATGAAGA TGAACAGCTTGCTGATCAGAAAGCAGGGGAGGACAACCATCGGGAATCGGCTTTGAATCACCCCGACACT ACCGCGGGGGCTCCCCACCAAGACAGCGTACGTTTGACGGGGACCATGCGAGATCTTGTTCATGTGCAAT CGCGTTCAACAACAGCTGAATCAAGTGCCGAAGAGTCTTCAAAATCAGACACTTCACCGGAAATTCTACC ACTTGGTGTGCCGCGGGAGCTCCATGAGCCATTTGATGACCTGTCCACGAAGACCAAATTGTTTAAAGAT GATGGATTTGTATCCCAGCTCCATAATTTCATATCGAAGAAAGCCCACCTTCTATTCAAGGCATCTCAAG GAGCCAAAGAGTCTGCCACATTACCAAGCCTCCAGGACACCGTTGACCTAGACTACTATGCTACTTTACC CCCAATGGAGCAGTTCATGGTCATTCCTCCGGACCAGTCTAGGAAAAGACTCTTTGAGATCCTTGCCGTT GGCGATATCATTGCAGGATCGATCGTGGCCATCAAAGATTTCGGCATGTTTGTGCAAGTGGTGTGCTTGT GTGGAAAAGATGCCAGGTATCTTCAAGAGTGTGACATTGTTGGACTGCTTCCGAAGGGAGAGCTTGGTGA TAGGTACTCCCAGAAGTCTCAGCTTGATGATTTCCGTGCTGGTGATGTGGTCCGGTGTAGAGTGGTGAAG ACGGATGCAGTCAACGAGAAGGTCATCTTGACGATGATCAACCAGGGTGAACAGAATGATGAAAACCTTC TTGGTATCATCAACGAAGGTGAGCTTCCTGTGCATTACCGTCGCTCTCAAACCCAGCGAGAGACACAGGA GTCCTATGACGAGATGTTGGACAATACTCTAGGCTTTGACAACCCTTATAATGTATCCTGCCTGGCTAAC ATGCTTGATATAGACGATACAGCCCCACCTTCCCTGATGCCTGGATTGCAGAGTGCTAATTTCCCGACAG AGGAGTATGCAGAATCATTGAGGAAATGGCAATCACACAAATGGGCCATGGAAAGTGTTGCTCGAGGTGT GGAGCATTTCAAAGCAAGCCGTTATCTTGAAGCCATGCAGCAGCTTAACAGAGCCCTGGAGATTGATGCA GAGAATGTAGAAGGCCTTGTTGCACGGGGGGCATTGTTTGCAAACCAGAACAACTTGTCCAAGGCCATCA AAGATTTTGCTGAAGCTTTGAGAATCAAACCGTCTCATAAGAATGCCAATAGATACATGTGTCAGACTCT GTATGAGAAAGGAAAACAATGTGAAGATAACGATGAGAAAGACAAAGCCAAGGATTGTTATCAGAGCGCT GTGGACCTCAACCCGGATTTCAAGGACGCCCTCGTGTGTTTACAAAGACTTGAGAAAACTTCTAGACGGA AGAGTGTCAAGGATAACAGCGAGGAAGAAGGGCTTGTTACATCATCCGAAGAGTCTCCCCAGGAACAGAT ATCTGCCAAACAACTGCGAGAAATGATCACTGAAGAAAAATCCTCCACCAAGAAGAAGAAAAAGAAAGAT AAACAATCCCGGGGTCATGAGGACGGGAAAGGGGATACTAAAGTCAAGAAAGAGTTGAAGATGGCAAAAA AGAAGAAGAAAAAGAAAAAGTTGAGGAGGAGAAGCAGCTCCTCGCCAGAGATTTCTAAGTTGAAGCAGAA AGAACCATCTAGTGATTCAGAGAGTGAATCGTCAGAACCACCAAGCCCTGTGCCGAAGCACAAGAGAGGC TCGAAAGAACTGAAAGAAGTGCAGTCTCCAGAAAGAGGCAGGCTCACAGGGAAGAAGAGATCAAGAAATG GAAGCCTCTCACCAAAGCGAAAGAGCCGTAGCAAAACTAGGAAAGCTGACCTGATCCGAAAGAAATCCAA ACATGCTTCAGAGACATCCTCGAGCAATGATGATGATAAATTGAAGGAGGTAGAAGTAACAGATAAAAGA AACCATCGTAAGTCTATGGAGAGGAATAGCAGTGTAAAAGCTAAGCATAAAGTTGATTTGAATCGGAGCA GAAAGGATAGTGACTCTTCTGTGGCTTCATCATCTGATGAGGAGCCTCTGAAGAAGAGAGAAGGCAAAAA GGAAAGGAAAGACCAAAAAGTGAAAGAATCATCTCATAAGAAAAGGAAGATGAAGACCAAGAAGGATAAA ATAAAAAGAAGCAGATCGTCATCATCTGTCTCTGAAGAAAGTGCAGATTCTCCGTCTTATTCTCCCATGA GGAAAAAATCCAAACCAGCAAAGAAGGCTAAGAAAATGCATAAAAGGTCCAAGAAGAGGTCAGATAGTGT TACATCTGGAAGTGATTCCGGCTCAGAATCTGAGCGAAAGCCTTCCCCTCCCAGGAAAGCCCACAAGAAG AAAAAGAAGAACAAGAAGAAGAAAGCAAAGAAGAAGGAGCGTGCATCATCAGTTTCGTCTCGGTCGGTTC TCAGTTCTGAATCCCCAGAACGACCCAAGTCAACTGAGGAACATTCTAAGAAGAGGAAGTTCAAGAAAAA TACAAAAGGAGATGATCATTATTCAGACAGATCCAGTTTGGAAAGTTCATCTTCCTCAGAGCAGCAAAAG GTAACCAACATGAAGAAAGATTCCAAAGCCAGAATTGATGGAGACTCGCCAATAAGGTCAGAAAGACGAT CGCGGTCTACTTCTTTGGTTAAAAAAGCTTCCAAAGGCAGCTCAGACGAAGGAGAGGAGATCAAGATTGG TAAGAAACGGTCCAGATCAAGCGAATATAGTATTCCACAAGTGAAAGATCACCCTAAAAGGCAGTCATCC AGAGAAGCAGGCCATTCTCCAACAGATGAGAGACGTCAAAGAATGACTTCTGATGAAGAATCAGAGGAGC ACTACATGAAGAAAGCTGGGCATAAAGGACAAAAGAGATTATCATCACCAGAAAAAGAGGAAAGCAAATC TGATATGAAAGTCAAGACAGAGAGTAAGCAAAAAATTGAGAGAAAAGAAGAGGTAGACAAAAGTTCAAGG AGAAGTAAAAGACACTCTAAGGCAGAATCTCCTTCCAGTAACAGGAAGCACAGAAGTGCATCAAGGGAAA GAAATAAGTCAGATGACAGAGACAAAAAGAAATCAAGAAAATCATCCTCTCCTGCTGGTATGTCGCCAGA AAGGAAAGAACCTTCCGAGGATTATAAACAAGGCAAATTAGATAAACATTCTGAGTTTGGTGGTGATGGA TCATCAAGGGAGAAGAATAAATTTGACAAGAAAGACAAAAAGAGACAGCAGAAGTCATATTCTTCTGCCT CTGAATCCCCTCCGAGGAAAGGCAAAGTTGAGGAGCACAAAGAAGAGAAGTCTGGTAAGCATTCAAGGAC TAGAGAGGACAGTCATGAAAGGTTGAAGTTAACCAGGAGATCAAGATCTCTCTCTCCAAAAGGAAAAAGG GAAGAGGAAAAGAAGGAGCGTACTCCTATTAGAGAAAGAAAACGAAAAAGAAGTGGCTCTTTCAAAGATG ACACAAATTCACTTGAGATGGATAGCCGTGATCGAAAATCAAGAGATATTGAAAAAGAAGATAAAGTTAG ACATAGAAAGGAATCGGGTGAAACTCGCAGTAGACTTGAATCTCCTGAGGGAAGCAGGTATCGCCCCAAA TCAGCTGATAGTGGGAAAAATGCCAGAAAAGAGTCTCCTAAAGAGAATAAGAAGAGTCAAAGCAAACGTT CTCCATCCCCCTTTGGAAGGAATGAAGATAGAAGTAGATCAAGAGAAGATGTGAATCAAAAAAGATATTC AAGAAGTGGCAGAAGTACTTCCGTTGATTTTCATGACAGAAAACAGAGGTCAAAATCTGGGTCTTATGAG AGAGAGAAAGACAAGGAACATAACAGATCAGAAGACAAGGACAGAGGAAGAAATAGAAGAGAAAGCAGAG AAAAAGAAGATAGCAGAAGAAGAAGTGGATCTTTTGATAGAGAGGGGCCTACTAAAGAACGAAAATTGAG TGATGGCGATCACCACAAAAACTCTGATGAAACAAATAACAAAGATCGCCCAAGGTCAAGAGAAGATGAA AAGAGGAAAGAAAGCAGAGATGCTGAGAGAAGAACAAGTCATGATGTCATACGAGATGATAGGGATAGAG GAAGGGATAGAAGAAAGGAAAGCCAATACCATGATCTTGACAGGTCTAGTCGTAGGGAATCCAGAGACAG GGAAGGAAGAGATTCAGGGAAGAATGCAGACAGTTTTGGAGAAAACGGCAGGAAATCAAGGGAAAGGTCC AGAGAAAGAAAAGATTCACGGAAGAATGCAGACAGTTCTCAAGAAATCCGCAGGAAATCAAGAGAAAGAG AAGGGGAAAGGTCTCGGGAACGGTCCAGGGAAAAAGATAGAAGAGATTCAGCAAAAAATGTTGACAATTC TAGGGAAAGAAAGGAAAGATCTAGTGAGAGAGAGAAGGAGATTTCTGGGAGCAGATTTGAATCAAATAGA CGAGAACAGAAGATTCACTCTGACTCTTCCAAAGACATTGGAAAAGCAGGGACCAAAGCAAAGGAAGGTG AGCATCATCAGATGCCCTCTTTGAATATTGAAGATATTCCAATGCCTCCTGAAAAACCGACACCGGTTGT TGAAGACAAGAAAGAACCATCTCCTATTCTCTATGTGACATCCAGCTCTTGCAAGGATGAGATCATCAAG GTGAAAAGCAAGTGGGACACTGACAGTGAAGATGACGAAAGTGGTGCCTCTGGACCCTCTCAGAATCGTA GAGGTGGTGGAGGCAGGGGTGCTGCAGGTGGTCCAAAGTCTTTTGGACCCTCATCCCAATACAGGGGTAG CAATGTTGGTGGGAATACTGGTGGTGGAAAAAACTATGGAGGTTATCGCAGACATGCTGATGATAGCGTT TTTGAGAACACATCCTACAATATAGGCATTTCAGAAACTTGTCAGTGCTGTCAACATCTCTCTGTAGATT TAGAACAGGCTGTGCACCATGAGCCGTTGAGATTGAGGGGTGGATGCGTTGCCAGTCCACCACCCAAATA TGAATCCGATCACAGCGATTCTGATGTGTCTTTTAGTTCGTCAAGTAATGTTGACTCTGAAGAACCCAAG CAAGACAGTTCGTATGAGGATCATTCGTCGGTTGGAAGAAGGTACAAATCCTCATCAAGCGATAGAAGTT CTGGTGAGAGGAGTAAAAAGCGGTTTAAGCTATCAAGAAGGAGAGAAAGTCAAAGTTCCTCAAGGAGCTC AAGCACAAGCTCTTCAGGAAGCTGGAGCAGTAGATCATCAAGCAGGAGTGACATTTCTCTTTCACCAAGC GACAAATCTCGCTCTCCATCTTCTGAAAGGTCAAGTAGCAGTTACAGGAGCTATGGCTCTAATAGCAAAT CATCAAAGGAACAGATAGAAACCAGAAGACAGGATGATCAAGGGTCCAACACTGAGAGTTCAGATTCAGA GTGTGCGGATGAATACAATCTTTTTGATAGTTGGGAGGACTACATGGACACTAAGGGCCATAACCTTGGT AAAGAATTGCATTCCAGTATTAGAGAACAGCGCACTGTAAAGCTAGAAACTGGTGGTAGTACAGTAGGAA AGTTTAATAGAAATAGTCCTGTACACACAGACTCTGAAGAAGAACAAGAAAGCCCTAGCAAAACTGTCCA GACTGAGAGTCCAGATGACGACAATGCTAAATGTGATGAGGATATTACTGATAATACTAAATGTGAGAAT GAACAAAAGACTTGTGGTGATTTAGGAGAAAATAAAGAGAGTGGAACCTTGGAGAAAGCACAAGGTATGA AAAATCAGGCACCAATACTTAATAAAGAAGTCCAACTTGATAGACATTCTAGAAAAAGAGATAGAGATCA CTTCGCAAGTAGTTCGAAGCAAGAAGCAAACAAAATCAGCCATTATCAGGGATCAAGCACGAGTAGTAGA TATGGCCAATATGGGTTTGGAGCAGATAATGTTAGGCAGGAAAATTACAGTCACAATGAAAACTTGGATG AAAGTTATCCTGTAGAATATGGAAATCAACTGAAAGTAAGACTCAGCCACGGTTCTGACCGTCATGATCA TGTAAATACTGAGAGACGTCATGGTGGTCAGTGGTCTCATGATCATAGAAGTGGCCATTACAAAGATGAA AGGCAGCACAGAGGTGACGGCAATTACAGAGAAAATCACCATCACTCAAGACACACCTACCCTCAACGAG AGGAGAGGCAAGATTACCGCAGACACTCTCAAAGGGGTTATGGGAATCACAGACGAAGAGAGCACGGTTT TCGAAGGAGAAGGGATGATGACGATTGGGGGCGGGGTGTGAAGGAAGTCCAAGAACGGGGCACTTTCTTG GGGTTGGTGACGAAATCCAAAGAAGGATTAGTCTCACAGTTGTACAGTGTGTGTTCTTCAGCTCTTGAAT TAGTGCGATCTGATCACCGTCAGTGGTGGCTCTGACATTCATTCATTTTGGAATAGGTACACTATGTAAC TTCTTCAGGTTCTTTTGTTTCATCTACTTCTCCATATATTTGTTTTCAACTGAATTGAGTTTACATTGCA GATACATGTATGTTTCTCATTAGTGGTTTTAATTTTCCACTCATTTCCAATATCCATTTTCTTCAGAAAT TATTTCAATATCAAATCTGAAAAATAACTCATCTGTATTTTTTATTGTAATAGTAATTTTACGGTATTTA ATTTCATTTTTTGATTTTCACATTTTACTGAATATTTTACCGGCAATGATTTACTTCCTGTGTTCCTTAT GCTTTGTGTGAGCACAGGTTAATGTCTATTATTTGGCGATCATTTATGTGGGCTTCATCATTTGTGACTA ATTGCTTCTTAGCAATGGCCAATCCCAGTCCTTGTTGTTTATTAATAATTCTTACCATGAACCAATCAGA ATCACTGTTTCATAATTTTCTAATTCATTACAAACCTTGGTGAGTTAGTAGGCTGTTTGGATTGAAGCAA TTAATTAATAATTTGGTCCCTGTAATCATTGGGTTGTGGGTGGAGACATTATTTGCCCAAATTTACAAAG TTGCTTTCAAATATATGATCTGACACCATGGTATATGTTGCTTTGATAATTCAGTGCATACATATTTCAA GAACCCGTTCAGTAATGAATGACGGATTTTCTTGGTTACTTTTGGGTCGACATTGCTGCATGCACTGCTT ATGTAAACTTATTTTGTATGATAATAATATTAGCCATTTTTTTATAAGTGCTTTTTCCCAGAATGGCTCA AAGCGTGTTACAGCATATTA
???blast.query.upload???
???blast.options???
???blast.eval???
???blast.eval.01???
???blast.eval.10???
???blast.eval.1???
???blast.eval.001???
???blast.eval.minus5???
???blast.eval.minus25???
???blast.eval.minus50???
???blast.eval.minus100???
???blast.numalign???
???blast.numalign.25???
???blast.numalign.1???
???blast.numalign.5???
???blast.numalign.50???
???blast.numalign.100???
???blast.wordsize???
???blast.wordsize.default???
???blast.wordsize.2???
???blast.wordsize.3???
???blast.wordsize.4???
???blast.wordsize.5???
???blast.wordsize.6???
???blast.wordsize.7???
???blast.wordsize.8???
???blast.wordsize.9???
???blast.wordsize.10???
???blast.wordsize.11???
???blast.wordsize.12???
???blast.wordsize.13???
???blast.wordsize.14???
???blast.wordsize.15???
???blast.wordsize.default.message???
???blast.matrix???
???blast.matrix.blosum62???
???blast.matrix.blosum45???
???blast.matrix.blosum80???
???blast.matrix.pam30???
???blast.matrix.pam70???
???blast.gapedalgin???
???blast.true???
???blast.false???
Automatically set to False for sequences longer than 4500 bytes
???blast.filtering???
???blast.on???
???blast.off???
BLAST time is limited to 30 seconds